OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/allodi-lab/cpg_modeling_als",4 "url": "https://github.com/Allodi-Lab/cpg_modeling_als/tree/v.1.0",5 "host": "github.com",6 "commit": "a90889326f926eb08273f22b68c684aa97ea31dd",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "CPG_ALS_lab_git/Evaluation_scripts/calculate_stability_metrics.py",13 "sha256": "a5dd3d9b94646ed285ff8129e4cdf5b0c58b6a0d81c52b8cf379a5e7635006bb",14 "language": "Python",15 "lines": 224,16 "truncated": false,17 "block": 15,18 "row": 2149119 },20 {21 "path": "CPG_ALS_lab_git/Evaluation_scripts/calculate_stability_metrics_all_trials.py",22 "sha256": "e2ce61fd4a702226c8f70b2ef4c065f846f02924b688acb4a61c5c292948d7a0",23 "language": "Python",24 "lines": 459,25 "truncated": false,26 "block": 15,27 "row": 2527028 },29 {30 "path": "CPG_ALS_lab_git/Evaluation_scripts/compare_metrics_across_timepoints.py",31 "sha256": "216d48ba935eee42e9150d9e3b7e87d06b64b021a5e0fe495e7af96902f85cee",32 "language": "Python",33 "lines": 721,34 "truncated": false,35 "block": 16,36 "row": 68837 },38 {39 "path": "CPG_ALS_lab_git/Evaluation_scripts/compare_stability_metrics_indiv_trials.py",40 "sha256": "f3717cc692ac3ca0ec6d49466303b73d94189299c5969661bfb86094ccddb137",41 "language": "Python",42 "lines": 379,43 "truncated": false,44 "block": 15,45 "row": 2403646 },47 {48 "path": "CPG_ALS_lab_git/Evaluation_scripts/plot_timepoint_comparison.py",49 "sha256": "f2acc506b3a504135cd41bde64326b21b5dbe95ada03a1a4739fa2001fa1d280",50 "language": "Python",51 "lines": 154,52 "truncated": false,53 "block": 15,54 "row": 2010955 },56 {57 "path": "CPG_ALS_lab_git/In_vivo_analysis/data_analysis.R",58 "sha256": "9e89f28787834551871469606961974935951db63834e582bae4cd4bf412bbe9",59 "language": "R",60 "lines": 41,61 "truncated": false,62 "block": 16,63 "row": 229464 },65 {66 "path": "CPG_ALS_lab_git/Installer_files/create_aeif_cond_beta.py",67 "sha256": "f0e6d5fd3c428f7ca73386ea7689f048155646f7413e3943704ac711045983af",68 "language": "Python",69 "lines": 19,70 "truncated": false,71 "block": 15,72 "row": 733173 },74 {75 "path": "CPG_ALS_lab_git/calculate_stability_metrics.py",76 "sha256": "94bf4be28c29e2f03a3a2e9234710f1a58d1bb43552e28aee42b5fe621f8eae4",77 "language": "Python",78 "lines": 177,79 "truncated": false,80 "block": 15,81 "row": 2010882 },83 {84 "path": "CPG_ALS_lab_git/connect_populations.py",85 "sha256": "fed3202105f178819d59889bcf3bf424d05c7566e53775967afa8e30ffee860b",86 "language": "Python",87 "lines": 216,88 "truncated": false,89 "block": 15,90 "row": 2201891 },92 {93 "path": "CPG_ALS_lab_git/create_cpg.py",94 "sha256": "02dfb506067dc9a459a8578b8b6113aea4716da2724c0d0452edba39502382de",95 "language": "Python",96 "lines": 757,97 "truncated": false,98 "block": 16,99 "row": 1085100 },101 {102 "path": "CPG_ALS_lab_git/create_cpg_rg_layer.py",103 "sha256": "4871f44aef4a1ee2a8132cdc0df2d164e69f7c658234ca6cb9acd58ce17fdadb",104 "language": "Python",105 "lines": 461,106 "truncated": false,107 "block": 16,108 "row": 348109 },110 {111 "path": "CPG_ALS_lab_git/create_cpg_rg_layer_optimize.py",112 "sha256": "a1daec6f37b18b83daac1f5b98172d6104b0db1c01602175a64f804d16781ce7",113 "language": "Python",114 "lines": 322,115 "truncated": false,116 "block": 15,117 "row": 25108118 },119 {120 "path": "CPG_ALS_lab_git/create_exc_inter_pop.py",121 "sha256": "281d066db63f3e49c517f6711b272b609e0f8df75dd6df8357e7612c508047c2",122 "language": "Python",123 "lines": 67,124 "truncated": false,125 "block": 15,126 "row": 15203127 },128 {129 "path": "CPG_ALS_lab_git/create_ext_rg.py",130 "sha256": "3f9220a1d1ed6e834848fa4805d0531fc582c391247b52592d1f8acf85311285",131 "language": "Python",132 "lines": 113,133 "truncated": false,134 "block": 15,135 "row": 21313136 },137 {138 "path": "CPG_ALS_lab_git/create_flx_rg.py",139 "sha256": "8a46ba0a33c2403e495ae90e8ddbd14bd5a549145c1af881c9c0058e42d869e1",140 "language": "Python",141 "lines": 113,142 "truncated": false,143 "block": 15,144 "row": 21310145 },146 {147 "path": "CPG_ALS_lab_git/create_inh_inter_pop.py",148 "sha256": "8de03ecd490e3e3cb1285a386b9600c916cc46d9d7fa0a91d9521144c9b444f7",149 "language": "Python",150 "lines": 56,151 "truncated": false,152 "block": 15,153 "row": 16161154 },155 {156 "path": "CPG_ALS_lab_git/create_interneuron_pop.py",157 "sha256": "91c1f903a3080366b41fa1fb8132ce19c66c693df5a3db1fd73f5da00ae6eecd",158 "language": "Python",159 "lines": 69,160 "truncated": false,161 "block": 15,162 "row": 18408163 },164 {165 "path": "CPG_ALS_lab_git/create_mnp.py",166 "sha256": "fb044457ab07287e787a7b678420d7bc3a8200cf291395c0c199cc7dd67b6477",167 "language": "Python",168 "lines": 63,169 "truncated": false,170 "block": 15,171 "row": 14561172 },173 {174 "path": "CPG_ALS_lab_git/isolated_extensor.py",175 "sha256": "c86e20573d3ea36ff9e02e0b39176213093ea4c6e152dfff5c061f35f65672e7",176 "language": "Python",177 "lines": 106,178 "truncated": false,179 "block": 15,180 "row": 17356181 },182 {183 "path": "CPG_ALS_lab_git/isolated_flexor.py",184 "sha256": "0f51606fa1792168cf0892c71cb7eb28284c556289e700e848c6404dd43ba3a5",185 "language": "Python",186 "lines": 106,187 "truncated": false,188 "block": 15,189 "row": 17354190 },191 {192 "path": "CPG_ALS_lab_git/pca.py",193 "sha256": "b59de14ada2b50ee170c2dd4555dce872622b3330bcfa98f485526cbab9b696c",194 "language": "Python",195 "lines": 73,196 "truncated": false,197 "block": 15,198 "row": 14528199 },200 {201 "path": "CPG_ALS_lab_git/phase_ordering.py",202 "sha256": "24a36ce91fce4658e4a0f01dcf7be1ae1206f8cbe08926ce2c146b350ff3b824",203 "language": "Python",204 "lines": 125,205 "truncated": false,206 "block": 15,207 "row": 20051208 },209 {210 "path": "CPG_ALS_lab_git/population_functions.py",211 "sha256": "c611d79ee9b3cffdcad64e3f5a6665c9898610908979e27bd5fc3cd9fdc86b88",212 "language": "Python",213 "lines": 289,214 "truncated": false,215 "block": 15,216 "row": 22507217 },218 {219 "path": "CPG_ALS_lab_git/rg_optimizer.py",220 "sha256": "1b7b50e914ea568afbe47df65ddd8febd36d9e5ea615ca2f5bf61676210dc123",221 "language": "Python",222 "lines": 79,223 "truncated": false,224 "block": 15,225 "row": 13804226 },227 {228 "path": "CPG_ALS_lab_git/run_all_timepoints.sh",229 "sha256": "cf99b950cc90dbac1c693ddb2b41a5c43a452d973beb1698a8c78dce44a77761",230 "language": "Shell",231 "lines": 26,232 "truncated": false,233 "block": 16,234 "row": 5608235 },236 {237 "path": "CPG_ALS_lab_git/run_extensor_provide_seed.sh",238 "sha256": "33699e664a124fa911eefe04678b2e8e2cd3cae0198f2379ac8474f10a715f31",239 "language": "Shell",240 "lines": 15,241 "truncated": false,242 "block": 16,243 "row": 5045244 },245 {246 "path": "CPG_ALS_lab_git/run_flexor_provide_seed.sh",247 "sha256": "48e56bdf7396d714343f0f15fc15657c7828b5dd1f9eb08688686350137d3727",248 "language": "Shell",249 "lines": 15,250 "truncated": false,251 "block": 16,252 "row": 5043253 },254 {255 "path": "CPG_ALS_lab_git/run_rg_layer_provide_seed.sh",256 "sha256": "e0de2b64e1dbc4ff5c38e7c5e48350a404d375751da2e9b6b9fbfc52fa5e0a72",257 "language": "Shell",258 "lines": 15,259 "truncated": false,260 "block": 16,261 "row": 5051262 },263 {264 "path": "CPG_ALS_lab_git/run_trials_provide_seeds.sh",265 "sha256": "693b4129ff9f6210d4da297a7fc65f0a0b4652f598348b480f49519f6d5d8dfa",266 "language": "Shell",267 "lines": 16,268 "truncated": false,269 "block": 16,270 "row": 5076271 },272 {273 "path": "CPG_ALS_lab_git/send_receive_feedback.py",274 "sha256": "709ce5023e02c4acd5641e44680ed2af1db84f1178561ed1e924e60b72fb72b2",275 "language": "Python",276 "lines": 90,277 "truncated": false,278 "block": 15,279 "row": 15195280 },281 {282 "path": "CPG_ALS_lab_git/set_network_params.py",283 "sha256": "1c4ab211ef872c25b5165793c7ca7588fd2bf8765639893f59c7e20ea11df91b",284 "language": "Python",285 "lines": 424,286 "truncated": false,287 "block": 15,288 "row": 25801289 },290 {291 "path": "CPG_ALS_lab_git/start_simulation.py",292 "sha256": "07b32ead6a7fe4faabff6077b17a05b4c07f06274d2f79c573b2325eecf1d3b7",293 "language": "Python",294 "lines": 35,295 "truncated": false,296 "block": 15,297 "row": 7988298 },299 {300 "path": "LICENSE",301 "sha256": "1184c0390a879a07d2a5279a2f057a34c7233735ba18b46c2c462d1852f0bd26",302 "language": "License",303 "lines": 21,304 "truncated": false,305 "block": 14,306 "row": 16843307 },308 {309 "path": "README.md",310 "sha256": "8a459d83974fead34ec94c5460d3778a75f97bde264a256d1c5ac2f444efb447",311 "language": "Text",312 "lines": 48,313 "truncated": false,314 "block": 16,315 "row": 7549316 }317 ]318}