Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__noamteyssier__crispr_screen.json354 linesDownload Raw Back to 36
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/noamteyssier/crispr_screen",4 "url": "https://github.com/noamteyssier/crispr_screen",5 "host": "github.com",6 "commit": "82e282c725dc3883df13e9618b1b00a739815f4b",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE.md",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE.md",13   "sha256": "81c17a78bd43f9df592d00dcac53218c936bbcd44a2b130a6108193e93eeb5fe",14   "language": "License",15   "lines": 7,16   "truncated": false,17   "block": 1,18   "row": 207419  },20  {21   "path": "README.md",22   "sha256": "d3a82fa5cdc2f6b729fe5f2000cf592c55eaae7e9399baecaa78de0a246491f8",23   "language": "Text",24   "lines": 112,25   "truncated": false,26   "block": 1,27   "row": 1188528  },29  {30   "path": "doc/theme/book.js",31   "sha256": "51c8bb0d83fb098b48f050fb3fe35db8c6a76b9422bba26987e2b7368cd8c828",32   "language": "JavaScript",33   "lines": 679,34   "truncated": false,35   "block": 1,36   "row": 150537  },38  {39   "path": "doc/theme/highlight.js",40   "sha256": "5a2b5dadd60831dd1f82220223e2ab18e627061912cc89b5c450ab2c8f26ff90",41   "language": "JavaScript",42   "lines": 6,43   "truncated": false,44   "block": 1,45   "row": 154846  },47  {48   "path": "src/aggregation/compute_aggregation.rs",49   "sha256": "0c49075e6bb82bed03ad1800d2df6e7bdd4985751b8c98adfa95168c71132ab6",50   "language": "Rust",51   "lines": 381,52   "truncated": false,53   "block": 1,54   "row": 1097555  },56  {57   "path": "src/aggregation/mod.rs",58   "sha256": "7e5f8e3ef93a482eadbd984064ff3fa47ec5c5d5b3d19ed48c80db824384b587",59   "language": "Rust",60   "lines": 138,61   "truncated": false,62   "block": 1,63   "row": 1078464  },65  {66   "path": "src/aggregation/results.rs",67   "sha256": "53f33b23384dfcff93da88044cdd8b09c21e33f3a866233cabd38fca92695c87",68   "language": "Rust",69   "lines": 184,70   "truncated": false,71   "block": 1,72   "row": 1085873  },74  {75   "path": "src/aggregation/utils.rs",76   "sha256": "f8bfe448732a1efa0b0ccf0096d3a7c20a7ba3af738d4e188519bf9072d975f4",77   "language": "Rust",78   "lines": 217,79   "truncated": false,80   "block": 1,81   "row": 1091382  },83  {84   "path": "src/cli.rs",85   "sha256": "8afa56fa01e3923505348c8fb8cdc2feed0595b0d8d86944a68b102defb5da22",86   "language": "Rust",87   "lines": 308,88   "truncated": false,89   "block": 1,90   "row": 1093591  },92  {93   "path": "src/differential_expression.rs",94   "sha256": "21e8104a850480f5ae81e92b4f025aca791fec372f7f93b59002d673b3735e6f",95   "language": "Rust",96   "lines": 102,97   "truncated": false,98   "block": 1,99   "row": 10777100  },101  {102   "path": "src/enrich/enrichment_testing.rs",103   "sha256": "7e1bf162fa04275d36fbfd184841b255543bd88d57881477551a3f800532b9ce",104   "language": "Rust",105   "lines": 342,106   "truncated": false,107   "block": 1,108   "row": 10976109  },110  {111   "path": "src/enrich/mod.rs",112   "sha256": "956888e7550d6d90263426cd3b0b2560dcc7fb5546a099a048cbaa82ae5f0854",113   "language": "Rust",114   "lines": 22,115   "truncated": false,116   "block": 1,117   "row": 10669118  },119  {120   "path": "src/enrich/results.rs",121   "sha256": "a0ab47f6106eca76801ba434fe9cc49556da10fb14f586d25c2ae1489bc6e754",122   "language": "Rust",123   "lines": 183,124   "truncated": false,125   "block": 1,126   "row": 10869127  },128  {129   "path": "src/io/gene_frame.rs",130   "sha256": "4b81061aec24a3edbe95779a901ac360cacd5da7f220127988e1eb351dc23d35",131   "language": "Rust",132   "lines": 113,133   "truncated": false,134   "block": 1,135   "row": 10795136  },137  {138   "path": "src/io/mod.rs",139   "sha256": "8aba72216a9c6217be1f4f601af5b9a549ccac9be8c36eae5057e2fc2b6b6534",140   "language": "Rust",141   "lines": 12,142   "truncated": false,143   "block": 1,144   "row": 10646145  },146  {147   "path": "src/io/screenviz.rs",148   "sha256": "f0ab63aa22ede3728cedf1cb8b6ec67940baab556a012f2223f4973b94a4d7f2",149   "language": "Rust",150   "lines": 350,151   "truncated": false,152   "block": 1,153   "row": 10981154  },155  {156   "path": "src/io/sgrna_frame.rs",157   "sha256": "0c5a7c6df039b0036df3101488ae1f9a46ec6a1160d87b8928be070a134a2b5a",158   "language": "Rust",159   "lines": 45,160   "truncated": false,161   "block": 1,162   "row": 10702163  },164  {165   "path": "src/io/utils.rs",166   "sha256": "64131b5ef705eebd219673e3e7409cfec126b7e13037688a5d438d131ebdbb96",167   "language": "Rust",168   "lines": 201,169   "truncated": false,170   "block": 1,171   "row": 10875172  },173  {174   "path": "src/main.rs",175   "sha256": "f05587d203b1fae9ab4da1f74bdf2df5621b1e29f2c66c44edae33ef5411ea49",176   "language": "Rust",177   "lines": 304,178   "truncated": false,179   "block": 1,180   "row": 10932181  },182  {183   "path": "src/model/logged_ols.rs",184   "sha256": "20d55e77122e88b8a12cc5afd8b304ec9f97e42ba410b9206d3636d9b2829ced",185   "language": "Rust",186   "lines": 199,187   "truncated": false,188   "block": 1,189   "row": 10878190  },191  {192   "path": "src/model/math.rs",193   "sha256": "aad832c21248350c8b59f9eadb10c23915e27bd4787afddad8b80ea45f243a22",194   "language": "Rust",195   "lines": 44,196   "truncated": false,197   "block": 1,198   "row": 10676199  },200  {201   "path": "src/model/mod.rs",202   "sha256": "817a8c15a71202299e4f469fa4307b4311d5495a98fc32775d8d2d13b053e444",203   "language": "Rust",204   "lines": 28,205   "truncated": false,206   "block": 1,207   "row": 10653208  },209  {210   "path": "src/model/model_mean_variance.rs",211   "sha256": "22aa54626a9254e69d8c1bc1cc56aee484bed3a0555c8cd60f7b54a83c239bba",212   "language": "Rust",213   "lines": 27,214   "truncated": false,215   "block": 1,216   "row": 10672217  },218  {219   "path": "src/model/ols.rs",220   "sha256": "4022456cb8b0e43964a4b853cf092c798e691988f9e95b4818644d9c8f5df7fc",221   "language": "Rust",222   "lines": 106,223   "truncated": false,224   "block": 1,225   "row": 10770226  },227  {228   "path": "src/model/sqmean.rs",229   "sha256": "416b92de219bbcfbfada3ef7ce1557ce8ba94bead51385e90ecae6c531483504",230   "language": "Rust",231   "lines": 28,232   "truncated": false,233   "block": 1,234   "row": 10661235  },236  {237   "path": "src/model/wols.rs",238   "sha256": "844b2bf42ffbd292ce030ed665e17cdb79d6f854b35a7d05a22a5452b6f1820d",239   "language": "Rust",240   "lines": 102,241   "truncated": false,242   "block": 1,243   "row": 10765244  },245  {246   "path": "src/norm/median_ratio_norm.rs",247   "sha256": "c26f9e9871e7f90ce146e58f3314b2a5e82042ecffd953b1cc86f5b246c1e244",248   "language": "Rust",249   "lines": 83,250   "truncated": false,251   "block": 1,252   "row": 10745253  },254  {255   "path": "src/norm/mod.rs",256   "sha256": "e05afa7970c6b52f69ec19d3416a7703c03366014c36af52ec2a435b24dfe59d",257   "language": "Rust",258   "lines": 8,259   "truncated": false,260   "block": 1,261   "row": 10637262  },263  {264   "path": "src/norm/normalize_counts.rs",265   "sha256": "9fd607330acc5e732602cf8e631b0757765d16000c7d3615c2153dc6be71f159",266   "language": "Rust",267   "lines": 34,268   "truncated": false,269   "block": 1,270   "row": 10675271  },272  {273   "path": "src/norm/total_norm.rs",274   "sha256": "b4a7962bd03c35418a959351eca6d2a63fe47334898690149a5b5bab423522d5",275   "language": "Rust",276   "lines": 43,277   "truncated": false,278   "block": 1,279   "row": 10697280  },281  {282   "path": "src/resample.rs",283   "sha256": "6532c13d2f0160e06ba0029df7396136493a41097641d16a18c6dc8a027893f4",284   "language": "Rust",285   "lines": 136,286   "truncated": false,287   "block": 1,288   "row": 10825289  },290  {291   "path": "src/run_aggregation.rs",292   "sha256": "89ef8dd0a632fbb164bff705f22c2050ca884d7ea9e5c64a5c231ffffc9d01b6",293   "language": "Rust",294   "lines": 64,295   "truncated": false,296   "block": 1,297   "row": 10709298  },299  {300   "path": "src/utils/agg.rs",301   "sha256": "496ad8ccae7c092b5b96eed3246c8b7192332e5768befdf6618af914dd5187b6",302   "language": "Rust",303   "lines": 82,304   "truncated": false,305   "block": 1,306   "row": 10737307  },308  {309   "path": "src/utils/config.rs",310   "sha256": "8384442cf89eec665ff8fc9bbc17d220a5a6eb39dd0d6f1256b42f59dc033d34",311   "language": "Rust",312   "lines": 108,313   "truncated": false,314   "block": 1,315   "row": 10767316  },317  {318   "path": "src/utils/filter.rs",319   "sha256": "440d0530a8775dacdd3c2ac039f9fe58887406aeffc59eacf060a46c0ad6edc2",320   "language": "Rust",321   "lines": 134,322   "truncated": false,323   "block": 1,324   "row": 10820325  },326  {327   "path": "src/utils/logging.rs",328   "sha256": "0c2df63b841d1bd0d49b2c986cf6f8c3ddb83d7c54fa23d50dad9f2ea4dc191c",329   "language": "Rust",330   "lines": 364,331   "truncated": false,332   "block": 1,333   "row": 10974334  },335  {336   "path": "src/utils/math.rs",337   "sha256": "d63200f2950e3cf8e148489f38d402f2776acba69dda45f2d9f3b455f15c16b4",338   "language": "Rust",339   "lines": 103,340   "truncated": false,341   "block": 1,342   "row": 10781343  },344  {345   "path": "src/utils/mod.rs",346   "sha256": "784a15102d66049027bcdbdfffc5fc0fb91bb80676f0ebb7369190065621c8eb",347   "language": "Rust",348   "lines": 19,349   "truncated": false,350   "block": 1,351   "row": 10642352  }353 ]354}