opensourcebrain/HodgkinHuxleyTutorial
0
1<?xml version="1.0" encoding="UTF-8"?>2 3<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"5 xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/master/Schemas/NeuroML2/NeuroML_v2beta3.xsd" 6 id="hhneuron">7 8 <include href="passiveChan.channel.nml"/> <!-- Include the channel definitions -->9 <include href="naChan.channel.nml"/>10 <include href="kChan.channel.nml"/>11 12 <cell id="hhneuron">13 14 <notes>Standard Hodgkin Huxley model cell with Na, K and passive conductances</notes>15 16 <morphology id="morph1">17 <segment id="0" name="soma">18 <proximal x="0" y="0" z="0" diameter="5.6419"/> <!--Gives a convenient surface area of 100.0 um^2-->19 <distal x="0" y="0" z="0" diameter="5.6419"/>20 </segment>21 22 <segmentGroup id="soma_group">23 <member segment="0"/>24 </segmentGroup>25 26 </morphology>27 28 <biophysicalProperties id="biophysics">29 30 <membraneProperties>31 32 <channelDensity id="leak" ionChannel="passiveChan" condDensity="0.0003 S_per_cm2" erev="-54.3mV" ion="non_specific"/>33 <channelDensity id="naChans" ionChannel="naChan" condDensity="0.12 S_per_cm2" erev="63.543396 mV" ion="na"/>34 <channelDensity id="kChans" ionChannel="kChan" condDensity="0.036 S_per_cm2" erev="-74.162211mV" ion="k"/>35 36 <spikeThresh value="-20mV"/>37 <specificCapacitance value="1.0 uF_per_cm2"/>38 <initMembPotential value="-63.77mV"/>39 40 </membraneProperties>41 42 <intracellularProperties>43 <resistivity value="0.03 kohm_cm"/> <!-- Note: not used in single compartment simulations -->44 </intracellularProperties>45 46 </biophysicalProperties>47 48 </cell>49 50 51</neuroml>52 53