OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/balbasty/brca",4 "url": "https://github.com/balbasty/BRCA",5 "host": "github.com",6 "commit": "0fdeba175a3f5b362e805364340d8a7865c59d60",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "+brca/+dataset/@image/image.m",13 "sha256": "4a772773e2b8e0ee40969abb941fdd544fd4b8517056a70ed6e9cb37093b75a5",14 "language": "MATLAB",15 "lines": 31,16 "truncated": false,17 "block": 11,18 "row": 1599519 },20 {21 "path": "+brca/+dot/@base/base.m",22 "sha256": "346d5c53c0f88928d77581910871382555684c50e6f6d43af6e076d6cc8167ca",23 "language": "MATLAB",24 "lines": 22,25 "truncated": false,26 "block": 11,27 "row": 1552428 },29 {30 "path": "+brca/+dot/@diffeo/diffeo.m",31 "sha256": "61ae24529c26e25971f4b2fa34da8abe5f33d5f75ca92358f201f915715f0740",32 "language": "MATLAB",33 "lines": 58,34 "truncated": false,35 "block": 11,36 "row": 1893737 },38 {39 "path": "+brca/+dot/@euclidean/euclidean.m",40 "sha256": "c2d09ec11682e11f109aae3b6c059c4d7e2f28ec12695243486a97878d502538",41 "language": "MATLAB",42 "lines": 25,43 "truncated": false,44 "block": 11,45 "row": 1530646 },47 {48 "path": "+brca/+dot/@field/field.m",49 "sha256": "dc032c7ca4ebed436fd23385e20f7ba74e7487c12cd056e43945289dba131c55",50 "language": "MATLAB",51 "lines": 52,52 "truncated": false,53 "block": 11,54 "row": 1825055 },56 {57 "path": "+brca/+dot/@subspace/subspace.m",58 "sha256": "c3c7160441e4b7b49fcd08040cf993737ac3f37dc682cc64d127af1f2ce13812",59 "language": "MATLAB",60 "lines": 128,61 "truncated": false,62 "block": 11,63 "row": 2176164 },65 {66 "path": "+brca/+example/faces_orl.m",67 "sha256": "3f2f368714c9da351a9a9439aaebb5e942d3d6a896f0760157e9aa28ef440715",68 "language": "MATLAB",69 "lines": 44,70 "truncated": false,71 "block": 11,72 "row": 1838873 },74 {75 "path": "+brca/+example/velocity_oasis.m",76 "sha256": "960ed067ed2c9cd3212c3b4a65f2cb4133853d59bcd044e25715ffe510f0af2a",77 "language": "MATLAB",78 "lines": 52,79 "truncated": false,80 "block": 11,81 "row": 1933082 },83 {84 "path": "+brca/+format/@base/base.m",85 "sha256": "b195186c614576589f9563df4989754c1e4f63d5cc0fdb06d7dafda416d7cbfb",86 "language": "MATLAB",87 "lines": 16,88 "truncated": false,89 "block": 11,90 "row": 1517491 },92 {93 "path": "+brca/+format/@image/image.m",94 "sha256": "cd30ffa13615cb0c73bc7c550746d801e2a66bc30b13c2ae2e397fc67fcda80d",95 "language": "MATLAB",96 "lines": 72,97 "truncated": false,98 "block": 11,99 "row": 19592100 },101 {102 "path": "+brca/+format/@nifti/nifti.m",103 "sha256": "7b3cea9ca25dcb0bd6a48d2189f7829f73b09698f22127ed07d15d0087f8aeae",104 "language": "MATLAB",105 "lines": 125,106 "truncated": false,107 "block": 11,108 "row": 21825109 },110 {111 "path": "+brca/+format/@numeric/numeric.m",112 "sha256": "8d70ab83035fcdef1c6da8dcfc00c5f7e26e03ce5fc0c9b8177db1e3b7df61ff",113 "language": "MATLAB",114 "lines": 82,115 "truncated": false,116 "block": 11,117 "row": 19926118 },119 {120 "path": "+brca/+format/allocate.m",121 "sha256": "fbfe39102c91de0f09047145d2a4c7058c0a72a9e38031d7724e4e055478b452",122 "language": "MATLAB",123 "lines": 6,124 "truncated": false,125 "block": 11,126 "row": 14595127 },128 {129 "path": "+brca/+format/auto.m",130 "sha256": "8bde4324cb97cfc8052412faae8c44d23992780509c27cc2a6cc19017cedfda5",131 "language": "MATLAB",132 "lines": 36,133 "truncated": false,134 "block": 11,135 "row": 17171136 },137 {138 "path": "+brca/+format/class.m",139 "sha256": "349407fe12d6d317d73b0db14b6df592e0241c01badcabee26ca2ea0fc8367c0",140 "language": "MATLAB",141 "lines": 6,142 "truncated": false,143 "block": 11,144 "row": 14582145 },146 {147 "path": "+brca/+format/like.m",148 "sha256": "3509dcf7197c51ace69326334454515a257366f234fddb64d380a94d06548f4a",149 "language": "MATLAB",150 "lines": 6,151 "truncated": false,152 "block": 11,153 "row": 14575154 },155 {156 "path": "+brca/+format/numel.m",157 "sha256": "538efaea7485bbb0886880f329b96a2a73585fefd65ec9746e7868c691af6bbb",158 "language": "MATLAB",159 "lines": 6,160 "truncated": false,161 "block": 11,162 "row": 14583163 },164 {165 "path": "+brca/+format/read.m",166 "sha256": "ba90ca8d5f6f05a4f27bf9521866e69d392d09e97f86e8829f5dad3fe28473b8",167 "language": "MATLAB",168 "lines": 6,169 "truncated": false,170 "block": 11,171 "row": 14576172 },173 {174 "path": "+brca/+format/size.m",175 "sha256": "10edecbd797c8e66a677ee0001427f47f9577b12047844230fa943adfd50b689",176 "language": "MATLAB",177 "lines": 6,178 "truncated": false,179 "block": 11,180 "row": 14574181 },182 {183 "path": "+brca/+format/write.m",184 "sha256": "82b5496c0d270af1cbe41e3450818e0dbfda3000e1979558d2d531f641e31ed8",185 "language": "MATLAB",186 "lines": 6,187 "truncated": false,188 "block": 11,189 "row": 14584190 },191 {192 "path": "+brca/+plot/imshow_categorical.m",193 "sha256": "8a69818c42569cb7d5c141a58f0f749814b5061ba8e301c85d1cd4db0363c3ad",194 "language": "MATLAB",195 "lines": 44,196 "truncated": false,197 "block": 11,198 "row": 17082199 },200 {201 "path": "+brca/+plot/imshow_deformation.m",202 "sha256": "e8c5ff99431168332e8750443aa7bb75a075298f5ade836ce1a78ac31f67292a",203 "language": "MATLAB",204 "lines": 55,205 "truncated": false,206 "block": 11,207 "row": 17876208 },209 {210 "path": "+brca/+plot/imshow_mri.m",211 "sha256": "db6da50a95b24cfee52868146566677c8596902cfdf3edb276671c1b1e73deb4",212 "language": "MATLAB",213 "lines": 58,214 "truncated": false,215 "block": 11,216 "row": 17989217 },218 {219 "path": "+brca/+plot/imshow_phase.m",220 "sha256": "1cd2578dedaca494dc86f9d5814850b695293cabf5009dea0bb1d56f206c7786",221 "language": "MATLAB",222 "lines": 55,223 "truncated": false,224 "block": 11,225 "row": 17810226 },227 {228 "path": "+brca/+plot/private/catToColor.m",229 "sha256": "50afe6750f83f0624a84b7bde87379b9534b6e854e63b61a2b709238a58faa3b",230 "language": "MATLAB",231 "lines": 40,232 "truncated": false,233 "block": 11,234 "row": 16977235 },236 {237 "path": "+brca/+plot/private/defToColor.m",238 "sha256": "02556df8ba73dbf3fb0313cd11a12f9983fddf5405f147eb9455f8cef37e05d5",239 "language": "MATLAB",240 "lines": 38,241 "truncated": false,242 "block": 11,243 "row": 16791244 },245 {246 "path": "+brca/+utils/diGamma.m",247 "sha256": "03c09864b451853764c90abe48fa94ff932adc5b33d5179abcea5057aa024ffb",248 "language": "MATLAB",249 "lines": 12,250 "truncated": false,251 "block": 11,252 "row": 14720253 },254 {255 "path": "+brca/+utils/invPD.m",256 "sha256": "16a8c5c494760f8a16202b8215a0f5ac29b0c28d51bc7d4a34c52feec850e237",257 "language": "MATLAB",258 "lines": 19,259 "truncated": false,260 "block": 11,261 "row": 15467262 },263 {264 "path": "+brca/+utils/loaddiag.m",265 "sha256": "7800146941975dad48ee5be59adc5d440bcc3d03bbb4433088000e9429e1e729",266 "language": "MATLAB",267 "lines": 13,268 "truncated": false,269 "block": 11,270 "row": 14965271 },272 {273 "path": "+brca/+utils/logGamma.m",274 "sha256": "dc7ba0ad84e319a4a1b5ca0dfa558a5de01253ffe68c15ec948eae9b86cc97c0",275 "language": "MATLAB",276 "lines": 9,277 "truncated": false,278 "block": 11,279 "row": 14630280 },281 {282 "path": "+brca/+utils/logdetPD.m",283 "sha256": "239e3a60598a11137fedc62a6da21f6e016d4607a54a7f67e93fea737a2faeff",284 "language": "MATLAB",285 "lines": 25,286 "truncated": false,287 "block": 11,288 "row": 16355289 },290 {291 "path": "+brca/+utils/type_nii2num.m",292 "sha256": "c4b57d0a684785d387b7ade7a30063811e118722fac35cf9012265b774e713e8",293 "language": "MATLAB",294 "lines": 39,295 "truncated": false,296 "block": 11,297 "row": 17018298 },299 {300 "path": "+brca/+utils/type_num2nii.m",301 "sha256": "6088ed712f6a67da2b34d0c5d03995a74e18c47cd716242b7d36256a7a9f81ca",302 "language": "MATLAB",303 "lines": 41,304 "truncated": false,305 "block": 11,306 "row": 16963307 },308 {309 "path": "+brca/@model/apply_internal.m",310 "sha256": "2d78f0044e22d21355c98f6e2e3a5a29cb96dd72997b19ad8d269f3e31535e4b",311 "language": "MATLAB",312 "lines": 18,313 "truncated": false,314 "block": 11,315 "row": 15043316 },317 {318 "path": "+brca/@model/centre_latent.m",319 "sha256": "274267a1cf920d83501fb322c532f2a6a74130be9b337e44de15969b4aea6bbe",320 "language": "MATLAB",321 "lines": 68,322 "truncated": false,323 "block": 11,324 "row": 18642325 },326 {327 "path": "+brca/@model/elbo_latent.m",328 "sha256": "74b03ce385ba7ab7474a9aee543807cb62c6513e429c3e9f2032f4c74a948a25",329 "language": "MATLAB",330 "lines": 10,331 "truncated": false,332 "block": 11,333 "row": 14834334 },335 {336 "path": "+brca/@model/elbo_latent_precision.m",337 "sha256": "304aa5d671ad7289eafc7e14eabf8f2e1e35721c839c27f1d2b2933b8e1360c3",338 "language": "MATLAB",339 "lines": 15,340 "truncated": false,341 "block": 11,342 "row": 15893343 },344 {345 "path": "+brca/@model/elbo_mean.m",346 "sha256": "d60f5e2897cf11c9346a2b30ef81e7b409fb1e1751f82d23ffe89203fa49f874",347 "language": "MATLAB",348 "lines": 15,349 "truncated": false,350 "block": 11,351 "row": 15092352 },353 {354 "path": "+brca/@model/elbo_obs.m",355 "sha256": "8d9b180b4286a66d1f4f255ccc203d97049a7567f19229e1b72d19a70c8c5a3f",356 "language": "MATLAB",357 "lines": 17,358 "truncated": false,359 "block": 11,360 "row": 15782361 },362 {363 "path": "+brca/@model/elbo_residual_precision.m",364 "sha256": "5634ee74153b22d88ac3ea3a8507afee7622a988f63cc6d8a922939d5f1adcff",365 "language": "MATLAB",366 "lines": 15,367 "truncated": false,368 "block": 11,369 "row": 15586370 },371 {372 "path": "+brca/@model/elbo_subspace.m",373 "sha256": "a89fd304a72a32960a8afed6fed683b44b29923a36cd0e186819e1d1b2527da6",374 "language": "MATLAB",375 "lines": 10,376 "truncated": false,377 "block": 11,378 "row": 14760379 },380 {381 "path": "+brca/@model/init_data.m",382 "sha256": "b4d64a66c9d59c0b7f2b0cf0edb35678e095afa57f5accb9c7d3838f0ea25e0b",383 "language": "MATLAB",384 "lines": 15,385 "truncated": false,386 "block": 11,387 "row": 14975388 },389 {390 "path": "+brca/@model/init_elbo_parts.m",391 "sha256": "42ba590705cc88e184fb929e8af48dd8929c8e72a5aa73e3587be6c1085f8d6e",392 "language": "MATLAB",393 "lines": 70,394 "truncated": false,395 "block": 11,396 "row": 19096397 },398 {399 "path": "+brca/@model/init_latent.m",400 "sha256": "834d2008b2f9bdcf1267c472fb173dc7294edfe6d16b3e3d0bd6206c99b392a3",401 "language": "MATLAB",402 "lines": 50,403 "truncated": false,404 "block": 11,405 "row": 17409406 },407 {408 "path": "+brca/@model/init_model.m",409 "sha256": "c3a98eae9ca0d98101b3e22437219bfbc58b7bab61c27a5ca3920ddb4ac2bd90",410 "language": "MATLAB",411 "lines": 80,412 "truncated": false,413 "block": 11,414 "row": 19445415 },416 {417 "path": "+brca/@model/model.m",418 "sha256": "92ca4a268bff60664e5570cc26060c0ff480cae37341fac47dca3e9c16069f28",419 "language": "MATLAB",420 "lines": 166,421 "truncated": false,422 "block": 11,423 "row": 23405424 },425 {426 "path": "+brca/@model/orthogonalise.m",427 "sha256": "6f1803ff4c99cd17782b107d7534779f4afd892e59f0ab03f5f2ff5a466c11d0",428 "language": "MATLAB",429 "lines": 65,430 "truncated": false,431 "block": 11,432 "row": 19260433 },434 {435 "path": "+brca/@model/plot.m",436 "sha256": "3d2ccf3434387909e75b67ebaf40966b516772d0e1eaa24ea36ef956f83ce967",437 "language": "MATLAB",438 "lines": 175,439 "truncated": false,440 "block": 11,441 "row": 21711442 },443 {444 "path": "+brca/@model/private/gn_scale_U.m",445 "sha256": "65ca195149ff540c0ea0632b7c92f28afe3dcf95ada9d9d42ec6b2eea1ec8b90",446 "language": "MATLAB",447 "lines": 102,448 "truncated": false,449 "block": 11,450 "row": 21059451 },452 {453 "path": "+brca/@model/private/ortho_matrix.m",454 "sha256": "97279f67bf8594441a743033732567114f02d77d634826f76c909f0eed5f41ec",455 "language": "MATLAB",456 "lines": 22,457 "truncated": false,458 "block": 11,459 "row": 16047460 },461 {462 "path": "+brca/@model/train_internal.m",463 "sha256": "84cc44e4aaa0d689027071856310f8e36804e6cb973a71f305a8069fdf25cd7a",464 "language": "MATLAB",465 "lines": 67,466 "truncated": false,467 "block": 11,468 "row": 18070469 },470 {471 "path": "+brca/@model/update_latent.m",472 "sha256": "c50b7797b3aca358c86ca8bf63c5d92b2c4d55c2a3b6dd446ea0642211c54602",473 "language": "MATLAB",474 "lines": 74,475 "truncated": false,476 "block": 11,477 "row": 18749478 },479 {480 "path": "+brca/@model/update_latent_one.m",481 "sha256": "10875bc753d3492d2d9f4b024e1cdb8c1c5b33e5b10984635c8544a69aa24884",482 "language": "MATLAB",483 "lines": 32,484 "truncated": false,485 "block": 11,486 "row": 17061487 },488 {489 "path": "+brca/@model/update_latent_precision.m",490 "sha256": "d7149c0b221afa9312d49b7b077c609d9f4d19b06efed66070895fcf5134a948",491 "language": "MATLAB",492 "lines": 50,493 "truncated": false,494 "block": 11,495 "row": 18259496 },497 {498 "path": "+brca/@model/update_mean.m",499 "sha256": "a0444186f066040530eb47d9820a71d4378207d03b23af0ebafff0d17a7c003a",500 "language": "MATLAB",501 "lines": 118,502 "truncated": false,503 "block": 11,504 "row": 21625505 },506 {507 "path": "+brca/@model/update_model.m",508 "sha256": "40b2fb0b2c6f9f86dc60d9e59bbcc72d53fe427183c85aaef2fd62abf651c2ef",509 "language": "MATLAB",510 "lines": 49,511 "truncated": false,512 "block": 11,513 "row": 16829514 },515 {516 "path": "+brca/@model/update_residual_precision.m",517 "sha256": "60769525fb82ad9afcf06b914704a72d4aa78f446a32c5e56458813f3197e9ff",518 "language": "MATLAB",519 "lines": 61,520 "truncated": false,521 "block": 11,522 "row": 19216523 },524 {525 "path": "+brca/@model/update_subspace.m",526 "sha256": "8a9b34369960f4b4515a836c383811132793b48d1f00879cd05ef9c921017a44",527 "language": "MATLAB",528 "lines": 95,529 "truncated": false,530 "block": 11,531 "row": 19925532 },533 {534 "path": "LICENSE",535 "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",536 "language": "License",537 "lines": 674,538 "truncated": false,539 "block": 1,540 "row": 2235541 },542 {543 "path": "README.md",544 "sha256": "e85bc1d41e55c203bcd9b6ab3f77e169493a3bd76ede28d4c42de4744b73cf9c",545 "language": "Text",546 "lines": 3,547 "truncated": false,548 "block": 13,549 "row": 5990550 }551 ]552}