Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__allodi-lab__cpg_modeling_als.json318 linesDownload Raw Back to 13
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/allodi-lab/cpg_modeling_als",4 "url": "https://github.com/Allodi-Lab/cpg_modeling_als/tree/v.1.0",5 "host": "github.com",6 "commit": "a90889326f926eb08273f22b68c684aa97ea31dd",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "CPG_ALS_lab_git/Evaluation_scripts/calculate_stability_metrics.py",13   "sha256": "a5dd3d9b94646ed285ff8129e4cdf5b0c58b6a0d81c52b8cf379a5e7635006bb",14   "language": "Python",15   "lines": 224,16   "truncated": false,17   "block": 15,18   "row": 2149119  },20  {21   "path": "CPG_ALS_lab_git/Evaluation_scripts/calculate_stability_metrics_all_trials.py",22   "sha256": "e2ce61fd4a702226c8f70b2ef4c065f846f02924b688acb4a61c5c292948d7a0",23   "language": "Python",24   "lines": 459,25   "truncated": false,26   "block": 15,27   "row": 2527028  },29  {30   "path": "CPG_ALS_lab_git/Evaluation_scripts/compare_metrics_across_timepoints.py",31   "sha256": "216d48ba935eee42e9150d9e3b7e87d06b64b021a5e0fe495e7af96902f85cee",32   "language": "Python",33   "lines": 721,34   "truncated": false,35   "block": 16,36   "row": 68837  },38  {39   "path": "CPG_ALS_lab_git/Evaluation_scripts/compare_stability_metrics_indiv_trials.py",40   "sha256": "f3717cc692ac3ca0ec6d49466303b73d94189299c5969661bfb86094ccddb137",41   "language": "Python",42   "lines": 379,43   "truncated": false,44   "block": 15,45   "row": 2403646  },47  {48   "path": "CPG_ALS_lab_git/Evaluation_scripts/plot_timepoint_comparison.py",49   "sha256": "f2acc506b3a504135cd41bde64326b21b5dbe95ada03a1a4739fa2001fa1d280",50   "language": "Python",51   "lines": 154,52   "truncated": false,53   "block": 15,54   "row": 2010955  },56  {57   "path": "CPG_ALS_lab_git/In_vivo_analysis/data_analysis.R",58   "sha256": "9e89f28787834551871469606961974935951db63834e582bae4cd4bf412bbe9",59   "language": "R",60   "lines": 41,61   "truncated": false,62   "block": 16,63   "row": 229464  },65  {66   "path": "CPG_ALS_lab_git/Installer_files/create_aeif_cond_beta.py",67   "sha256": "f0e6d5fd3c428f7ca73386ea7689f048155646f7413e3943704ac711045983af",68   "language": "Python",69   "lines": 19,70   "truncated": false,71   "block": 15,72   "row": 733173  },74  {75   "path": "CPG_ALS_lab_git/calculate_stability_metrics.py",76   "sha256": "94bf4be28c29e2f03a3a2e9234710f1a58d1bb43552e28aee42b5fe621f8eae4",77   "language": "Python",78   "lines": 177,79   "truncated": false,80   "block": 15,81   "row": 2010882  },83  {84   "path": "CPG_ALS_lab_git/connect_populations.py",85   "sha256": "fed3202105f178819d59889bcf3bf424d05c7566e53775967afa8e30ffee860b",86   "language": "Python",87   "lines": 216,88   "truncated": false,89   "block": 15,90   "row": 2201891  },92  {93   "path": "CPG_ALS_lab_git/create_cpg.py",94   "sha256": "02dfb506067dc9a459a8578b8b6113aea4716da2724c0d0452edba39502382de",95   "language": "Python",96   "lines": 757,97   "truncated": false,98   "block": 16,99   "row": 1085100  },101  {102   "path": "CPG_ALS_lab_git/create_cpg_rg_layer.py",103   "sha256": "4871f44aef4a1ee2a8132cdc0df2d164e69f7c658234ca6cb9acd58ce17fdadb",104   "language": "Python",105   "lines": 461,106   "truncated": false,107   "block": 16,108   "row": 348109  },110  {111   "path": "CPG_ALS_lab_git/create_cpg_rg_layer_optimize.py",112   "sha256": "a1daec6f37b18b83daac1f5b98172d6104b0db1c01602175a64f804d16781ce7",113   "language": "Python",114   "lines": 322,115   "truncated": false,116   "block": 15,117   "row": 25108118  },119  {120   "path": "CPG_ALS_lab_git/create_exc_inter_pop.py",121   "sha256": "281d066db63f3e49c517f6711b272b609e0f8df75dd6df8357e7612c508047c2",122   "language": "Python",123   "lines": 67,124   "truncated": false,125   "block": 15,126   "row": 15203127  },128  {129   "path": "CPG_ALS_lab_git/create_ext_rg.py",130   "sha256": "3f9220a1d1ed6e834848fa4805d0531fc582c391247b52592d1f8acf85311285",131   "language": "Python",132   "lines": 113,133   "truncated": false,134   "block": 15,135   "row": 21313136  },137  {138   "path": "CPG_ALS_lab_git/create_flx_rg.py",139   "sha256": "8a46ba0a33c2403e495ae90e8ddbd14bd5a549145c1af881c9c0058e42d869e1",140   "language": "Python",141   "lines": 113,142   "truncated": false,143   "block": 15,144   "row": 21310145  },146  {147   "path": "CPG_ALS_lab_git/create_inh_inter_pop.py",148   "sha256": "8de03ecd490e3e3cb1285a386b9600c916cc46d9d7fa0a91d9521144c9b444f7",149   "language": "Python",150   "lines": 56,151   "truncated": false,152   "block": 