OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/saezlab/liana-py",4 "url": "https://github.com/saezlab/liana-py",5 "host": "github.com",6 "commit": "08590dbd45e90576fb0a8dcb9d1dbb139900bb34",7 "license": "BSD-3-Clause",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "1cbafe60cd1e28a9f8a039a139bacc6c99dd5cd1132425e96baf41217737f666",14 "language": "License",15 "lines": 29,16 "truncated": false,17 "block": 14,18 "row": 1717519 },20 {21 "path": "README.md",22 "sha256": "b486b892ff161bb7137cc3fe06b4ae4091f7d85696e881b3f3ece765b5a58616",23 "language": "Text",24 "lines": 152,25 "truncated": false,26 "block": 16,27 "row": 759828 },29 {30 "path": "docs/conf.py",31 "sha256": "c149a808275e979253bfc2f319ea866133cce2b47f946c081c551c7f8551b98f",32 "language": "Python",33 "lines": 202,34 "truncated": false,35 "block": 15,36 "row": 1966937 },38 {39 "path": "docs/extensions/alias_typehints.py",40 "sha256": "f74aacd4861b9afc0e503c698a950648ccf3a65a9442f5f3a1a28ebe5a3d134e",41 "language": "Python",42 "lines": 51,43 "truncated": false,44 "block": 15,45 "row": 1190646 },47 {48 "path": "docs/extensions/typed_returns.py",49 "sha256": "e02475cc692d772ce9089a1ce23f28d9a73363b101407cdc7225ab5a96d8c31a",50 "language": "Python",51 "lines": 32,52 "truncated": false,53 "block": 15,54 "row": 831255 },56 {57 "path": "src/liana/__init__.py",58 "sha256": "0ff0d8e23b9bf09793c73ba62e537ceb08f53e0221ef260b0778953263d25ba7",59 "language": "Python",60 "lines": 20,61 "truncated": false,62 "block": 15,63 "row": 715164 },65 {66 "path": "src/liana/_core/_common.py",67 "sha256": "c92a19168a38dcd43e21ad43c7b17e939aeee5f34bb1ca1b0783281854ef7bf9",68 "language": "Python",69 "lines": 94,70 "truncated": false,71 "block": 15,72 "row": 1301873 },74 {75 "path": "src/liana/_core/_constants.py",76 "sha256": "b4783044db97aadc783e48a2c4b2f7d54c7f73374489969628cf25b02518f8bf",77 "language": "Python",78 "lines": 105,79 "truncated": false,80 "block": 15,81 "row": 1412182 },83 {84 "path": "src/liana/_core/_docs.py",85 "sha256": "1e726836a24cc05345a41657b599944c831d83d7abf1fa4932b213aebb495751",86 "language": "Python",87 "lines": 490,88 "truncated": false,89 "block": 15,90 "row": 2388991 },92 {93 "path": "src/liana/_core/_pipe_utils/__init__.py",94 "sha256": "12fd730dc506c20e1d758c52aa2cf7b7a90e1a0ede864fd650757430f8075ebe",95 "language": "Python",96 "lines": 8,97 "truncated": false,98 "block": 15,99 "row": 6020100 },101 {102 "path": "src/liana/_core/_pipe_utils/_aggregate.py",103 "sha256": "849bc50f820d59ecbe7951c0ca6167e9a5faa08186443cd06e8afad230d55d9e",104 "language": "Python",105 "lines": 242,106 "truncated": false,107 "block": 15,108 "row": 20450109 },110 {111 "path": "src/liana/_core/_pipe_utils/_common.py",112 "sha256": "dcf3ac4009fab87b03fb8f6772ff65e6811076e2a8c5dd78fafee8ece92cf5ef",113 "language": "Python",114 "lines": 67,115 "truncated": false,116 "block": 15,117 "row": 10983118 },119 {120 "path": "src/liana/_core/_pipe_utils/_get_mean_perms.py",121 "sha256": "6e167e2ab55558795325eb2257cf7c5adc382bcb878b466e0e7d75b2955ff7c4",122 "language": "Python",123 "lines": 412,124 "truncated": false,125 "block": 15,126 "row": 24090127 },128 {129 "path": "src/liana/_core/_pipe_utils/_pre.py",130 "sha256": "7fc2b5e72443927cf524b52b03be5a7a96583ffd7ba313cfb264f5bf97f02776",131 "language": "Python",132 "lines": 389,133 "truncated": false,134 "block": 15,135 "row": 23830136 },137 {138 "path": "src/liana/_core/_types.py",139 "sha256": "a6495f1d43430c632fbeeeca620fc99551a5222789fb2c4eab850bd091779ff1",140 "language": "Python",141 "lines": 139,142 "truncated": false,143 "block": 15,144 "row": 17883145 },146 {147 "path": "src/liana/_skills/__init__.py",148 "sha256": "c4db9da507bfde561b12dd3ce5b61e814de60cd5773233f834d87d1b22be4425",149 "language": "Python",150 "lines": 5,151 "truncated": false,152 "block": 15,153 "row": 6163154 },155 {156 "path": "src/liana/_skills/install.py",157 "sha256": "099a7f173f0c2c727e0ac7884f62eb331bfa5210c35f241bc6c7ec6b9a040645",158 "language": "Python",159 "lines": 71,160 "truncated": false,161 "block": 15,162 "row": 12943163 },164 {165 "path": "src/liana/datasets/__init__.py",166 "sha256": "f0f102d0cc7ecba20450afc7327974aff39de0cb3324c3b64ef0ba73f99fdd42",167 "language": "Python",168 "lines": 15,169 "truncated": false,170 "block": 15,171 "row": 6645172 },173 {174 "path": "src/liana/datasets/_fetch.py",175 "sha256": "7f9e6e789dfe973d45175a5755444a1b6c47e6abce5d27e5619afafdda04cae2",176 "language": "Python",177 "lines": 44,178 "truncated": false,179 "block": 15,180 "row": 9917181 },182 {183 "path": "src/liana/datasets/_sample_anndata.py",184 "sha256": "28c5a326c5cbb67ce58eb8143ce26db51ea3e7ffd633adefe1c86d421cf171f5",185 "language": "Python",186 "lines": 145,187 "truncated": false,188 "block": 15,189 "row": 16587190 },191 {192 "path": "src/liana/datasets/_sample_dea.py",193 "sha256": "82fbe499c648cbb9efbf65f0b21d440f17b3ac1d14ecb57c3b46a18e85424679",194 "language": "Python",195 "lines": 30,196 "truncated": false,197 "block": 15,198 "row": 7513199 },200 {201 "path": "src/liana/datasets/_sample_lrs.py",202 "sha256": "c1bafdd5b98dcb385041118f94af8045094655612aa99ae7215b6d6e01a37119",203 "language": "Python",204 "lines": 51,205 "truncated": false,206 "block": 15,207 "row": 9791208 },209 {210 "path": "src/liana/datasets/_sample_misty.py",211 "sha256": "4e22dc8f18a55a4e17540fcd1fc13c2469c1c582eea09cf5549feff831d87864",212 "language": "Python",213 "lines": 28,214 "truncated": false,215 "block": 15,216 "row": 8320217 },218 {219 "path": "src/liana/datasets/_sample_resource.py",220 "sha256": "b0f2122e2a0481adb71b94f8de67d4693e66a988a3333932cde5db59d786c73e",221 "language": "Python",222 "lines": 16,223 "truncated": false,224 "block": 15,225 "row": 6954226 },227 {228 "path": "src/liana/datasets/datasets.py",229 "sha256": "273509342007de4b35d36b93876d7b422cce455476d1a37f23a92a6f8de3e48d",230 "language": "Python",231 "lines": 160,232 "truncated": false,233 "block": 15,234 "row": 18885235 },236 {237 "path": "src/liana/method/__init__.py",238 "sha256": "4184e26df1e576bc5112d51a6009d7e6f1998d00e5d2e6cef09dd4d658cb0e95",239 "language": "Python",240 "lines": 166,241 "truncated": false,242 "block": 15,243 "row": 16376244 },245 {246 "path": "src/liana/method/df_to_lr.py",247 "sha256": "f8aec4f3bd8d3d44af640e73d6d0664a2d86b4f52d09c0dab0843df4ef708e1b",248 "language": "Python",249 "lines": 228,250 "truncated": false,251 "block": 15,252 "row": 20869253 },254 {255 "path": "src/liana/method/fun/__init__.py",256 "sha256": "521dd8d9f8d91f00655a8d38ecb1e9980462aa27c115f25470e7888ba8793540",257 "language": "Python",258 "lines": 2,259 "truncated": false,260 "block": 15,261 "row": 5751262 },263 {264 "path": "src/liana/method/fun/_causalnet.py",265 "sha256": "baff99f5e7ba0ce033bce4b1943e624a814e34b46ef290a3a5603dac3073f91c",266 "language": "Python",267 "lines": 232,268 "truncated": false,269 "block": 15,270 "row": 21440271 },272 {273 "path": "src/liana/method/fun/_estimate_metalinks.py",274 "sha256": "d0254575c9eb943f4c12f251e34828217ead86fe36e71607c4978ac5917b5055",275 "language": "Python",276 "lines": 119,277 "truncated": false,278 "block": 15,279 "row": 15693280 },281 {282 "path": "src/liana/method/sc/_Method.py",283 "sha256": "0a88f75c334667a9efe5fd44c19fd48d76231e89513c3843510847d6a5651c1f",284 "language": "Python",285 "lines": 351,286 "truncated": false,287 "block": 15,288 "row": 22546289 },290 {291 "path": "src/liana/method/sc/__init__.py",292 "sha256": "7b9b1a51270c0e252be312efa52f527bd60c46a9c438e143170c4650969a3487",293 "language": "Python",294 "lines": 19,295 "truncated": false,296 "block": 15,297 "row": 6708298 },299 {300 "path": "src/liana/method/sc/_cellchat.py",301 "sha256": "59fdd473f161fbc693eee29b5147e17262d22318847f9c283529d538393c32aa",302 "language": "Python",303 "lines": 65,304 "truncated": false,305 "block": 15,306 "row": 10931307 },308 {309 "path": "src/liana/method/sc/_cellphonedb.py",310 "sha256": "f2ccbd27ca10347672f9237b2e5c209799cf012254a86a3368550ed0fa2c7ee5",311 "language": "Python",312 "lines": 62,313 "truncated": false,314 "block": 15,315 "row": 10616316 },317 {318 "path": "src/liana/method/sc/_connectome.py",319 "sha256": "234345da8c09704b4f40f385bf3e09151eb8cb30aff148bedb05b95973a7cf14",320 "language": "Python",321 "lines": 49,322 "truncated": false,323 "block": 15,324 "row": 9420325 },326 {327 "path": "src/liana/method/sc/_geometric_mean.py",328 "sha256": "a83bb554a5c46a28c707839a52abd62bbeacd8d620af2a52074dd1c60ccdd6cf",329 "language": "Python",330 "lines": 51,331 "truncated": false,332 "block": 15,333 "row": 9601334 },335 {336 "path": "src/liana/method/sc/_liana_pipe.py",337 "sha256": "5354d2cae7453c75688e9b6783f8821e5147e4703640f366b45e1966d1d2eff8",338 "language": "Python",339 "lines": 778,340 "truncated": false,341 "block": 16,342 "row": 136343 },344 {345 "path": "src/liana/method/sc/_logfc.py",346 "sha256": "eaf91a8426c77e5b50b64bb4904786bb8fcf2a4ff462310079b98ee3c13e6bae",347 "language": "Python",348 "lines": 32,349 "truncated": false,350 "block": 15,351 "row": 8409352 },353 {354 "path": "src/liana/method/sc/_natmi.py",355 "sha256": "8dff30d235f522ca12e2abb3f96fb92275d2e28c5ea089f67d645825dfa798bd",356 "language": "Python",357 "lines": 52,358 "truncated": false,359 "block": 15,360 "row": 10374361 },362 {363 "path": "src/liana/method/sc/_rank_aggregate.py",364 "sha256": "88032b1f511b700ac8d21355cfa66b4bf48d444059ed0e98774ee61593e399b5",365 "language": "Python",366 "lines": 219,367 "truncated": false,368 "block": 15,369 "row": 20242370 },371 {372 "path": "src/liana/method/sc/_scseqcomm.py",373 "sha256": "689c807d5e698d6c222b7ea8bb489f3c78855cfef20d73ecf427471f793808eb",374 "language": "Python",375 "lines": 41,376 "truncated": false,377 "block": 15,378 "row": 8576379 },380 {381 "path": "src/liana/method/sc/_singlecellsignalr.py",382 "sha256": "bb1bee2020968b01036ed5fd1d5cd132efa7c6bc1e8d5f33020aef41b90926a5",383 "language": "Python",384 "lines": 45,385 "truncated": false,386 "block": 15,387 "row": 8751388 },389 {390 "path": "src/liana/method/sp/_LRIC.py",391 "sha256": "3bb69cf1ad6aa2eabdf96357f04cff16ec5031c7c1c88a57c1e12c50d979bd4a",392 "language": "Python",393 "lines": 1150,394 "truncated": false,395 "block": 16,396 "row": 1152397 },398 {399 "path": "src/liana/method/sp/__init__.py",400 "sha256": "ba02db4c77e920b4cf74500a193d48088edc111163c0c3b28678e9e525211be1",401 "language": "Python",402 "lines": 27,403 "truncated": false,404 "block": 15,405 "row": 7688406 },407 {408 "path": "src/liana/method/sp/_bivariate/_global_functions.py",409 "sha256": "7f9392f28f853cd400d4486a75bf5f4c2c54397d75dc947b5661b0595c94e613",410 "language": "Python",411 "lines": 196,412 "truncated": false,413 "block": 15,414 "row": 18561415 },416 {417 "path": "src/liana/method/sp/_bivariate/_local_functions.py",418 "sha256": "173dde7d71ebf4173acd795caf52228ead21754613a6d955d571c3a2714ad653",419 "language": "Python",420 "lines": 557,421 "truncated": false,422 "block": 15,423 "row": 24775424 },425 {426 "path": "src/liana/method/sp/_bivariate/_spatial_bivariate.py",427 "sha256": "c82c94acbcd917476424ef56fdf2b8b74dfd39eae84cd7d073a5e95167cc1201",428 "language": "Python",429 "lines": 334,430 "truncated": false,431 "block": 15,432 "row": 22832433 },434 {435 "path": "src/liana/method/sp/_compute_global_specificity.py",436 "sha256": "38b6eb7c2ba6d1bd432fa3de2cfb08436c9e08c4944d79b096e7bcc9c5a5df3b",437 "language": "Python",438 "lines": 150,439 "truncated": false,440 "block": 15,441 "row": 18437442 },443 {444 "path": "src/liana/method/sp/_inflow.py",445 "sha256": "e74ca0fdb8c846b9e13c4184de0b80d789894d6ad8b2ca6d90c7d2bb4fca1849",446 "language": "Python",447 "lines": 359,448 "truncated": false,449 "block": 15,450 "row": 23791451 },452 {453 "path": "src/liana/method/sp/_lric_helpers.py",454 "sha256": "9dc6fac8b424385919229f0386d3b9657db22273ecc7d5180b276f62d2d2b3ea",455 "language": "Python",456 "lines": 290,457 "truncated": false,458 "block": 15,459 "row": 23098460 },461 {462 "path": "src/liana/method/sp/_misty/_Misty.py",463 "sha256": "d2278e6b5cd1363273add7f63c06f7f0ee6595e68e645f8b2bde4149d111b867",464 "language": "Python",465 "lines": 476,466 "truncated": false,467 "block": 15,468 "row": 24920469 },470 {471 "path": "src/liana/method/sp/_misty/_misty_constructs.py",472 "sha256": "c090e7f4f3816ab4df8562c5e7e6a5b42c3310df4ae34db36614a914731ab4d4",473 "language": "Python",474 "lines": 306,475 "truncated": false,476 "block": 15,477 "row": 21913478 },479 {480 "path": "src/liana/method/sp/_misty/_single_view_models.py",481 "sha256": "72538bd48f2078324e41fb0fda71f89dfbd082d8cdf99918b03202f31bb7417f",482 "language": "Python",483 "lines": 215,484 "truncated": false,485 "block": 15,486 "row": 20600487 },488 {489 "path": "src/liana/method/sp/_utils.py",490 "sha256": "70e0b6dbe84de005949b1b89a7fbfdca09ffb1bb1bf27b3bb4685ea460e69219",491 "language": "Python",492 "lines": 276,493 "truncated": false,494 "block": 15,495 "row": 20476496 },497 {498 "path": "src/liana/multisample/__init__.py",499 "sha256": "5b902085e577d95bb9f0d8cc6ed3943d621333235706b0a60b58bf5d56f405a8",500 "language": "Python",501 "lines": 18,502 "truncated": false,503 "block": 15,504 "row": 7144505 },506 {507 "path": "src/liana/multisample/_getters.py",508 "sha256": "2a6262e3d231117187a1d43507b5400000c995e64025d1cd1db7b6818d3a0855",509 "language": "Python",510 "lines": 192,511 "truncated": false,512 "block": 15,513 "row": 19547514 },515 {516 "path": "src/liana/multisample/_nmf.py",517 "sha256": "b29d54255eb1365f3ec63f2a3f26d2816b3a64530c265ef6e20fae394d92a2b0",518 "language": "Python",519 "lines": 188,520 "truncated": false,521 "block": 15,522 "row": 19394523 },524 {525 "path": "src/liana/multisample/mdata_to_anndata.py",526 "sha256": "33b5bd1626b63f2144fb4d2a7c8a51d98bde17d152dac9aa9575d57171c3f3ea",527 "language": "Python",528 "lines": 147,529 "truncated": false,530 "block": 15,531 "row": 17447532 },533 {534 "path": "src/liana/multisample/to_mudata.py",535 "sha256": "253c7214e86254b3affb2b384aabb9c747f4e61ea71d44f7979adc7b61d2cf35",536 "language": "Python",537 "lines": 632,538 "truncated": false,539 "block": 15,540 "row": 25637541 },542 {543 "path": "src/liana/multisample/to_tensor_c2c.py",544 "sha256": "9fee0381d0291a7c1748fdb9d48004b77a438c0751ad333771e46e75903be29f",545 "language": "Python",546 "lines": 139,547 "truncated": false,548 "block": 15,549 "row": 16499550 },551 {552 "path": "src/liana/plotting/__init__.py",553 "sha256": "7cb2423653fc0bb732abeadb655ac5845db26e4c80d6be6f9c09f98d7b1a1562",554 "language": "Python",555 "lines": 61,556 "truncated": false,557 "block": 15,558 "row": 11248559 },560 {561 "path": "src/liana/plotting/_annulus.py",562 "sha256": "be51ca662b557eb303106a30a50cc5b297fdc8a5f72c1a4e27f20ea3f881abb6",563 "language": "Python",564 "lines": 158,565 "truncated": false,566 "block": 15,567 "row": 17368568 },569 {570 "path": "src/liana/plotting/_circle_plot.py",571 "sha256": "3e2317abef1d3bddb2415113e642e9cafb25936253aced9deb9348cad1752278",572 "language": "Python",573 "lines": 324,574 "truncated": false,575 "block": 15,576 "row": 23199577 },578 {579 "path": "src/liana/plotting/_common.py",580 "sha256": "5c9f4ae62d893c8f5538cf527bb59daa2b9687c50bc5457a517cdeb8c5ffe40d",581 "language": "Python",582 "lines": 129,583 "truncated": false,584 "block": 15,585 "row": 15922586 },587 {588 "path": "src/liana/plotting/_connectivity_plot.py",589 "sha256": "92328f8f737d302a3398343db18db421a7199e6166b9313b5ad8987bab2899df",590 "language": "Python",591 "lines": 89,592 "truncated": false,593 "block": 15,594 "row": 12630595 },596 {597 "path": "src/liana/plotting/_dotplot.py",598 "sha256": "f77a5a5a66823e274e40fa3908c6e861b0cab5ead4e0ae75af2254344d0af03c",599 "language": "Python",600 "lines": 254,601 "truncated": false,602 "block": 15,603 "row": 20046604 },605 {606 "path": "src/liana/plotting/_elbow.py",607 "sha256": "8800df6625207650b8ddc9c23faea3663d398e471924895352a1c6f681ca4d9b",608 "language": "Python",609 "lines": 76,610 "truncated": false,611 "block": 15,612 "row": 11936613 },614 {615 "path": "src/liana/plotting/_feature_by_group.py",616 "sha256": "8a706527c4f32d9c9c60d28ef959b0358469c10a66c429caab9492abfb30ebf3",617 "language": "Python",618 "lines": 185,619 "truncated": false,620 "block": 15,621 "row": 18714622 },623 {624 "path": "src/liana/plotting/_lric_plot.py",625 "sha256": "47704ef9424175f3a7e1ed9a6e024f70f2b08dba229d4dea0b801e432a4c6ce1",626 "language": "Python",627 "lines": 239,628 "truncated": false,629 "block": 15,630 "row": 21008631 },632 {633 "path": "src/liana/plotting/_misty_plots.py",634 "sha256": "905bf203ae961caff778ab413682b6c6964881ed15e2d137f71788ed0efa018e",635 "language": "Python",636 "lines": 288,637 "truncated": false,638 "block": 15,639 "row": 21532640 },641 {642 "path": "src/liana/plotting/_tileplot.py",643 "sha256": "84b231063e7b0b980c1895266a0e5788678a9580e1d29c943871670544458a7a",644 "language": "Python",645 "lines": 159,646 "truncated": false,647 "block": 15,648 "row": 17111649 },650 {651 "path": "src/liana/preprocessing/__init__.py",652 "sha256": "26bc632ed6e3bb51b165bca7a12b10985a54efb04de12363f15473ed2e9bf0b2",653 "language": "Python",654 "lines": 17,655 "truncated": false,656 "block": 15,657 "row": 7192658 },659 {660 "path": "src/liana/preprocessing/expand_coordinates.py",661 "sha256": "e50ddb6b9bd5111a55e12cd895094174819a98a96df123646a61223a1e9a7548",662 "language": "Python",663 "lines": 100,664 "truncated": false,665 "block": 15,666 "row": 14864667 },668 {669 "path": "src/liana/preprocessing/interpolate_adata.py",670 "sha256": "87a1951aa77e1bbf74ca798c75d392863a62a9f998211aab2fbc134a78b6c35a",671 "language": "Python",672 "lines": 87,673 "truncated": false,674 "block": 15,675 "row": 12738676 },677 {678 "path": "src/liana/preprocessing/obsm_to_adata.py",679 "sha256": "5307e92630d05dfa2d2297e9afd2da51dd400a5a72b3a1e66a778762a74f606d",680 "language": "Python",681 "lines": 71,682 "truncated": false,683 "block": 15,684 "row": 11256685 },686 {687 "path": "src/liana/preprocessing/query_bandwidth.py",688 "sha256": "3e23e3e68e065b1e396a3dfbc221f4e1da1b71bf8390a8da79123b5d2f946ea8",689 "language": "Python",690 "lines": 82,691 "truncated": false,692 "block": 15,693 "row": 12225694 },695 {696 "path": "src/liana/preprocessing/spatial_neighbors.py",697 "sha256": "b4518a094ea03270b12b27f5a66f387f4c57ad5f3508e454f6d8126c4383f596",698 "language": "Python",699 "lines": 378,700 "truncated": false,701 "block": 15,702 "row": 23939703 },704 {705 "path": "src/liana/preprocessing/transform.py",706 "sha256": "b69634c52d4ddc38c04d4d9cce6315cb3cff3d6ec330965b62fb41fccd1f0456",707 "language": "Python",708 "lines": 119,709 "truncated": false,710 "block": 15,711 "row": 15108712 },713 {714 "path": "src/liana/resource/__init__.py",715 "sha256": "5c5e6b166390eafca22343063d121117046ac99387a2392d0673f9a80803dd0b",716 "language": "Python",717 "lines": 18,718 "truncated": false,719 "block": 15,720 "row": 7100721 },722 {723 "path": "src/liana/resource/_orthology.py",724 "sha256": "777127b3e990531ad6f9c5e79da7dfc997b5352fe546a56eaf459e1f6cadd482",725 "language": "Python",726 "lines": 336,727 "truncated": false,728 "block": 15,729 "row": 22855730 },731 {732 "path": "src/liana/resource/_prior_network.py",733 "sha256": "547e01d20985d4a47faae80fdf575c7fefb81718b6a188d6d876cbdbb16dc7f5",734 "language": "Python",735 "lines": 112,736 "truncated": false,737 "block": 15,738 "row": 16841739 },740 {741 "path": "src/liana/resource/_reassemble_complexes.py",742 "sha256": "8d6e7398155ef90a1c39232083726fc65d4488d0f27f56444284c92df6defed3",743 "language": "Python",744 "lines": 144,745 "truncated": false,746 "block": 15,747 "row": 16666748 },749 {750 "path": "src/liana/resource/_resource_utils.py",751 "sha256": "3e08d934e7828fc9aab86482f3c3f66be2e8c8224f1a944da7c3614223a61881",752 "language": "Python",753 "lines": 194,754 "truncated": false,755 "block": 15,756 "row": 20036757 },758 {759 "path": "src/liana/resource/get_metalinks.py",760 "sha256": "aad2105ec90febdd38912a388fe7ed44e118016223a96a3c228bc065565692fc",761 "language": "Python",762 "lines": 271,763 "truncated": false,764 "block": 15,765 "row": 21048766 },767 {768 "path": "src/liana/resource/select_resource.py",769 "sha256": "dce8fcfb6cc241a8e2717fe65130ec11ce145c9e86539d4577a59b63bf114e38",770 "language": "Python",771 "lines": 122,772 "truncated": false,773 "block": 15,774 "row": 15747775 },776 {777 "path": "tests/_helpers.py",778 "sha256": "d649c1305bad2c1af2f125af31f5012488a322147f24d1fb41d79f399454f671",779 "language": "Python",780 "lines": 124,781 "truncated": false,782 "block": 15,783 "row": 14882784 },785 {786 "path": "tests/conftest.py",787 "sha256": "cc5ee176e648aa24b96834e03c6198f47413f281bd82e376f64140c12f7e3e72",788 "language": "Python",789 "lines": 84,790 "truncated": false,791 "block": 15,792 "row": 11168793 },794 {795 "path": "tests/method/sc/test_liana_pipe.py",796 "sha256": "ce0bf555c1b0d98f752cfecbc10c0e86521128b3c60fc9740fe849982eebe3bc",797 "language": "Python",798 "lines": 253,799 "truncated": false,800 "block": 15,801 "row": 21559802 },803 {804 "path": "tests/method/sc/test_methods.py",805 "sha256": "80cc23d3e6abdc9fe0239e586d0581b8aae0612d090a9303ccaf142bbb87efdc",806 "language": "Python",807 "lines": 316,808 "truncated": false,809 "block": 15,810 "row": 23389811 },812 {813 "path": "tests/method/sc/test_rank_aggregate.py",814 "sha256": "61123d88f8c0776f17bdd17e246e55a697597da088ed126e52e5162ad7601bd6",815 "language": "Python",816 "lines": 282,817 "truncated": false,818 "block": 15,819 "row": 22812820 },821 {822 "path": "tests/method/sp/test_LRIC.py",823 "sha256": "ed661bdd1593f7092ce06276d1f51aaba566e08cf3166656c9f4a100399d5f5c",824 "language": "Python",825 "lines": 850,826 "truncated": false,827 "block": 16,828 "row": 644829 },830 {831 "path": "tests/method/sp/test_bivariate_funs.py",832 "sha256": "fc986e9ba39aea2ebad1a63eeb0c137ab76d9bd95f2ce1d6b6a12c0eb1068f13",833 "language": "Python",834 "lines": 405,835 "truncated": false,836 "block": 15,837 "row": 24215838 },839 {840 "path": "tests/method/sp/test_compute_global_specificity.py",841 "sha256": "601a13d63a490a902727533da5872fafa0d9b07a62a0f11a6289d3a6e5fc5ad5",842 "language": "Python",843 "lines": 53,844 "truncated": false,845 "block": 15,846 "row": 11466847 },848 {849 "path": "tests/method/sp/test_inflow.py",850 "sha256": "2d1cfba07312f86b583a8760e50754819895693e4a8a0325862d90d7c62e9b96",851 "language": "Python",852 "lines": 336,853 "truncated": false,854 "block": 15,855 "row": 23025856 },857 {858 "path": "tests/method/sp/test_misty.py",859 "sha256": "73a592c527c57970b4a7dfeb95da1cedbd438134573ff802bcc9888dc9b86eb5",860 "language": "Python",861 "lines": 230,862 "truncated": false,863 "block": 15,864 "row": 21592865 },866 {867 "path": "tests/method/sp/test_spatial_bivariate.py",868 "sha256": "fbabcf7fb2ddfb8c0fffc865418cf7baa157bd07a8c0a9217d6bbbec4ee75746",869 "language": "Python",870 "lines": 300,871 "truncated": false,872 "block": 15,873 "row": 22156874 },875 {876 "path": "tests/method/test_causalnet.py",877 "sha256": "6bcf40708471b6603b51610b0d47678874c60a4db953b0224676fc86aca633dd",878 "language": "Python",879 "lines": 92,880 "truncated": false,881 "block": 15,882 "row": 13218883 },884 {885 "path": "tests/method/test_estimate_metalinks.py",886 "sha256": "0cb89b55a346adf844065537b200518cd857e3503da9b06fcfb3824e8d4cded5",887 "language": "Python",888 "lines": 23,889 "truncated": false,890 "block": 15,891 "row": 8508892 },893 {894 "path": "tests/method/test_get_mean_perms.py",895 "sha256": "bab3bf0a973dd354b726c66907956af8d3b6dcffc69a03d6226f89271784cfd0",896 "language": "Python",897 "lines": 102,898 "truncated": false,899 "block": 15,900 "row": 14112901 },902 {903 "path": "tests/method/test_pre.py",904 "sha256": "5abf9a593f647fbbbca45f6cbb30f0d5e86fc6c62a680932d0da08fcfd54f625",905 "language": "Python",906 "lines": 179,907 "truncated": false,908 "block": 15,909 "row": 20580910 },911 {912 "path": "tests/multi/test_df_to_lr.py",913 "sha256": "039e477a13936e8da0e3f3febbca5e53e33b1ff01093099a25ca5b70734c1945",914 "language": "Python",915 "lines": 88,916 "truncated": false,917 "block": 15,918 "row": 12333919 },920 {921 "path": "tests/multi/test_nmf.py",922 "sha256": "2bcfcfe75b227b0ef238f99e2bd3b43f8a26cdd9e3bd4fbcd8d509f5dc654322",923 "language": "Python",924 "lines": 58,925 "truncated": false,926 "block": 15,927 "row": 11109928 },929 {930 "path": "tests/multi/test_to_mudata.py",931 "sha256": "0680b9ffa1e90f4637d84a4b5ed6db48a0aa4df0c6667ad92b3c95149be0cdb9",932 "language": "Python",933 "lines": 244,934 "truncated": false,935 "block": 15,936 "row": 20583937 },938 {939 "path": "tests/multi/test_to_tensor_c2c.py",940 "sha256": "19606e80ea0eeb974d20b474fcb1708beaf93e1583d7335815d6afc241ef4618",941 "language": "Python",942 "lines": 28,943 "truncated": false,944 "block": 15,945 "row": 8408946 },947 {948 "path": "tests/plotting/test_annulus.py",949 "sha256": "1f8a06eaba5a28233f59b12783e92f662951c4771d257d0e17cc9095e7007ac8",950 "language": "Python",951 "lines": 22,952 "truncated": false,953 "block": 15,954 "row": 7039955 },956 {957 "path": "tests/plotting/test_circle_plot.py",958 "sha256": "caae9840d5a0b59757c93bc5bfe28858ace5e3251b52680a6994755be6a72720",959 "language": "Python",960 "lines": 253,961 "truncated": false,962 "block": 15,963 "row": 22471964 },965 {966 "path": "tests/plotting/test_common.py",967 "sha256": "73d36c53506171f45278c3a646100945502b159b88041f1ea353eb1c224033f8",968 "language": "Python",969 "lines": 120,970 "truncated": false,971 "block": 15,972 "row": 16982973 },974 {975 "path": "tests/plotting/test_connectivity_plot.py",976 "sha256": "031509b93bb6a0e6fd456e0de30b17f7d543b8d4c625f39b40a79151b10ff987",977 "language": "Python",978 "lines": 26,979 "truncated": false,980 "block": 15,981 "row": 8459982 },983 {984 "path": "tests/plotting/test_dotplot.py",985 "sha256": "83a934c183dbd41de8817b530208b999b5d77eca56efaa9c0a317dbed287823c",986 "language": "Python",987 "lines": 62,988 "truncated": false,989 "block": 15,990 "row": 11074991 },992 {993 "path": "tests/plotting/test_elbow.py",994 "sha256": "dbde43ca398729fb189d1cf633a3aac62b29c591b489258bb9d739795c48f07a",995 "language": "Python",996 "lines": 20,997 "truncated": false,998 "block": 15,999 "row": 76321000 },1001 {1002 "path": "tests/plotting/test_feature_by_group.py",1003 "sha256": "8ca81d5eac102be11ab79127d8bac347f0f228c84c1915d330678450a6584d39",1004 "language": "Python",1005 "lines": 74,1006 "truncated": false,1007 "block": 15,1008 "row": 138491009 },1010 {1011 "path": "tests/plotting/test_lric_plot.py",1012 "sha256": "cf7109b8dfdda3d8cf4ae01b81f63e7d367ca8306e95f764114e30ba0f4b6253",1013 "language": "Python",1014 "lines": 127,1015 "truncated": false,1016 "block": 15,1017 "row": 165351018 },1019 {1020 "path": "tests/plotting/test_misty_plots.py",1021 "sha256": "aa3e067337667482f5bb9016c93d57d0956d782621de23694cb7c7fc6b613677",1022 "language": "Python",1023 "lines": 212,1024 "truncated": false,1025 "block": 15,1026 "row": 210781027 },1028 {1029 "path": "tests/plotting/test_tileplot.py",1030 "sha256": "5744f716c238d93bb950991b6ebb38608fa0f1f16b584b0412769a3c9148b7b6",1031 "language": "Python",1032 "lines": 26,1033 "truncated": false,1034 "block": 15,1035 "row": 83951036 },1037 {1038 "path": "tests/resource/conftest.py",1039 "sha256": "0ab91e68212fd26dd731c676239483d92dea09c0a49453eda53643ea2daaa643",1040 "language": "Python",1041 "lines": 41,1042 "truncated": false,1043 "block": 15,1044 "row": 95281045 },1046 {1047 "path": "tests/resource/test_get_metalinks.py",1048 "sha256": "665be97b6157ef5bc66855cc36cdeb8985853f1b9a70981b062d3a1b49a3aa01",1049 "language": "Python",1050 "lines": 58,1051 "truncated": false,1052 "block": 15,1053 "row": 112551054 },1055 {1056 "path": "tests/resource/test_orthology.py",1057 "sha256": "d304854defd44b86b2e57623dce9454fb2397a1574e4b139a97eb13e000b4363",1058 "language": "Python",1059 "lines": 170,1060 "truncated": false,1061 "block": 15,1062 "row": 181511063 },1064 {1065 "path": "tests/resource/test_resource_utils.py",1066 "sha256": "40485aec5a85c34f25da2080d919b2c6a3220d09753a5488aa9e06a62e76eee9",1067 "language": "Python",1068 "lines": 58,1069 "truncated": false,1070 "block": 15,1071 "row": 111161072 },1073 {1074 "path": "tests/resource/test_select_resource.py",1075 "sha256": "c7a996117a8c98bdea8a144eb4b829d980a5a0c73a0666154d1c455576a25cf9",1076 "language": "Python",1077 "lines": 108,1078 "truncated": false,1079 "block": 15,1080 "row": 141271081 },1082 {1083 "path": "tests/skills/test_install_skills.py",1084 "sha256": "48608a139655e075686b92b432da3a50d6c5adce5b615f68f177e62e10feef0e",1085 "language": "Python",1086 "lines": 113,1087 "truncated": false,1088 "block": 15,1089 "row": 160841090 },1091 {1092 "path": "tests/test_datasets_registry.py",1093 "sha256": "44b418d4aa0ae20d27106290dbb37bac6e39e74e2695276f1886cda02d0742ac",1094 "language": "Python",1095 "lines": 30,1096 "truncated": false,1097 "block": 15,1098 "row": 85471099 },1100 {1101 "path": "tests/utils/test_expand_coordinates.py",1102 "sha256": "ff9d86dbcdfa4673920f60e7f13a0175508e47a393acdf1e15272325a63378fc",1103 "language": "Python",1104 "lines": 117,1105 "truncated": false,1106 "block": 15,1107 "row": 167561108 },1109 {1110 "path": "tests/utils/test_getters.py",1111 "sha256": "e3e38bbee321ae369c743da3bc30b3318c19d71ce4ab73fc9ee231da2af3a027",1112 "language": "Python",1113 "lines": 94,1114 "truncated": false,1115 "block": 15,1116 "row": 147721117 },1118 {1119 "path": "tests/utils/test_interpolate_adata.py",1120 "sha256": "acc29343858ccb6e0f48acd3c96888e7a70d124ad2e279d3910749b80a682aa8",1121 "language": "Python",1122 "lines": 71,1123 "truncated": false,1124 "block": 15,1125 "row": 119111126 },1127 {1128 "path": "tests/utils/test_lric_helpers.py",1129 "sha256": "d4f9b8fdd4988e716b43fb79602e9b293060e14ca7abb22c413cf1a24d65d5ee",1130 "language": "Python",1131 "lines": 191,1132 "truncated": false,1133 "block": 15,1134 "row": 200201135 },1136 {1137 "path": "tests/utils/test_mdata_to_anndata.py",1138 "sha256": "fe9e8ab3d1ddb61b6f84fbd6c27f936a7e14d3bd8e1f46eb746ea9e2f1146133",1139 "language": "Python",1140 "lines": 78,1141 "truncated": false,1142 "block": 15,1143 "row": 134221144 },1145 {1146 "path": "tests/utils/test_spatial_neighbors.py",1147 "sha256": "4a46f9570dac10b4cde33b465a0ee578f38c7eb60cb93c28b86ea407a780af93",1148 "language": "Python",1149 "lines": 239,1150 "truncated": false,1151 "block": 15,1152 "row": 213631153 },1154 {1155 "path": "tests/utils/test_transform.py",1156 "sha256": "c17f287c8ca31cbde88621ea424c0cd32ff17de478bb29669415b3201c9bdf57",1157 "language": "Python",1158 "lines": 29,1159 "truncated": false,1160 "block": 15,1161 "row": 85981162 }1163 ]1164}