Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__garyptchoi__ferret-brain-morphogenesis.json300 linesDownload Raw Back to 35
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/garyptchoi/ferret-brain-morphogenesis",4 "url": "https://github.com/garyptchoi/ferret-brain-morphogenesis",5 "host": "github.com",6 "commit": "e0fcf16ecc15bda934e3fe412811b493f93028da",7 "license": "Apache-2.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4",14   "language": "License",15   "lines": 201,16   "truncated": false,17   "block": 1,18   "row": 221619  },20  {21   "path": "README.md",22   "sha256": "509dfe7b0c3603280e1fdebc453b035b52e7c5e7b8ebf77b49defdb2890fa3d5",23   "language": "Text",24   "lines": 42,25   "truncated": false,26   "block": 16,27   "row": 710928  },29  {30   "path": "code_morphometrics/FLASH/angle_distortion.m",31   "sha256": "1a982e63fd70214c7a30c70a7a6def4708c0a1a3e412cd688d3c6fd09e54ae30",32   "language": "MATLAB",33   "lines": 80,34   "truncated": false,35   "block": 14,36   "row": 2463537  },38  {39   "path": "code_morphometrics/FLASH/beltrami_coefficient.m",40   "sha256": "b0d6e104616e9ee9fbf922246cc0446b09c44671697fdf92c3890d41042b0e4e",41   "language": "MATLAB",42   "lines": 47,43   "truncated": false,44   "block": 14,45   "row": 2151746  },47  {48   "path": "code_morphometrics/FLASH/cotangent_laplacian.m",49   "sha256": "6f5f47deac95d3e46fbf9dfb93a3b6b9930a487c0f063ffc430e94d216165eae",50   "language": "MATLAB",51   "lines": 34,52   "truncated": false,53   "block": 14,54   "row": 2053455  },56  {57   "path": "code_morphometrics/FLASH/createOperator.m",58   "sha256": "b583b0015c81bf77ba168faee3ec16042456eca6be27f6737fafe380975c89ba",59   "language": "MATLAB",60   "lines": 52,61   "truncated": false,62   "block": 14,63   "row": 2199764  },65  {66   "path": "code_morphometrics/FLASH/flash.m",67   "sha256": "a06b70789178c23fe959493c8eb8cd7c8158af2bff0f11b5797e35dfd43be462",68   "language": "MATLAB",69   "lines": 269,70   "truncated": false,71   "block": 15,72   "row": 342873  },74  {75   "path": "code_morphometrics/FLASH/landmark_modify.m",76   "sha256": "26e1e462e143293b5a2edf2745657f80d5e0ec88e159b3ddf63dfe1301dff4d3",77   "language": "MATLAB",78   "lines": 35,79   "truncated": false,80   "block": 14,81   "row": 1989582  },83  {84   "path": "code_morphometrics/FLASH/linear_beltrami_solver.m",85   "sha256": "07b78d48e5ab23ddde94dc796a26787c7347901df51828c5801828f269b0aacd",86   "language": "MATLAB",87   "lines": 50,88   "truncated": false,89   "block": 14,90   "row": 2247191  },92  {93   "path": "code_morphometrics/FLASH/mobius_transformation.m",94   "sha256": "f415e49a8b199e63d626013bda561297e943f7638a6c02d3fc0e572e04760af9",95   "language": "MATLAB",96   "lines": 44,97   "truncated": false,98   "block": 14,99   "row": 20957100  },101  {102   "path": "code_morphometrics/FLASH/mobius_transformation_ls.m",103   "sha256": "34ece82712f81576924c83d6ad4035265eb6000a1bbe77ff2947b490a699f4c9",104   "language": "MATLAB",105   "lines": 46,106   "truncated": false,107   "block": 14,108   "row": 21701109  },110  {111   "path": "code_morphometrics/FLASH/plot_mesh.m",112   "sha256": "a0d42dc9d637509231f193aab0b118f97ab3dfd579f92d59858b470c0afee584",113   "language": "MATLAB",114   "lines": 30,115   "truncated": false,116   "block": 14,117   "row": 19978118  },119  {120   "path": "code_morphometrics/FLASH/plot_mesh_lm.m",121   "sha256": "e357aa8545725504afc49e9f546476d68be7231fe722c4b5956f3b373347e2a4",122   "language": "MATLAB",123   "lines": 44,124   "truncated": false,125   "block": 14,126   "row": 21010127  },128  {129   "path": "code_morphometrics/FLASH/process_lm.m",130   "sha256": "db958638ca4fa276d939ae888c0f47e3dd8b298da6b8789c6d334adf3254383d",131   "language": "MATLAB",132   "lines": 20,133   "truncated": false,134   "block": 14,135   "row": 19099136  },137  {138   "path": "code_morphometrics/FLASH/smoothing.m",139   "sha256": "4d1d48c2619600e74cc98482fb546baad9c74805340f6a6cfd39d0e302e7b4c6",140   "language": "MATLAB",141   "lines": 17,142   "truncated": false,143   "block": 14,144   "row": 19033145  },146  {147   "path": "code_morphometrics/FLASH/spherical_conformal_map.m",148   "sha256": "5f8462daeeaabf3976802ea149c6884ed8bdd3a2f29f544a68b4b9ef12b0cb88",149   "language": "MATLAB",150   "lines": 142,151   "truncated": false,152   "block": 15,153   "row": 1414154  },155  {156   "path": "code_morphometrics/FLASH/spherical_tutte_map.m",157   "sha256": "c27eb7b8ea5ece5d877720c0b60e1474c3585402ec605b948651343c7587ca59",158   "language": "MATLAB",159   "lines": 66,160   "truncated": false,161   "block": 14,162   "row": 23389163  },164  {165   "path": "code_morphometrics/FLASH/threshold.m",166   "sha256": "d33c3b8dd82c6116e44f0c1531b9716a237a49ad627c18ee69233b5001530b64",167   "language": "MATLAB",168   "lines": 5,169   "truncated": false,170   "block": 14,171   "row": 17627172  },173  {174   "path": "code_morphometrics/Y_sph.m",175   "sha256": "a1582a2e40b8418568e4f950fa0d2f122b84a73eb5a01590090cc454eef9af68",176   "language": "MATLAB",177   "lines": 23,178   "truncated": false,179   "block": 14,180   "row": 19194181  },182  {183   "path": "code_morphometrics/hole_filling.m",184   "sha256": "f2359044bbf59081cc9a9bf679b1ee361385c59dab7d0cdfd6ca637149bddadb",185   "language": "MATLAB",186   "lines": 31,187   "truncated": false,188   "block": 14,189   "row": 19519190  },191  {192   "path": "code_morphometrics/meshboundaries.m",193   "sha256": "f55cfc43e3882a1d18c4acd6e533e8ab6d62e56d55a83caabec71e80902cce58",194   "language": "MATLAB",195   "lines": 63,196   "truncated": false,197   "block": 14,198   "row": 21449199  },200  {201   "path": "code_morphometrics/mobius_area_correction_spherical.m",202   "sha256": "2d6363678213386fbfb27aaf0659ecf53b45b3f1fe331ed4640d4f40848dc74e",203   "language": "MATLAB",204   "lines": 92,205   "truncated": false,206   "block": 15,207   "row": 1208  },209  {210   "path": "code_morphometrics/read_off.m",211   "sha256": "c229caec983bc96be980ec2b97261e2d812ec644f7e41a6ed3922e76c402d026",212   "language": "MATLAB",213   "lines": 14,214   "truncated": false,215   "block": 14,216   "row": 18250217  },218  {219   "path": "code_morphometrics/tricurv.m",220   "sha256": "b53b2e1a5fd26fef4ad6a2775243864cb9bde3711184b107312b890abd191c2f",221   "language": "MATLAB",222   "lines": 199,223   "truncated": false,224   "block": 15,225   "row": 2120226  },227  {228   "path": "code_simulation/Brains_simulation.cpp",229   "sha256": "fb97a9771a1e9abf7c38161c557ab531611f66714f96e5a64be14144324b030d",230   "language": "C++",231   "lines": 585,232   "truncated": false,233   "block": 14,234   "row": 3146235  },236  {237   "path": "code_simulation/Brains_simulation_modified_growth_rate.cpp",238   "sha256": "471d39541bfc68c5cdf9d21de61f06c25a38e05ea785eb20fb3a18e7debc34ae",239   "language": "C++",240   "lines": 585,241   "truncated": false,242   "block": 14,243   "row": 3149244  },245  {246   "path": "code_simulation/Brains_simulation_modified_local.cpp",247   "sha256": "4daf5e552737204d2cff18f2c5654029c2c3cabda7037d9ca9950f9bebc9346b",248   "language": "C++",249   "lines": 607,250   "truncated": false,251   "block": 14,252   "row": 3178253  },254  {255   "path": "code_simulation/Brains_simulation_modified_thickness.cpp",256   "sha256": "cb88d668c1017c7b594bdc61551e2ce2a38c01217fb7beb3ba77812b59cbca35",257   "language": "C++",258   "lines": 585,259   "truncated": false,260   "block": 14,261   "row": 3151262  },263  {264   "path": "code_simulation/eig3.cpp",265   "sha256": "f077c3bc3fdc5122e9045aa50494ee869b65f823567e838ed8d88028549a824b",266   "language": "C++",267   "lines": 265,268   "truncated": false,269   "block": 14,270   "row": 2364271  },272  {273   "path": "code_simulation/eig3.h",274   "sha256": "37efbfef0b71aeb617960aff7a2ace00190fd86a0fd3033138b01870f2c72211",275   "language": "C/C++",276   "lines": 11,277   "truncated": false,278   "block": 14,279   "row": 3635280  },281  {282   "path": "code_simulation/vema.h",283   "sha256": "cc6133dc7923c9d5b12cca66c763c022dd08a36112f0c3f303c7939673ea74a4",284   "language": "C/C++",285   "lines": 172,286   "truncated": false,287   "block": 14,288   "row": 5040289  },290  {291   "path": "demo_morphometrics.m",292   "sha256": "875bba58c1ba7f326b7e3fdebf1829519747cb937cc902f86d4b9b31f2fcfbbd",293   "language": "MATLAB",294   "lines": 97,295   "truncated": false,296   "block": 14,297   "row": 24660298  }299 ]300}