Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__alleninstitute__ipfx.json1263 linesDownload Raw Back to 29
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/alleninstitute/ipfx",4 "url": "https://github.com/AllenInstitute/ipfx",5 "host": "github.com",6 "commit": "c607a36e25618a6bb8ba5438c1cd945fb429e659",7 "license": "BSD-2-Clause",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": ".cookiecutter/update.sh",13   "sha256": "1e988785ce7f19613adfabaa6ffd516d623f23af3084841865b62d1af4574c2c",14   "language": "Shell",15   "lines": 15,16   "truncated": false,17   "block": 4,18   "row": 143119  },20  {21   "path": ".cookiecutter/update_from_repo.py",22   "sha256": "7c28f53435b0b84727b4284d3f11654c26592f8173b88ddc8d07c9bb641ec778",23   "language": "Python",24   "lines": 12,25   "truncated": false,26   "block": 3,27   "row": 1816828  },29  {30   "path": "LICENSE",31   "sha256": "381404adea4815fc3af7360bc3540e5a2d87126886c6ec2abe6052f045fb0938",32   "language": "License",33   "lines": 26,34   "truncated": false,35   "block": 6,36   "row": 202137  },38  {39   "path": "README.md",40   "sha256": "c26dbee4f1e21ad33dea4768644cac84279c16a8ae2ce4d70492ec2fdb5e2e3b",41   "language": "Text",42   "lines": 27,43   "truncated": false,44   "block": 8,45   "row": 975946  },47  {48   "path": "docker/run_tests_with_docker.sh",49   "sha256": "af53f3269ac513e560a59206b32afb60d1ea8422ee0b0372c749a151f2b33b8b",50   "language": "Shell",51   "lines": 31,52   "truncated": false,53   "block": 8,54   "row": 871255  },56  {57   "path": "docs/aibs_sphinx/buildPortalAssets.sh",58   "sha256": "6fdb93262aa45851de75c45b98f5cc56737eada0c6bf25e88b1201735d91b439",59   "language": "Shell",60   "lines": 8,61   "truncated": false,62   "block": 8,63   "row": 700164  },65  {66   "path": "docs/aibs_sphinx/static/external_assets/bundled.js",67   "sha256": "2a03ebee6e4de8d15253fc0d0a9e97608fde3e2809ffb4f181b6ea2489ac85f7",68   "language": "JavaScript",69   "lines": 1,70   "truncated": true,71   "block": 3,72   "row": 697873  },74  {75   "path": "docs/aibs_sphinx/static/external_assets/javascript/AC_RunActiveContent.js",76   "sha256": "dd4af212d2dce74565cb3360308141d23548e15a5a23d9a49c9cab69b55d95de",77   "language": "JavaScript",78   "lines": 292,79   "truncated": false,80   "block": 3,81   "row": 691982  },83  {84   "path": "docs/aibs_sphinx/static/external_assets/javascript/appConfig.js",85   "sha256": "145dcc1270e52c4bb464ecb0a0df54617c1c225da9f94d22488453ab97515f1a",86   "language": "JavaScript",87   "lines": 14,88   "truncated": false,89   "block": 3,90   "row": 679191  },92  {93   "path": "docs/aibs_sphinx/static/external_assets/javascript/browserVersions.js",94   "sha256": "93622474da7a70059c2116e2aa63470750d64cd7a2c14b2dde08c4264a8be746",95   "language": "JavaScript",96   "lines": 28,97   "truncated": false,98   "block": 3,99   "row": 6817100  },101  {102   "path": "docs/aibs_sphinx/static/external_assets/javascript/relatedData.js",103   "sha256": "c8de8745f47bd646c9c175357a6d085895e1de8d146b60a68ed5436a71d4b6ea",104   "language": "JavaScript",105   "lines": 5,106   "truncated": false,107   "block": 3,108   "row": 6742109  },110  {111   "path": "docs/conf.py",112   "sha256": "531589e030fc50a7d4680f541bfd5513531f188c609552a8dbf5645f8df37b7c",113   "language": "Python",114   "lines": 320,115   "truncated": false,116   "block": 7,117   "row": 3010118  },119  {120   "path": "docs/gallery/analysis_examples/all_analysis.py",121   "sha256": "f6d72a129413b5c35b8264b2cd750574c2c593b43ae52d8152063a42441561ad",122   "language": "Python",123   "lines": 32,124   "truncated": false,125   "block": 6,126   "row": 25030127  },128  {129   "path": "docs/gallery/analysis_examples/lsq_analysis.py",130   "sha256": "c190f7cbc6011b06314778aa670aab493421b96d7ec6f7e01205c170469ca15d",131   "language": "Python",132   "lines": 78,133   "truncated": false,134   "block": 6,135   "row": 33941136  },137  {138   "path": "docs/gallery/analysis_examples/ramp_analysis.py",139   "sha256": "7101fff17c8524258f73c36c54b10cdfcf58106c91c9f089167de1f89fddcd6b",140   "language": "Python",141   "lines": 74,142   "truncated": false,143   "block": 6,144   "row": 33784145  },146  {147   "path": "docs/gallery/analysis_examples/short_square_analysis.py",148   "sha256": "90de585f9601bf703373dc5bb7cb0d9a60fe605447b4bd8f9fc41c48554a141a",149   "language": "Python",150   "lines": 78,151   "truncated": false,152   "block": 6,153   "row": 34814154  },155  {156   "path": "docs/gallery/qc_examples/sweep_qc.py",157   "sha256": "4a8e7e01d3c14ce49b842dee25ab5366fe26af8d925d869b3b9e4774d8d8c463",158   "language": "Python",159   "lines": 43,160   "truncated": false,161   "block": 6,162   "row": 26919163  },164  {165   "path": "docs/gallery/spikes_examples/detect_spikes_single_sweep.py",166   "sha256": "3161771b360b310eab1d55d94c1b64017803aa2df8aaa01be105083336a18fed",167   "language": "Python",168   "lines": 41,169   "truncated": false,170   "block": 6,171   "row": 26671172  },173  {174   "path": "docs/gallery/spikes_examples/detect_spikes_single_sweep_window.py",175   "sha256": "cf0ac8b9574a6c9a7831da405695cca275719858d30ba66cf477ca2d34417a34",176   "language": "Python",177   "lines": 45,178   "truncated": false,179   "block": 6,180   "row": 28599181  },182  {183   "path": "docs/gallery/spikes_examples/estimate_params.py",184   "sha256": "a3a14c82e8bcad6f102956266f9bbafdf950cba3338fcf5c87bac9baaf496cce",185   "language": "Python",186   "lines": 51,187   "truncated": false,188   "block": 6,189   "row": 30042190  },191  {192   "path": "docs/gallery/spikes_examples/spike_train_features.py",193   "sha256": "290f5247a058fbfac8dd2b696a186a5df0d0869731565e62ae39bc6d0c079c8e",194   "language": "Python",195   "lines": 45,196   "truncated": false,197   "block": 6,198   "row": 26768199  },200  {201   "path": "ipfx/__init__.py",202   "sha256": "67e88d623b0258231f43bc45fb24de511b76dc7cc9dad79dd08e5bd5e09f1c63",203   "language": "Python",204   "lines": 6,205   "truncated": false,206   "block": 6,207   "row": 20904208  },209  {210   "path": "ipfx/_schemas.py",211   "sha256": "a53c1da17f684f65a0cf568cbc7f9bda71147000f14af5c61a179e1a562cb356",212   "language": "Python",213   "lines": 122,214   "truncated": false,215   "block": 6,216   "row": 41117217  },218  {219   "path": "ipfx/attach_metadata/__main__.py",220   "sha256": "a5a1dc3fed88cc9e8f737d5bc98249b7008494bf3b3c20cca5cc2f49fd1d4476",221   "language": "Python",222   "lines": 144,223   "truncated": false,224   "block": 6,225   "row": 38863226  },227  {228   "path": "ipfx/attach_metadata/_schemas.py",229   "sha256": "4ec0037814018df653042ee5b005cfe7434299351c6df2e8ed2775cb101b49b3",230   "language": "Python",231   "lines": 162,232   "truncated": false,233   "block": 6,234   "row": 38795235  },236  {237   "path": "ipfx/attach_metadata/sink/__init__.py",238   "sha256": "209ea254e2d1b53c628f2997d08d74b9908db79918ffa75ad3125a3cb563c1d2",239   "language": "Python",240   "lines": 17,241   "truncated": false,242   "block": 6,243   "row": 22667244  },245  {246   "path": "ipfx/attach_metadata/sink/dandi_yaml_sink.py",247   "sha256": "cc8783c5ed11c580152bd2c01339e91ebec526def07a2ba97ce9cc55243e4180",248   "language": "Python",249   "lines": 86,250   "truncated": false,251   "block": 6,252   "row": 34299253  },254  {255   "path": "ipfx/attach_metadata/sink/metadata_sink.py",256   "sha256": "a1c08f98c77b8e4cb2fa7c259c42de778ec85e33740a2d137b6ea261a6d7d70a",257   "language": "Python",258   "lines": 122,259   "truncated": false,260   "block": 6,261   "row": 38589262  },263  {264   "path": "ipfx/attach_metadata/sink/nwb2_sink.py",265   "sha256": "74eb00c070ac85f693e4733ac0847d7451aaaa4d2a58144680427860952a5f8c",266   "language": "Python",267   "lines": 237,268   "truncated": false,269   "block": 7,270   "row": 156271  },272  {273   "path": "ipfx/bin/generate_fx_input.py",274   "sha256": "99fbb5e368247908b9bd03d65a57a2a57a0a0012a15dc8914ce795d0d403cbcb",275   "language": "Python",276   "lines": 102,277   "truncated": false,278   "block": 6,279   "row": 36047280  },281  {282   "path": "ipfx/bin/generate_pipeline_input.py",283   "sha256": "73fb7448b0ec9f8c301a329f9e804ab61d2de800f0045763d921164e73fb7be1",284   "language": "Python",285   "lines": 56,286   "truncated": false,287   "block": 6,288   "row": 29607289  },290  {291   "path": "ipfx/bin/generate_qc_input.py",292   "sha256": "4ab6cbc412e33e7f81d61bfe09d5c2508ababe560f5addfa6376c65fb338cf2f",293   "language": "Python",294   "lines": 88,295   "truncated": false,296   "block": 6,297   "row": 35955298  },299  {300   "path": "ipfx/bin/generate_se_input.py",301   "sha256": "38667db38aa2e40aa8049642b782a5240c6b82c1c33c090a2d2350109d4c58bc",302   "language": "Python",303   "lines": 54,304   "truncated": false,305   "block": 6,306   "row": 27110307  },308  {309   "path": "ipfx/bin/get_fx_output.py",310   "sha256": "30c050688691f2f5fa47c4ac13944201a43901d17727c40b67489db55572422e",311   "language": "Python",312   "lines": 76,313   "truncated": false,314   "block": 6,315   "row": 32031316  },317  {318   "path": "ipfx/bin/make_stimulus_ontology.py",319   "sha256": "3a45454589119628a3a3a76d5b33ea538d36708723fc0ad90ac22a41d246743e",320   "language": "Python",321   "lines": 88,322   "truncated": false,323   "block": 6,324   "row": 32684325  },326  {327   "path": "ipfx/bin/mcc_get_settings.py",328   "sha256": "f3cfd408d0b93ef92d201fcdb96f0dbb3377e291584a8a45f1e73be920a878db",329   "language": "Python",330   "lines": 1136,331   "truncated": false,332   "block": 7,333   "row": 11623334  },335  {336   "path": "ipfx/bin/nwb_to_pdf.py",337   "sha256": "8183d5b3d3e8c3b7a17320f21f59816ff4ede2d9662af06b3552fe9ef4f13dbd",338   "language": "Python",339   "lines": 450,340   "truncated": false,341   "block": 7,342   "row": 6577343  },344  {345   "path": "ipfx/bin/pipeline_from_specimen_id.py",346   "sha256": "7ddea96b6cd405e39b245eb557155d7d024dc84980d037b1e0d2fd9bcbb9623a",347   "language": "Python",348   "lines": 56,349   "truncated": false,350   "block": 6,351   "row": 28036352  },353  {354   "path": "ipfx/bin/pipeline_from_specimen_id.sh",355   "sha256": "d8028d10b2a6e036f7823350b9c84aaf7673271169d4e38e63183cd2949d71ad",356   "language": "Shell",357   "lines": 17,358   "truncated": false,359   "block": 8,360   "row": 6947361  },362  {363   "path": "ipfx/bin/plot_ephys_nwb.py",364   "sha256": "fb78ca09bb03a9cc3cce3689beeed14ae78dc54f4183ef8040cef3f1a610ceb5",365   "language": "Python",366   "lines": 152,367   "truncated": false,368   "block": 6,369   "row": 40460370  },371  {372   "path": "ipfx/bin/qsub_run_cells.sh",373   "sha256": "66ef5fa78d6c6bdfc75fe0b3ca14fc21f187e51b20f46f2ba99029aa580457f3",374   "language": "Shell",375   "lines": 15,376   "truncated": false,377   "block": 8,378   "row": 6848379  },380  {381   "path": "ipfx/bin/run_chirp_fv_extraction.py",382   "sha256": "70e11e461021c89501a275274b7cd6b12b4bc16841b9385875e91795b9c7754f",383   "language": "Python",384   "lines": 145,385   "truncated": false,386   "block": 6,387   "row": 42332388  },389  {390   "path": "ipfx/bin/run_feature_collection.py",391   "sha256": "052d48abdb67e002d5bccf5ded36d76f648a7d065205ebfd4746050d673adf2e",392   "language": "Python",393   "lines": 274,394   "truncated": false,395   "block": 7,396   "row": 3308397  },398  {399   "path": "ipfx/bin/run_feature_extraction.py",400   "sha256": "f482193e56fb7dd511e9ce00606492816b0c8e6118c472433a5828a08c3fed18",401   "language": "Python",402   "lines": 110,403   "truncated": false,404   "block": 6,405   "row": 39043406  },407  {408   "path": "ipfx/bin/run_feature_vector_extraction.py",409   "sha256": "26db8746b7ddc56ab45f5811cdf3b10394d85b34209175d1a1ac473d21fb14e9",410   "language": "Python",411   "lines": 339,412   "truncated": false,413   "block": 7,414   "row": 5286415  },416  {417   "path": "ipfx/bin/run_pipeline.py",418   "sha256": "6e974aa9fedbcbd2ff3a08a993afd41dc9a8ecf15a13334baab06a5a03eba55e",419   "language": "Python",420   "lines": 89,421   "truncated": false,422   "block": 6,423   "row": 33060424  },425  {426   "path": "ipfx/bin/run_pipeline_from_nwb_file.py",427   "sha256": "bc76976fa4c2f6f872bb3c7c4bfb57fa66f54fa7f1325535b89f518cbae5b21d",428   "language": "Python",429   "lines": 99,430   "truncated": false,431   "block": 6,432   "row": 37308433  },434  {435   "path": "ipfx/bin/run_qc.py",436   "sha256": "f23141ef99328c0a2bc2784343d9e95daae19a54ca05e4d19848953599e83776",437   "language": "Python",438   "lines": 106,439   "truncated": false,440   "block": 6,441   "row": 35886442  },443  {444   "path": "ipfx/bin/run_specimens_from_file.sh",445   "sha256": "11cc52305ad68ea22cd0533fad3905b4ad155b1e75e3461d96fe8d7abde4cc0e",446   "language": "Shell",447   "lines": 10,448   "truncated": false,449   "block": 8,450   "row": 6512451  },452  {453   "path": "ipfx/bin/run_sweep_extraction.py",454   "sha256": "447d4ae70f5fa975cf34f74c76ec007931d66af7a1e39bfe6b74f7510c9ee1e4",455   "language": "Python",456   "lines": 96,457   "truncated": false,458   "block": 6,459   "row": 34182460  },461  {462   "path": "ipfx/bin/run_synphys_feature_vector_extraction.py",463   "sha256": "e71b8552ce5af304236360ebe59a3430c5089335576134cdceabd9f536a6312c",464   "language": "Python",465   "lines": 182,466   "truncated": false,467   "block": 6,468   "row": 45528469  },470  {471   "path": "ipfx/bin/run_x_to_nwb_conversion.py",472   "sha256": "ac142b84f48d786c35b57c51a3893195e8a2cbdbf82df9748131eca8f983574a",473   "language": "Python",474   "lines": 140,475   "truncated": false,476   "block": 6,477   "row": 43680478  },479  {480   "path": "ipfx/bin/validate_experiment.py",481   "sha256": "0e817c6e2c358330372dca9caf3ce0b33c40e5c03953e535bf6655f9433c5725",482   "language": "Python",483   "lines": 138,484   "truncated": false,485   "block": 6,486   "row": 42835487  },488  {489   "path": "ipfx/chirp.py",490   "sha256": "9bbcff25465bb5ce695465d6ba5f682cdd379cfc10a983ebe6b89972c8206daf",491   "language": "Python",492   "lines": 129,493   "truncated": false,494   "block": 6,495   "row": 37891496  },497  {498   "path": "ipfx/data_access.py",499   "sha256": "5ca6cae209526fabfa771ba693c379a6b142dc1ce44747e77892a58b4e1dc053",500   "language": "Python",501   "lines": 59,502   "truncated": false,503   "block": 6,504   "row": 31591505  },506  {507   "path": "ipfx/data_set_features.py",508   "sha256": "f0f1021a722dc4f5fc260aa8dd437c290faabdda4c0d4a61e969d9b14942e907",509   "language": "Python",510   "lines": 403,511   "truncated": false,512   "block": 7,513   "row": 6282514  },515  {516   "path": "ipfx/data_set_utils.py",517   "sha256": "2628f15c0649a6eefed7567182d79b419761eadc8d9a0dd094e69e818820583a",518   "language": "Python",519   "lines": 10,520   "truncated": false,521   "block": 6,522   "row": 21955523  },524  {525   "path": "ipfx/dataset/create.py",526   "sha256": "3e93170215a6f003490a3e150fc2dfaa9f2969116ee6582c8286f203d3564bb5",527   "language": "Python",528   "lines": 130,529   "truncated": false,530   "block": 6,531   "row": 37497532  },533  {534   "path": "ipfx/dataset/ephys_data_interface.py",535   "sha256": "28c65d736509049f40cb0154e921132d8556409a1bdbc82805b9e6a11cadbbc2",536   "language": "Python",537   "lines": 164,538   "truncated": false,539   "block": 6,540   "row": 38241541  },542  {543   "path": "ipfx/dataset/ephys_data_set.py",544   "sha256": "16686eac46f35f3deeda02d49eeceb834e20d238bfa1cfa64d15ec3b32992655",545   "language": "Python",546   "lines": 436,547   "truncated": false,548   "block": 7,549   "row": 5576550  },551  {552   "path": "ipfx/dataset/ephys_nwb_data.py",553   "sha256": "58340ab69aa7805feb85c08d9c56736b217ad67feb386021be8e43cd29a97ee2",554   "language": "Python",555   "lines": 330,556   "truncated": false,557   "block": 7,558   "row": 3981559  },560  {561   "path": "ipfx/dataset/hbg_nwb_data.py",562   "sha256": "fea8feb5d6a8ddaaca924cd160cb93e43c6340e025b42328ff759eee3d4fa40a",563   "language": "Python",564   "lines": 48,565   "truncated": false,566   "block": 6,567   "row": 30115568  },569  {570   "path": "ipfx/dataset/labnotebook.py",571   "sha256": "81fb0768cb137e175d003bbcddb30f538d74027485fe2cc1a3248ff76990b110",572   "language": "Python",573   "lines": 199,574   "truncated": false,575   "block": 6,576   "row": 45078577  },578  {579   "path": "ipfx/dataset/mies_nwb_data.py",580   "sha256": "b627658f842f41e16eb2751c3c8e6d5cc591a517ab59aa48ddd8525bf5878ae4",581   "language": "Python",582   "lines": 58,583   "truncated": false,584   "block": 6,585   "row": 31723586  },587  {588   "path": "ipfx/deprecated.py",589   "sha256": "e918207e7fa7a2c80647b2694ab7fb1a9d252298f48b2e67ed023cfcf44e2c62",590   "language": "Python",591   "lines": 106,592   "truncated": false,593   "block": 6,594   "row": 