15,153   "row": 16161154  },155  {156   "path": "CPG_ALS_lab_git/create_interneuron_pop.py",157   "sha256": "91c1f903a3080366b41fa1fb8132ce19c66c693df5a3db1fd73f5da00ae6eecd",158   "language": "Python",159   "lines": 69,160   "truncated": false,161   "block": 15,162   "row": 18408163  },164  {165   "path": "CPG_ALS_lab_git/create_mnp.py",166   "sha256": "fb044457ab07287e787a7b678420d7bc3a8200cf291395c0c199cc7dd67b6477",167   "language": "Python",168   "lines": 63,169   "truncated": false,170   "block": 15,171   "row": 14561172  },173  {174   "path": "CPG_ALS_lab_git/isolated_extensor.py",175   "sha256": "c86e20573d3ea36ff9e02e0b39176213093ea4c6e152dfff5c061f35f65672e7",176   "language": "Python",177   "lines": 106,178   "truncated": false,179   "block": 15,180   "row": 17356181  },182  {183   "path": "CPG_ALS_lab_git/isolated_flexor.py",184   "sha256": "0f51606fa1792168cf0892c71cb7eb28284c556289e700e848c6404dd43ba3a5",185   "language": "Python",186   "lines": 106,187   "truncated": false,188   "block": 15,189   "row": 17354190  },191  {192   "path": "CPG_ALS_lab_git/pca.py",193   "sha256": "b59de14ada2b50ee170c2dd4555dce872622b3330bcfa98f485526cbab9b696c",194   "language": "Python",195   "lines": 73,196   "truncated": false,197   "block": 15,198   "row": 14528199  },200  {201   "path": "CPG_ALS_lab_git/phase_ordering.py",202   "sha256": "24a36ce91fce4658e4a0f01dcf7be1ae1206f8cbe08926ce2c146b350ff3b824",203   "language": "Python",204   "lines": 125,205   "truncated": false,206   "block": 15,207   "row": 20051208  },209  {210   "path": "CPG_ALS_lab_git/population_functions.py",211   "sha256": "c611d79ee9b3cffdcad64e3f5a6665c9898610908979e27bd5fc3cd9fdc86b88",212   "language": "Python",213   "lines": 289,214   "truncated": false,215   "block": 15,216   "row": 22507217  },218  {219   "path": "CPG_ALS_lab_git/rg_optimizer.py",220   "sha256": "1b7b50e914ea568afbe47df65ddd8febd36d9e5ea615ca2f5bf61676210dc123",221   "language": "Python",222   "lines": 79,223   "truncated": false,224   "block": 15,225   "row": 13804226  },227  {228   "path": "CPG_ALS_lab_git/run_all_timepoints.sh",229   "sha256": "cf99b950cc90dbac1c693ddb2b41a5c43a452d973beb1698a8c78dce44a77761",230   "language": "Shell",231   "lines": 26,232   "truncated": false,233   "block": 16,234   "row": 5608235  },236  {237   "path": "CPG_ALS_lab_git/run_extensor_provide_seed.sh",238   "sha256": "33699e664a124fa911eefe04678b2e8e2cd3cae0198f2379ac8474f10a715f31",239   "language": "Shell",240   "lines": 15,241   "truncated": false,242   "block": 16,243   "row": 5045244  },245  {246   "path": "CPG_ALS_lab_git/run_flexor_provide_seed.sh",247   "sha256": "48e56bdf7396d714343f0f15fc15657c7828b5dd1f9eb08688686350137d3727",248   "language": "Shell",249   "lines": 15,250   "truncated": false,251   "block": 16,252   "row": 5043253  },254  {255   "path": "CPG_ALS_lab_git/run_rg_layer_provide_seed.sh",256   "sha256": "e0de2b64e1dbc4ff5c38e7c5e48350a404d375751da2e9b6b9fbfc52fa5e0a72",257   "language": "Shell",258   "lines": 15,259   "truncated": false,260   "block": 16,261   "row": 5051262  },263  {264   "path": "CPG_ALS_lab_git/run_trials_provide_seeds.sh",265   "sha256": "693b4129ff9f6210d4da297a7fc65f0a0b4652f598348b480f49519f6d5d8dfa",266   "language": "Shell",267   "lines": 16,268   "truncated": false,269   "block": 16,270   "row": 5076271  },272  {273   "path": "CPG_ALS_lab_git/send_receive_feedback.py",274   "sha256": "709ce5023e02c4acd5641e44680ed2af1db84f1178561ed1e924e60b72fb72b2",275   "language": "Python",276   "lines": 90,277   "truncated": false,278   "block": 15,279   "row": 15195280  },281  {282   "path": "CPG_ALS_lab_git/set_network_params.py",283   "sha256": "1c4ab211ef872c25b5165793c7ca7588fd2bf8765639893f59c7e20ea11df91b",284   "language": "Python",285   "lines": 424,286   "truncated": false,287   "block": 15,288   "row": 25801289  },290  {291   "path": "CPG_ALS_lab_git/start_simulation.py",292   "sha256": "07b32ead6a7fe4faabff6077b17a05b4c07f06274d2f79c573b2325eecf1d3b7",293   "language": "Python",294   "lines": 35,295   "truncated": false,296   "block": 15,297   "row": 7988298  },299  {300   "path": "LICENSE",301   "sha256": "1184c0390a879a07d2a5279a2f057a34c7233735ba18b46c2c462d1852f0bd26",302   "language": "License",303   "lines": 21,304   "truncated": false,305   "block": 14,306   "row": 16843307  },308  {309   "path": "README.md",310   "sha256": "8a459d83974fead34ec94c5460d3778a75f97bde264a256d1c5ac2f444efb447",311   "language": "Text",312   "lines": 48,313   "truncated": false,314   "block": 16,315   "row": 7549316  }317 ]318}