OneScience-Group/CodonTransformer

1{2  "name": "CodonTransformer",3  "version": "1.6.7",4  "layout": {5    "conf": "Repository configuration and auxiliary project files.",6    "model": "CodonTransformer Python package and bundled model resources.",7    "scripts": "Executable training, inference, SLURM, notebook, test, and demo files.",8    "weight": "Local model weights and checkpoints."9  },10  "entrypoints": {11    "prepare_pretrain_data": "scripts/slurm/prepare_pretrain_data.sh",12    "prepare_finetune_data": "scripts/slurm/prepare_finetune_data.sh",13    "export_finetuned_model": "scripts/slurm/export_finetuned_model.sh",14    "inference_finetuned": "scripts/slurm/run_inference_finetuned.sh",15    "finetune": "scripts/finetune.py",16    "pretrain": "scripts/pretrain.py",17    "inference_single": "scripts/slurm/run_inference_single.sh",18    "inference_multiple": "scripts/slurm/run_inference_multiple.sh",19    "inference_batch": "scripts/slurm/run_inference_batch.sh"20  },21  "resources": {22    "tokenizer": "model/src/CodonTransformerTokenizer.json",23    "demo_dataset": "scripts/demo/sample_dataset.csv",24    "raw_training_data": "scripts/data/raw",25    "processed_training_data": "scripts/data/processed",26    "checkpoints": "weight/checkpoints"27  }28}29