37862595  },596  {597   "path": "ipfx/ephys_data_set.py",598   "sha256": "7e092cc37dd748e3f0e49844c66cd7302c78a58f3ff4c09611a71f844472e29c",599   "language": "Python",600   "lines": 10,601   "truncated": false,602   "block": 6,603   "row": 21842604  },605  {606   "path": "ipfx/epochs.py",607   "sha256": "4d9bfd30e2722cc08e54ced501f077ddfc71a67b7c374e0cbcbe81177a8ab05d",608   "language": "Python",609   "lines": 193,610   "truncated": false,611   "block": 6,612   "row": 39200613  },614  {615   "path": "ipfx/error.py",616   "sha256": "a7e92a346267e3df9b585a29aca3543f609910784243711281617e143e6145c7",617   "language": "Python",618   "lines": 5,619   "truncated": false,620   "block": 6,621   "row": 20839622  },623  {624   "path": "ipfx/feature_extractor.py",625   "sha256": "11f5ea99597d71a4e7d10e6e00978f1ef4acb45b43a71e459f648fd51021a0ab",626   "language": "Python",627   "lines": 297,628   "truncated": false,629   "block": 7,630   "row": 5367631  },632  {633   "path": "ipfx/feature_record.py",634   "sha256": "b9a575ee25773dfb7840a0e6ca42b6272fbfe616fde21a42c11337cf6226c48a",635   "language": "Python",636   "lines": 95,637   "truncated": false,638   "block": 6,639   "row": 37541640  },641  {642   "path": "ipfx/feature_vectors.py",643   "sha256": "6675974e16a9a6f92a07e851bdd2d6d739f3d16644ca52e164d7fe3b9f3157cb",644   "language": "Python",645   "lines": 991,646   "truncated": false,647   "block": 7,648   "row": 11419649  },650  {651   "path": "ipfx/json_utilities.py",652   "sha256": "a46a09dd4323ae4b58bed333a6163fc480436054482e44c7d2bf01b8bc8ebf9b",653   "language": "Python",654   "lines": 62,655   "truncated": false,656   "block": 6,657   "row": 30811658  },659  {660   "path": "ipfx/lab_notebook_reader.py",661   "sha256": "4577a17f54c4148d158f40c934b15870d665ce2397a49265cb1492d07afe2c34",662   "language": "Python",663   "lines": 10,664   "truncated": false,665   "block": 6,666   "row": 21951667  },668  {669   "path": "ipfx/lims_queries.py",670   "sha256": "abd92271c4c6703d409309ac9c73cd124d0abc29fc720ef5881b5a50770dcfff",671   "language": "Python",672   "lines": 261,673   "truncated": false,674   "block": 6,675   "row": 44974676  },677  {678   "path": "ipfx/logging_utils.py",679   "sha256": "4a4d83c72f64df7a18fb8b2910e8ca3566e2a4705d71e27c7a0c7e4f1fea91da",680   "language": "Python",681   "lines": 43,682   "truncated": false,683   "block": 6,684   "row": 26107685  },686  {687   "path": "ipfx/nwb_append.py",688   "sha256": "67c46cfab8c7a674b3ad5701ac1142a8d281719c75b139684d687ad1b16f3da4",689   "language": "Python",690   "lines": 76,691   "truncated": false,692   "block": 6,693   "row": 33987694  },695  {696   "path": "ipfx/plot_qc_figures.py",697   "sha256": "1f18cff4bec6f1698cae746e639dcea2f80735289a35259182da2205d1340253",698   "language": "Python",699   "lines": 823,700   "truncated": false,701   "block": 7,702   "row": 10834703  },704  {705   "path": "ipfx/qc_feature_evaluator.py",706   "sha256": "87104bb747db31c413fd6fc0e925c69671d8b13c0dcda6fba7a291268896d8fb",707   "language": "Python",708   "lines": 247,709   "truncated": false,710   "block": 7,711   "row": 1226712  },713  {714   "path": "ipfx/qc_feature_extractor.py",715   "sha256": "177c9a1abf5e662b0cf358e7f516512c168d641527f9080d4b007e557ff06677",716   "language": "Python",717   "lines": 386,718   "truncated": false,719   "block": 7,720   "row": 3562721  },722  {723   "path": "ipfx/qc_features.py",724   "sha256": "376c388279a7709bd3d8425a39eae8a8e04724cc6f45a0d02c500ab758b55c36",725   "language": "Python",726   "lines": 141,727   "truncated": false,728   "block": 6,729   "row": 37141730  },731  {732   "path": "ipfx/script_utils.py",733   "sha256": "cd5fca385912fa3433fa65a1b254a958a99cc895df7219f34216adcfdc2214f7",734   "language": "Python",735   "lines": 305,736   "truncated": false,737   "block": 7,738   "row": 5376739  },740  {741   "path": "ipfx/spike_detector.py",742   "sha256": "f977641108b94c524bdb5f050ccdfc63de97755d5db905acf34e1f85aa205282",743   "language": "Python",744   "lines": 426,745   "truncated": false,746   "block": 7,747   "row": 7290748  },749  {750   "path": "ipfx/spike_features.py",751   "sha256": "3a78f51678d6164fe727639fae57793be9511cd450fb6731f723e73ab8c9370b",752   "language": "Python",753   "lines": 391,754   "truncated": false,755   "block": 7,756   "row": 7134757  },758  {759   "path": "ipfx/spike_train_features.py",760   "sha256": "17751c324e50b2e116db7e4f66cb977c7d0cbe7cb206fa2702355532a45b09c1",761   "language": "Python",762   "lines": 429,763   "truncated": false,764   "block": 7,765   "row": 6365766  },767  {768   "path": "ipfx/stim_features.py",769   "sha256": "d355715fbb93643502cec17b51852b2b020e97cfa79607b21ba239a4c0505f36",770   "language": "Python",771   "lines": 71,772   "truncated": false,773   "block": 6,774   "row": 32000775  },776  {777   "path": "ipfx/stimulus.py",778   "sha256": "9c51b1ff6a4cd54bbdbe1dad90652f3ca0abc76aad96fc9ddd6817e651299ee9",779   "language": "Python",780   "lines": 195,781   "truncated": false,782   "block": 6,783   "row": 43352784  },785  {786   "path": "ipfx/stimulus_protocol_analysis.py",787   "sha256": "9b20e235d5c7f6025eeae0d836fe399671517277c88c64821c591299dd2451d7",788   "language": "Python",789   "lines": 306,790   "truncated": false,791   "block": 7,792   "row": 5269793  },794  {795   "path": "ipfx/string_utils.py",796   "sha256": "4a0d194420a0ec824e7e7189ad534f481cb242e134a30fca07b19d399c4548cf",797   "language": "Python",798   "lines": 20,799   "truncated": false,800   "block": 6,801   "row": 21869802  },803  {804   "path": "ipfx/subthresh_features.py",805   "sha256": "9c053963a00f0195251a5ca821ff6f0aab01acf5d0a5a1b6508db5551c9d425d",806   "language": "Python",807   "lines": 223,808   "truncated": false,809   "block": 7,810   "row": 967811  },812  {813   "path": "ipfx/sweep.py",814   "sha256": "4429694e1591cf54e81581dafe3f58be2b6fba423c9b974eb165da3b3da8df9b",815   "language": "Python",816   "lines": 110,817   "truncated": false,818   "block": 6,819   "row": 36567820  },821  {822   "path": "ipfx/sweep_props.py",823   "sha256": "461f9dc07c146567737aa29653e87427610a8baabd3842139ad2fee52e837142",824   "language": "Python",825   "lines": 121,826   "truncated": false,827   "block": 6,828   "row": 36298829  },830  {831   "path": "ipfx/time_series_utils.py",832   "sha256": "fd1349934c357af74f34e0e78e604f44aecba716da5b1fcce19bdeedd68a0a71",833   "language": "Python",834   "lines": 113,835   "truncated": false,836   "block": 6,837   "row": 35664838  },839  {840   "path": "ipfx/utilities.py",841   "sha256": "544e66ac6cd5a645b40938bca145038ae699130cfa86ad06f55b278195ea3068",842   "language": "Python",843   "lines": 54,844   "truncated": false,845   "block": 6,846   "row": 31035847  },848  {849   "path": "ipfx/x_to_nwb/ABFConverter.py",850   "sha256": "562d29e0a89c4d0c561b5fc3d03d5072a8e704178f8ad740637cc1961f96db1f",851   "language": "Python",852   "lines": 620,853   "truncated": false,854   "block": 7,855   "row": 10001856  },857  {858   "path": "ipfx/x_to_nwb/DatConverter.py",859   "sha256": "16098e1af214d4c41e7df3f261ca3240ddc8d58b1b0d060338770626286139a1",860   "language": "Python",861   "lines": 671,862   "truncated": false,863   "block": 7,864   "row": 9950865  },866  {867   "path": "ipfx/x_to_nwb/__init__.py",868   "sha256": "7757923babc987f4a015bcc0805f7f455aa6e30dd32a50beb5f51cf547f09b08",869   "language": "Python",870   "lines": 5,871   "truncated": false,872   "block": 6,873   "row": 20845874  },875  {876   "path": "ipfx/x_to_nwb/conversion_utils.py",877   "sha256": "413dfd883e244259ae31f2c097b152d904c9d8a690c23f0128ec3bc72997af44",878   "language": "Python",879   "lines": 197,880   "truncated": false,881   "block": 6,882   "row": 42018883  },884  {885   "path": "ipfx/x_to_nwb/hr_bundle.py",886   "sha256": "c64505e102016f6ceeb2839a4738cda757d2dcec6cc903a7d1c1099843436aa8",887   "language": "Python",888   "lines": 226,889   "truncated": false,890   "block": 6,891   "row": 43474892  },893  {894   "path": "ipfx/x_to_nwb/hr_nodes.py",895   "sha256": "273b87851bf3f7cf02d61d1291ae982f8773f0b58b0696c9018e2e8acb0b7a3d",896   "language": "Python",897   "lines": 1164,898   "truncated": false,899   "block": 8,900   "row": 178901  },902  {903   "path": "ipfx/x_to_nwb/hr_segments.py",904   "sha256": "8941f0643692675cc02a5ca47b4ade7ff8a68f1ae9168f16f80b04bc3a2b2b55",905   "language": "Python",906   "lines": 324,907   "truncated": false,908   "block": 7,909   "row": 4055910  },911  {912   "path": "ipfx/x_to_nwb/hr_stimsetgenerator.py",913   "sha256": "2531ed4d34b1935eb58c6384a794cfbdefc1b7e59954799212e5ff207ae36825",914   "language": "Python",915   "lines": 80,916   "truncated": false,917   "block": 6,918   "row": 33059919  },920  {921   "path": "ipfx/x_to_nwb/hr_struct.py",922   "sha256": "8b2c90a262ab3576ba556269792646f493fb8f61b80c4bfaedf01df910ee13e7",923   "language": "Python",924   "lines": 190,925   "truncated": false,926   "block": 6,927   "row": 43634928  },929  {930   "path": "ipfx/x_to_nwb/hr_treenode.py",931   "sha256": "c01517868e64bc71f5d4451d1ab6edc98d0cac92530cb86b2ab6c1213f6b9b60",932   "language": "Python",933   "lines": 68,934   "truncated": false,935   "block": 6,936   "row": 32726937  },938  {939   "path": "tests/__init__.py",940   "sha256": "afb6256e5358eb91df6251697c745a565df551b97b48888da17bed2ae0aae603",941   "language": "Python",942   "lines": 10,943   "truncated": false,944   "block": 6,945   "row": 21215946  },947  {948   "path": "tests/attach_metadata/test_cli.py",949   "sha256": "93ea7dbb00784bdadc357c6b8f31af80e213ce9c684bcb83f7371c297e8d6be4",950   "language": "Python",951   "lines": 245,952   "truncated": false,953   "block": 6,954   "row": 44727955  },956  {957   "path": "tests/attach_metadata/test_dandi_yaml_sink.py",958   "sha256": "628196b313cfcae292a9b18d1c8258a2a3aa6216d618417cef70872cc2e7ccb9",959   "language": "Python",960   "lines": 38,961   "truncated": false,962   "block": 6,963   "row": 24588964  },965  {966   "path": "tests/attach_metadata/test_main.py",967   "sha256": "8d318e2c437fb59a2baf30f5dfb94ca5ba12ef509b444272dd44fe46e49ac2c0",968   "language": "Python",969   "lines": 84,970   "truncated": false,971   "block": 6,972   "row": 31559973  },974  {975   "path": "tests/attach_metadata/test_metadata_sink.py",976   "sha256": "c50d683c198b5ab518e2b6387dc30ac48d6483e9f699e28ac7dc0204fd236d56",977   "language": "Python",978   "lines": 67,979   "truncated": false,980   "block": 6,981   "row": 30133982  },983  {984   "path": "tests/attach_metadata/test_nwb2_sink.py",985   "sha256": "00dbad825451ebc93d956e768b51dcdfdfcda9c70df937da01917ed93f77efc0",986   "language": "Python",987   "lines": 160,988   "truncated": false,989   "block": 6,990   "row": 41263991  },992  {993   "path": "tests/conftest.py",994   "sha256": "5a93b2acfd1940ea23ee03566a725f7140233d312c6d40469c748d6b026f67ad",995   "language": "Python",996   "lines": 130,997   "truncated": false,998   "block": 6,999   "row": 375131000  },1001  {1002   "path": "tests/dataset/test_ephys_data_set.py",1003   "sha256": "018a878a11c6fec0cc3155b3547d620d098dd76079e3fbbbd16d89b96ae62113",1004   "language": "Python",1005   "lines": 203,1006   "truncated": false,1007   "block": 6,1008   "row": 433001009  },1010  {1011   "path": "tests/dataset/test_ephys_nwb_data.py",1012   "sha256": "824481a98a7d17ead0d71421d5a5041b47eb0e8b4034b4bd7e7149b392056e96",1013   "language": "Python",1014   "lines": 158,1015   "truncated": false,1016   "block": 6,1017   "row": 405881018  },1019  {1020   "path": "tests/dataset/test_hbg_nwb_data.py",1021   "sha256": "3acd3039ebaf1efbd103a0c67e0c90215e6bd73da6cf6f7de5cf1a3523e95a2c",1022   "language": "Python",1023   "lines": 60,1024   "truncated": false,1025   "block": 6,1026   "row": 310971027  },1028  {1029   "path": "tests/dataset/test_mies_nwb_data.py",1030   "sha256": "8e99ac62aa0cb161b77024cb1e6706a52e96c5ded102993e50709acc21906761",1031   "language": "Python",1032   "lines": 68,1033   "truncated": false,1034   "block": 6,1035   "row": 318801036  },1037  {1038   "path": "tests/helpers_for_tests.py",1039   "sha256": "c8562b533e130a589ed438870ff9522b3e32dbea1b0af5777b4da9f72a0fe1d5",1040   "language": "Python",1041   "lines": 122,1042   "truncated": false,1043   "block": 6,1044   "row": 371361045  },1046  {1047   "path": "tests/test_append_nwb.py",1048   "sha256": "7141e257684cf612bf5232144e3e859d0f465bed360d0d9c6bd662e573a2a2c0",1049   "language": "Python",1050   "lines": 55,1051   "truncated": false,1052   "block": 6,1053   "row": 298431054  },1055  {1056   "path": "tests/test_chirp.py",1057   "sha256": "e1ca6064721e35b87e00823dabc1ea10fe44b3865d5513296bc8cfbdf9fcf8e0",1058   "language": "Python",1059   "lines": 104,1060   "truncated": false,1061   "block": 6,1062   "row": 368481063  },1064  {1065   "path": "tests/test_data_set_features.py",1066   "sha256": "8ec3128f31e1182889585964c0995407cae36fdbe215bc8f3fb0873ac454f848",1067   "language": "Python",1068   "lines": 43,1069   "truncated": false,1070   "block": 6,1071   "row": 271551072  },1073  {1074   "path": "tests/test_ephys_extractor.py",1075   "sha256": "fce82fbca4935120419638f826052aa9a36b4b7297d78a8f27287bce7cfc466f",1076   "language": "Python",1077   "lines": 129,1078   "truncated": false,1079   "block": 6,1080   "row": 392801081  },1082  {1083   "path": "tests/test_epochs.py",1084   "sha256": "1bf2670d0a732030cbe23748c924a319251a0dc96486702adc92e79c7c8c02b5",1085   "language": "Python",1086   "lines": 157,1087   "truncated": false,1088   "block": 6,1089   "row": 427451090  },1091  {1092   "path": "tests/test_feature_record.py",1093   "sha256": "d3b5ebff6f124fd027a159a2190d62727b67d2c961043ac9947089a11e9ff090",1094   "language": "Python",1095   "lines": 27,1096   "truncated": false,1097   "block": 6,1098   "row": 236661099  },1100  {1101   "path": "tests/test_feature_vector.py",1102   "sha256": "0471fad9a4f875b90d8d662e36443b144ec40abc053aa31e5cd54e658be9319e",1103   "language": "Python",1104   "lines": 1257,1105   "truncated": false,1106   "block": 7,1107   "row": 112381108  },1109  {1110   "path": "tests/test_lims_queries.py",1111   "sha256": "c311e333f1dff661b23048c38631f2111d30ebb59f242540408a29ef31106e5e",1112   "language": "Python",1113   "lines": 27,1114   "truncated": false,1115   "block": 6,1116   "row": 249441117  },1118  {1119   "path": "tests/test_mies_nwb_pipeline_output.py",1120   "sha256": "7e29d933211e76ee5090d20d43514ad8bfa4981cf7f9ea3ecce0c6c0707f9835",1121   "language": "Python",1122   "lines": 95,1123   "truncated": false,1124   "block": 6,1125   "row": 360051126  },1127  {1128   "path": "tests/test_nwb_utils.py",1129   "sha256": "bf7189141ef52c6347ba90538d38213193e7114ee3d1c1f51fea873c48ea4674",1130   "language": "Python",1131   "lines": 17,1132   "truncated": false,1133   "block": 6,1134   "row": 237971135  },1136  {1137   "path": "tests/test_ontology.py",1138   "sha256": "c23cf10b6cc1f0256417e8458fcd0c958f8a7ea391e5330981a7605cd2d786fc",1139   "language": "Python",1140   "lines": 32,1141   "truncated": false,1142   "block": 6,1143   "row": 250411144  },1145  {1146   "path": "tests/test_qc_features.py",1147   "sha256": "427a56df0629e278c55077be194a3274db18b5d6ff97bcb4a1fc4896a5ce85b2",1148   "language": "Python",1149   "lines": 76,1150   "truncated": false,1151   "block": 6,1152   "row": 314691153  },1154  {1155   "path": "tests/test_run_feature_vector.py",1156   "sha256": "22abf9eee5cc2707a949ec05a2a8219f6c5ee78aa8cf1014296a72e953af00ec",1157   "language": "Python",1158   "lines": 88,1159   "truncated": false,1160   "block": 6,1161   "row": 377841162  },1163  {1164   "path": "tests/test_spike_detector.py",1165   "sha256": "36a0bd7064e6caa939e19046980c653723ae43a3326ea504a9c3e9eca8b4b678",1166   "language": "Python",1167   "lines": 205,1168   "truncated": false,1169   "block": 6,1170   "row": 430711171  },1172  {1173   "path": "tests/test_spike_features.py",1174   "sha256": "82d5cde8a0abf551462fdea74419eb4093fd581d0026cc81b0be8a48b7793ddd",1175   "language": "Python",1176   "lines": 66,1177   "truncated": false,1178   "block": 6,1179   "row": 348541180  },1181  {1182   "path": "tests/test_stim_features.py",1183   "sha256": "a54f1883730a25866eddf02b77de965e48f4cee56f84810b8d2cc04a5edd6b06",1184   "language": "Python",1185   "lines": 92,1186   "truncated": false,1187   "block": 6,1188   "row": 337211189  },1190  {1191   "path": "tests/test_stimulus_protocol_analysis.py",1192   "sha256": "e7f0f125a4ae01f2281665671337d4e826fdc1169f5303d930f7adee14dff9f1",1193   "language": "Python",1194   "lines": 38,1195   "truncated": false,1196   "block": 6,1197   "row": 283921198  },1199  {1200   "path": "tests/test_string_utils.py",

Showing the first 1,200 of 1263 lines. Download the file for the rest.