hanhou/patchseq

Merge pull request #3 from AllenNeuralDynamics/han_add_distribution_PC1

Replace scatter+marginals with two standalone box comparison plots

Add scatter plot for tau vs PCA1 with marginal box plots for projection groups

Add tau visualization and statistical comparison for projection groups

Add edge color by projection target option and fix XY plot aspect ratio

Add PC1 distribution comparison panels for spinal cord vs cortex projecting cells

Add depth visualization to spike analysis with new plots and color mapping

Update spike visualization fill properties for improved aesthetics

Update LCNE-patchseq-analysis dependency to a specific commit hash

Merge branch 'han_add_last_spikes'

Refine spike visualization aesthetics with updated line color and fill properties

Enhance spike analysis visualization with new component plots and overlay functionality

Add function to calculate EFEL asymmetry columns in metadata

Add spike waveform selector for spike analysis

Update README with deployment details and links

multiple fixes

hotfix

Merge branch 'han_dev'

feat: add mean and SEM to timeseries plots in spike analysis

fix: legend group

Merge branch 'han_dev'

feat: enhance scatter plot with confidence interval for regression line

Merge pull request #2 from AllenNeuralDynamics/han_add_phase_plot

minor

feat: add progress bar

fix: change line style for negative dV/dt segments to solid in spike analysis plots

feat: store figures for context-aware downloads

feat: download svgs

feat: add mean and SEM visualization for time series and phase plots

feat: adjust legend font size for phase plot visualizations

feat: add normalized phase plot

refactor

feat: remove normalized phase plot and update layout for phase plot visualizations

feat: update legend styling for phase plot visualizations

feat: enhance phase plot interactivity with synchronized legend visibility

feat: also sync the query string!!

fix: remove throttled in spike analysis

fix: remove throttle to make url sync work

feat: sync more settings to url!

feat: sync app state with URL for improved navigation

feat: add raw phase plot

feat: add phase plot normalized

fix: update metadata loading to include morphology data

Merge pull request #1 from AllenNeuralDynamics/han_dev

fix: update violin plot generation to handle categorical color columns and improve statistical test handling

fix: sort factors alphabetically and ensure sufficient colors for categorical palette in color mapping

fix: refactor LC mesh overlay logic into a dedicated method for improved readability and maintainability

fix: enhance scatter plot interactivity by isolating hover effects and adding LC mesh overlay

fix: add LC mesh overlay to scatter plot for enhanced visualization

fix: remove title from scatter plot for cleaner visualization