OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/sulab/drugmechdb",4 "url": "https://github.com/SuLab/DrugMechDB",5 "host": "github.com",6 "commit": "aef224217071216748740c10faeb6db8e3f15901",7 "license": "CC0-1.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499",14 "language": "License",15 "lines": 121,16 "truncated": false,17 "block": 1,18 "row": 221019 },20 {21 "path": "README.md",22 "sha256": "28ad60a62b72c95dfa60b57976b3e3f16f19d7389c8a38b3248a17ace386459a",23 "language": "Text",24 "lines": 151,25 "truncated": false,26 "block": 9,27 "row": 1469628 },29 {30 "path": "data_analysis/Top_Metapaths_Sankey.ipynb",31 "sha256": "f3d29512f989d41e437ec3e5adf85ab6bf74ab9ec9b23f011ee315af7170d4e6",32 "language": "Jupyter",33 "lines": 222,34 "truncated": false,35 "block": 9,36 "row": 243437 },38 {39 "path": "data_analysis/dmdb_mrn_bootstrap_analysis.ipynb",40 "sha256": "f1eb858a228da8f44638ad4ba60796baaa0c9927c5a0996bb8d9937652a51fbd",41 "language": "Jupyter",42 "lines": 259,43 "truncated": false,44 "block": 9,45 "row": 248646 },47 {48 "path": "data_analysis/figures_DMDB_manuscript.ipynb",49 "sha256": "f42d65c7f67f02261e440f7aff0c78d3d1b20f95ed9f4c691ab7b60dde5335d9",50 "language": "Jupyter",51 "lines": 671,52 "truncated": false,53 "block": 9,54 "row": 259155 },56 {57 "path": "data_tools/data_tools/__init__.py",58 "sha256": "279ee10af65a4f3a4dba045c52f9027c3179b0609ff124f5ba2ce6070f4b29c3",59 "language": "Python",60 "lines": 2,61 "truncated": false,62 "block": 9,63 "row": 634864 },65 {66 "path": "data_tools/data_tools/df_processing.py",67 "sha256": "94c861236bd4e6482cd7e8df92cf0141383ac220d8e17cfde4e05f5f35dbc46f",68 "language": "Python",69 "lines": 345,70 "truncated": false,71 "block": 9,72 "row": 1123873 },74 {75 "path": "data_tools/data_tools/files/__init__.py",76 "sha256": "2cf4f745c9108fd310d85f891300dfe5c95822d09b41df4aa05c0513671e7337",77 "language": "Python",78 "lines": 16,79 "truncated": false,80 "block": 9,81 "row": 653582 },83 {84 "path": "data_tools/data_tools/files/_analysis.py",85 "sha256": "839a360dcb2c8b22d329920b1e651221df1d314b4ff314e56aa29d0279229509",86 "language": "Python",87 "lines": 151,88 "truncated": false,89 "block": 9,90 "row": 931791 },92 {93 "path": "data_tools/data_tools/files/_pathing.py",94 "sha256": "a223613267e9642d28da40e425a7e75766b0ff099397ccfb7b24eb640c1c8aad",95 "language": "Python",96 "lines": 15,97 "truncated": false,98 "block": 9,99 "row": 6586100 },101 {102 "path": "data_tools/data_tools/files/_processing.py",103 "sha256": "67c6233411af344d7a49f725a098d1e8254ec4928039239b3831c01e0148bfb7",104 "language": "Python",105 "lines": 35,106 "truncated": false,107 "block": 9,108 "row": 7190109 },110 {111 "path": "data_tools/data_tools/files/_retrieval.py",112 "sha256": "3eb6a3b15589ae759268bbd165c327d47c4faee0f3eae16e826bf131c3eabbfd",113 "language": "Python",114 "lines": 176,115 "truncated": false,116 "block": 9,117 "row": 10007118 },119 {120 "path": "data_tools/data_tools/graphs/__init__.py",121 "sha256": "a931339208d99ebf9de82d3cc7c919a0dc8fc4e0be037927c067ff9a2c89d7f7",122 "language": "Python",123 "lines": 15,124 "truncated": false,125 "block": 9,126 "row": 6536127 },128 {129 "path": "data_tools/data_tools/graphs/_edge_processing.py",130 "sha256": "9757510a2bc908f8f699f6d9e85dde3f2c5ae082c8035ac9cf2cca48b816d714",131 "language": "Python",132 "lines": 142,133 "truncated": false,134 "block": 9,135 "row": 9767136 },137 {138 "path": "data_tools/data_tools/graphs/_graphs.py",139 "sha256": "b186b08a8975d1964bd90a56f7c8b80f1414a76a2a7837c265ca03b5c953a9e9",140 "language": "Python",141 "lines": 534,142 "truncated": false,143 "block": 9,144 "row": 11865145 },146 {147 "path": "data_tools/data_tools/graphs/_metapaths.py",148 "sha256": "1a9c3be5f144f607fcd3096c9d5dbe5af6ee45b7af466ba577e30afc13ab9f6b",149 "language": "Python",150 "lines": 356,151 "truncated": false,152 "block": 9,153 "row": 11332154 },155 {156 "path": "data_tools/data_tools/ml.py",157 "sha256": "64017593408508f171dbbac1c44facb83b50457144b722d541f02c14fd98ba99",158 "language": "Python",159 "lines": 111,160 "truncated": false,161 "block": 9,162 "row": 8719163 },164 {165 "path": "data_tools/data_tools/obo_processing.py",166 "sha256": "4c7630c95b3c7303e59c5ab1b0d5d446c4a4df72d90e5091925b579c4137f1d8",167 "language": "Python",168 "lines": 568,169 "truncated": false,170 "block": 9,171 "row": 11930172 },173 {174 "path": "data_tools/data_tools/plotting/__init__.py",175 "sha256": "2072feb3e790b906d2908ab0fd5e107fd69c067a411c0f38c0c2909b076f4ec3",176 "language": "Python",177 "lines": 16,178 "truncated": false,179 "block": 9,180 "row": 6502181 },182 {183 "path": "data_tools/data_tools/plotting/_graphs.py",184 "sha256": "ff485ed293dff76f315d707a7c52c600f02767ec6a9a8342a3469c2e92246295",185 "language": "Python",186 "lines": 552,187 "truncated": false,188 "block": 9,189 "row": 12014190 },191 {192 "path": "data_tools/data_tools/plotting/_ml.py",193 "sha256": "8ca81d40573ab8b1e0102e17be967d261116de266f632411c0f64579af5a9b02",194 "language": "Python",195 "lines": 164,196 "truncated": false,197 "block": 9,198 "row": 9657199 },200 {201 "path": "data_tools/data_tools/plotting/_std.py",202 "sha256": "155c03b9e475dab4d0913e4d0f581ced54e730995f31c438a239880905296ceb",203 "language": "Python",204 "lines": 91,205 "truncated": false,206 "block": 9,207 "row": 8737208 },209 {210 "path": "data_tools/data_tools/plotting/_venn.py",211 "sha256": "790096ae9f290fed5ad002a3453a2c61a61d0d981db4c53e0f37c353dbf04271",212 "language": "Python",213 "lines": 80,214 "truncated": false,215 "block": 9,216 "row": 8536217 },218 {219 "path": "data_tools/data_tools/wiki.py",220 "sha256": "70a8ee0600174f33298d94e2a5928223e8aefc3b3a2e62f9667b87351a85c071",221 "language": "Python",222 "lines": 109,223 "truncated": false,224 "block": 9,225 "row": 9013226 },227 {228 "path": "data_tools/demo/Graph_Drawing_Demo.ipynb",229 "sha256": "73349428cf034502ff710be0b713be7a2a5394ead17ace4ab6d55d7024b74a91",230 "language": "Jupyter",231 "lines": 354,232 "truncated": false,233 "block": 9,234 "row": 2514235 },236 {237 "path": "data_tools/setup.py",238 "sha256": "ec6b307ce6635862d933b65cc4083153ddb0acfc6265e2906d74ef80c8dba46b",239 "language": "Python",240 "lines": 28,241 "truncated": false,242 "block": 9,243 "row": 6837244 },245 {246 "path": "jekyll.sh",247 "sha256": "59befc38718d3ad7a9dcc3aeaf5415f27455cdc844ca8ca7d181880dad2e92f4",248 "language": "Shell",249 "lines": 3,250 "truncated": false,251 "block": 9,252 "row": 13892253 },254 {255 "path": "js/customscripts.js",256 "sha256": "220a75ef8016ec03c572fc182db32b90bafad709dde10981ebfebc741a7a05bd",257 "language": "JavaScript",258 "lines": 54,259 "truncated": false,260 "block": 9,261 "row": 2044262 },263 {264 "path": "js/jekyll-search.js",265 "sha256": "1ea4bded06691c376d65ab587b11e20c55d85aeefbe84da41fbc07359b9bb17d",266 "language": "JavaScript",267 "lines": 1,268 "truncated": false,269 "block": 1,270 "row": 1309271 },272 {273 "path": "js/jquery.ba-throttle-debounce.min.js",274 "sha256": "fa7b84bb6e37fba06f79793937e55baf6ebc1bee051e350e11c7ca681a9f3db7",275 "language": "JavaScript",276 "lines": 9,277 "truncated": false,278 "block": 1,279 "row": 746280 },281 {282 "path": "js/jquery.navgoco.min.js",283 "sha256": "d8e1e03e6b3df304856951f35a794cbca21ee52d27ec82a3ef423f400391203a",284 "language": "JavaScript",285 "lines": 8,286 "truncated": false,287 "block": 1,288 "row": 1215289 },290 {291 "path": "js/jquery.shuffle.min.js",292 "sha256": "4b22a2a4b7e0a58254ffe6a4fe47df342ee03fa9fbfbdad6c187a8c05ec40f17",293 "language": "JavaScript",294 "lines": 1588,295 "truncated": false,296 "block": 1,297 "row": 1534298 },299 {300 "path": "js/toc.js",301 "sha256": "27cb4509daa5cdf65394c33a24eb267681952697a9024c008f7cf54e1996a747",302 "language": "JavaScript",303 "lines": 82,304 "truncated": false,305 "block": 9,306 "row": 2052307 },308 {309 "path": "parse.py",310 "sha256": "3bfcda67e799b3a593b1a8d3169c22548f966f643d717f6b926396e7454ef39e",311 "language": "Python",312 "lines": 303,313 "truncated": false,314 "block": 9,315 "row": 11167316 },317 {318 "path": "path_visualization.ipynb",319 "sha256": "7f771ad4c7e0544fe756867f45b622fd7f9bfcb9c66d28448a1848367a62d9e2",320 "language": "Jupyter",321 "lines": 143,322 "truncated": false,323 "block": 9,324 "row": 2303325 },326 {327 "path": "scripts/update_occurs_in_preserving_format.py",328 "sha256": "b7c8c55631a28ec937516a6693f1fc6eaa2560b3b49379e9f6fdc36c9630bd18",329 "language": "Python",330 "lines": 158,331 "truncated": false,332 "block": 9,333 "row": 9497334 },335 {336 "path": "testfile.py",337 "sha256": "5a3ce0a07d5615aefdc1cf00ecee9432e25fa2890b7e072250d70231b2870104",338 "language": "Python",339 "lines": 2,340 "truncated": false,341 "block": 9,342 "row": 6090343 },344 {345 "path": "utils/build_indications.py",346 "sha256": "672aa93bd4d805783e4bf99e4039cb45bac640176a547806cd2f6fd756bed165",347 "language": "Python",348 "lines": 646,349 "truncated": false,350 "block": 9,351 "row": 11937352 },353 {354 "path": "utils/convert_to_biolink.py",355 "sha256": "0ce6ccf4095d48a95dde0a4d0b763c6bd4daa5c622180115ca95e0fe6adfdef9",356 "language": "Python",357 "lines": 61,358 "truncated": false,359 "block": 9,360 "row": 8158361 },362 {363 "path": "utils/json_yaml_convert.py",364 "sha256": "cc1caa2a72d731e54fa6ed11b29c50af87400e7a89655de10687ba7b9680896a",365 "language": "Python",366 "lines": 91,367 "truncated": false,368 "block": 9,369 "row": 8203370 },371 {372 "path": "utils/pathtester.py",373 "sha256": "cba585543f73e2f38c2b651ff55276afdd0bbbabec8cb75eac00351d1e53db23",374 "language": "Python",375 "lines": 205,376 "truncated": false,377 "block": 9,378 "row": 10374379 },380 {381 "path": "utils/plot_paths.py",382 "sha256": "f0f067108f4d4bfee783ac2d8e52b38516de1e5498f570a7c84f06122df68b66",383 "language": "Python",384 "lines": 124,385 "truncated": false,386 "block": 9,387 "row": 9068388 },389 {390 "path": "utils/test_indications.py",391 "sha256": "c35dde2a2a89be2a0c87a5a54130ee4becdb155734a1f2523a604c5b867cd01a",392 "language": "Python",393 "lines": 14,394 "truncated": false,395 "block": 9,396 "row": 6548397 },398 {399 "path": "utils/xls_to_json.py",400 "sha256": "d8ec39550dddb0bff8561a48747294681e375f33e8df6d92fe40ebe31966baea",401 "language": "Python",402 "lines": 120,403 "truncated": false,404 "block": 9,405 "row": 8764406 }407 ]408}