OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/harveylab/acquisition2p_class",4 "url": "https://github.com/HarveyLab/Acquisition2P_class",5 "host": "github.com",6 "commit": "a366a2af6741a8e552b3ce10a32dd7134ae78dbd",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE.txt",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE.txt",13 "sha256": "675de099568df49036497b583a271491c01a35a150a925956f0e413dca858b9e",14 "language": "License",15 "lines": 21,16 "truncated": false,17 "block": 2,18 "row": 114019 },20 {21 "path": "README.md",22 "sha256": "1c74ec6d8556c0d5ed2f57b5664a5d448d8dfd0cfae88e5ee2f0f17f1ee73ca4",23 "language": "Text",24 "lines": 16,25 "truncated": false,26 "block": 2,27 "row": 259028 },29 {30 "path": "Using the Acquisition2P Class.m",31 "sha256": "bfa6541fa72feb5e8c55b6af2db3cc02d6c9f4c3e30e3f125a80b73c7178025c",32 "language": "MATLAB",33 "lines": 251,34 "truncated": false,35 "block": 2,36 "row": 154437 },38 {39 "path": "Using the ROI selection tool.m",40 "sha256": "27538e655f0214b5353d0017645f480f0bea5e1dcbad9c435fa4fcbadc1f43d2",41 "language": "MATLAB",42 "lines": 210,43 "truncated": false,44 "block": 2,45 "row": 154546 },47 {48 "path": "classes/@Acquisition2P/Acquisition2P.m",49 "sha256": "033c2901e2c0b571026a5fe8a5a44020ad39dbb800b6201bf999a37f51976a5c",50 "language": "MATLAB",51 "lines": 128,52 "truncated": false,53 "block": 2,54 "row": 147155 },56 {57 "path": "classes/@Acquisition2P/addMovie.m",58 "sha256": "c624f1b453a353286402c91ac980bf809c0c46bfe0992b4e36d76e71940ba6de",59 "language": "MATLAB",60 "lines": 19,61 "truncated": false,62 "block": 2,63 "row": 121564 },65 {66 "path": "classes/@Acquisition2P/avgMov.m",67 "sha256": "3de2295b7db06e921033103fc94237df165bb0a202c24b3b5b7f57138d310368",68 "language": "MATLAB",69 "lines": 61,70 "truncated": false,71 "block": 2,72 "row": 133173 },74 {75 "path": "classes/@Acquisition2P/calcPxCov.m",76 "sha256": "330049ed9d4994d9160ee9225a3d3c63db7a74461ebab2627081c450d062a7ac",77 "language": "MATLAB",78 "lines": 111,79 "truncated": false,80 "block": 2,81 "row": 142482 },83 {84 "path": "classes/@Acquisition2P/deconvNmf.m",85 "sha256": "290f605c340ab9af4d625e88a8593fa953fd5c0e9b487f45f1e6a456f7ece98f",86 "language": "MATLAB",87 "lines": 30,88 "truncated": false,89 "block": 2,90 "row": 125391 },92 {93 "path": "classes/@Acquisition2P/extractROIsBin.m",94 "sha256": "fb1fbb535279aa15346e731b1fa606f87c2e26fff49f04371c6c95112736af5c",95 "language": "MATLAB",96 "lines": 82,97 "truncated": false,98 "block": 2,99 "row": 1380100 },101 {102 "path": "classes/@Acquisition2P/extractROIsTIFF.m",103 "sha256": "14d68bc980484c7546f3502cbec8168b13ed7837937f97ae96126adc9da5b877",104 "language": "MATLAB",105 "lines": 73,106 "truncated": false,107 "block": 2,108 "row": 1389109 },110 {111 "path": "classes/@Acquisition2P/extractSources.m",112 "sha256": "32c1ddc595d0532f52774ec7dd4a9a476aae2a239bbad82db91d154666708208",113 "language": "MATLAB",114 "lines": 48,115 "truncated": false,116 "block": 2,117 "row": 1276118 },119 {120 "path": "classes/@Acquisition2P/indexMovie.m",121 "sha256": "404758469f9f9a7774cb2394252c66cc316be926633775b4d0eca0fc412a1cea",122 "language": "MATLAB",123 "lines": 151,124 "truncated": false,125 "block": 2,126 "row": 1454127 },128 {129 "path": "classes/@Acquisition2P/mat2binInd.m",130 "sha256": "38e67d170cf7aef85aed199168df602608472e15f1a6e704d05f666ef5b00837",131 "language": "MATLAB",132 "lines": 11,133 "truncated": false,134 "block": 2,135 "row": 1199136 },137 {138 "path": "classes/@Acquisition2P/meanRef.m",139 "sha256": "74beb02a11fd09c1d0140605cbf4f303ac2fe02ddf4d495cff8b547193a9c1f9",140 "language": "MATLAB",141 "lines": 50,142 "truncated": false,143 "block": 2,144 "row": 1306145 },146 {147 "path": "classes/@Acquisition2P/motionCorrect.m",148 "sha256": "763bad367c55e1278ea0581fc1a684de76054d5dea309dadf11de9d7e5f1fa3d",149 "language": "MATLAB",150 "lines": 145,151 "truncated": false,152 "block": 2,153 "row": 1460154 },155 {156 "path": "classes/@Acquisition2P/newDir.m",157 "sha256": "8a30f24b6ec6dd19af81f6a3eb544ae706d222ea79cf4cac780cfb93aef12a71",158 "language": "MATLAB",159 "lines": 88,160 "truncated": false,161 "block": 2,162 "row": 1411163 },164 {165 "path": "classes/@Acquisition2P/save.m",166 "sha256": "1ac02d12bedc2abfd0e8df92d64b5e70d439842a600c57a03e6b908a59833017",167 "language": "MATLAB",168 "lines": 33,169 "truncated": false,170 "block": 2,171 "row": 1228172 },173 {174 "path": "classes/@Acquisition2P/selectROIs.m",175 "sha256": "7f89b73be772fae7a7c01613e37cc80e6646f320ed2f6576da858b87f34c8de8",176 "language": "MATLAB",177 "lines": 66,178 "truncated": false,179 "block": 2,180 "row": 1367181 },182 {183 "path": "classes/@acq2pJobProcessor/acq2pJobProcessor.m",184 "sha256": "03b675256172e90c1256079b94a607a9df9ea3e1d901db4670b5073a60b3e0c2",185 "language": "MATLAB",186 "lines": 42,187 "truncated": false,188 "block": 2,189 "row": 1258190 },191 {192 "path": "classes/@acq2pJobProcessor/loadNextAcq.m",193 "sha256": "e317ef75f6fa85ac8bda2aa0d632f94e65ed7e18421025afabb2c122be4b0bda",194 "language": "MATLAB",195 "lines": 41,196 "truncated": false,197 "block": 2,198 "row": 1279199 },200 {201 "path": "classes/@acq2pJobProcessor/log.m",202 "sha256": "a5fa919a5e5eb80b6577ce4e41572ada5ce36b2cfb699f108019a28394bfe132",203 "language": "MATLAB",204 "lines": 54,205 "truncated": false,206 "block": 2,207 "row": 1262208 },209 {210 "path": "classes/@acq2pJobProcessor/processCurrentAcq.m",211 "sha256": "5632476bd2a5be90fe3deae73a01d05de4ad1baf552c6e391c0d6e6ee5b96338",212 "language": "MATLAB",213 "lines": 201,214 "truncated": false,215 "block": 2,216 "row": 1483217 },218 {219 "path": "classes/@acq2pJobProcessor/readme.m",220 "sha256": "a1bfeb7f8297c2229d7196f78a76937e2a64e31e5f17531f9fc977a25f6069a3",221 "language": "MATLAB",222 "lines": 95,223 "truncated": false,224 "block": 2,225 "row": 1421226 },227 {228 "path": "classes/@acq2pJobProcessor/run.m",229 "sha256": "7d80890c32215af60adf38aa30908c4950f39c98da2d82fdf72a006c1d15ba12",230 "language": "MATLAB",231 "lines": 28,232 "truncated": false,233 "block": 2,234 "row": 1216235 },236 {237 "path": "classes/@acq2pJobProcessor/saveCurrentAcq.m",238 "sha256": "ed6ef20ba005cfaa026850295a2cfb30b1061d2301357d38d89552bdbd638815",239 "language": "MATLAB",240 "lines": 26,241 "truncated": false,242 "block": 2,243 "row": 1218244 },245 {246 "path": "classes/@acq2pJobProcessor/stop.m",247 "sha256": "22c436353c525cf7740578397d9bc3bcbf44d879d305757ec501bdf8f5fb6353",248 "language": "MATLAB",249 "lines": 4,250 "truncated": false,251 "block": 2,252 "row": 1158253 },254 {255 "path": "classes/@selectRoisGui/addOverlayTrace.m",256 "sha256": "5a8b24162a35235edf80e6b969d69d2fd1d6fe8d674c724680446c74794c49c5",257 "language": "MATLAB",258 "lines": 26,259 "truncated": false,260 "block": 2,261 "row": 1250262 },263 {264 "path": "classes/@selectRoisGui/calcClusterProps.m",265 "sha256": "0e34176f0e7e0c04d5d0f5956221a387f22207972d32b1446f8bb09216abc6d0",266 "language": "MATLAB",267 "lines": 87,268 "truncated": false,269 "block": 2,270 "row": 1369271 },272 {273 "path": "classes/@selectRoisGui/calcRoi.m",274 "sha256": "cb4b2c2ba11a221febd0bc0953cae46016cf2d7bace5853f8d687f881c857549",275 "language": "MATLAB",276 "lines": 24,277 "truncated": false,278 "block": 2,279 "row": 1241280 },281 {282 "path": "classes/@selectRoisGui/cbChangeRoiLabel.m",283 "sha256": "8616f32f3c9c672ae13aea11293e3b406cb24ded53c0eac14c9de9fb2fed1d70",284 "language": "MATLAB",285 "lines": 11,286 "truncated": false,287 "block": 2,288 "row": 1178289 },290 {291 "path": "classes/@selectRoisGui/cbCloseRequestMain.m",292 "sha256": "29a7aa6999046944bbf50441b37989ccc5ccf73c3dd389f139745e84221b6576",293 "language": "MATLAB",294 "lines": 19,295 "truncated": false,296 "block": 2,297 "row": 1184298 },299 {300 "path": "classes/@selectRoisGui/cbDeleteRoi.m",301 "sha256": "9ff17f5691691c10e95fa50b5f748abd67c9270ceca9951ccbf40f64350fadbd",302 "language": "MATLAB",303 "lines": 18,304 "truncated": false,305 "block": 2,306 "row": 1189307 },308 {309 "path": "classes/@selectRoisGui/cbKeypress.m",310 "sha256": "309241dac6b5773e6c0909f4e6e14ec83fad9a16aa0346f87a5f3175ab7b6e9b",311 "language": "MATLAB",312 "lines": 129,313 "truncated": false,314 "block": 2,315 "row": 1457316 },317 {318 "path": "classes/@selectRoisGui/cbKeypressTraceWin.m",319 "sha256": "c2567c57b20bb1d400152b47765ed11e5bc5e667ce7b76bb4f0a67493cef5361",320 "language": "MATLAB",321 "lines": 16,322 "truncated": false,323 "block": 2,324 "row": 1204325 },326 {327 "path": "classes/@selectRoisGui/cbMouseclick.m",328 "sha256": "62efd01c3b22f37269dddfc656889e3575d731be5183c799cba5cc3b981828a2",329 "language": "MATLAB",330 "lines": 148,331 "truncated": false,332 "block": 2,333 "row": 1446334 },335 {336 "path": "classes/@selectRoisGui/cbMousemove.m",337 "sha256": "380e742b5b49e707163b151e4d30cc14f065667388bee9112a0efca1e823cec6",338 "language": "MATLAB",339 "lines": 36,340 "truncated": false,341 "block": 2,342 "row": 1267343 },344 {345 "path": "classes/@selectRoisGui/cbPassThroughKeypressToMain.m",346 "sha256": "40a3bc84813bff161c2378777c994ed98866d688a1b2fbfcf32639a4df353725",347 "language": "MATLAB",348 "lines": 6,349 "truncated": false,350 "block": 2,351 "row": 1167352 },353 {354 "path": "classes/@selectRoisGui/cbScrollwheel.m",355 "sha256": "0ae12ef640f06adae89f7ac993402f9a6d940e3778f57c65ed133c3204cc1072",356 "language": "MATLAB",357 "lines": 58,358 "truncated": false,359 "block": 2,360 "row": 1307361 },362 {363 "path": "classes/@selectRoisGui/cbShowROITrace.m",364 "sha256": "5c206241df6ce955e60a0bcf32f41b05343d7ff43b73f39295ca087fda6f4554",365 "language": "MATLAB",366 "lines": 9,367 "truncated": false,368 "block": 2,369 "row": 1162370 },371 {372 "path": "classes/@selectRoisGui/cbSliderContrast.m",373 "sha256": "67b204431f33989f0058642406bffbea557c967ee7548d6276f07fd1a5aed963",374 "language": "MATLAB",375 "lines": 10,376 "truncated": false,377 "block": 2,378 "row": 1164379 },380 {381 "path": "classes/@selectRoisGui/createGui.m",382 "sha256": "489c52baa5eff0339525b0320f60965916b4627a1926e98369b71f1e7d49b2be",383 "language": "MATLAB",384 "lines": 244,385 "truncated": false,386 "block": 2,387 "row": 1526388 },389 {390 "path": "classes/@selectRoisGui/displayRoi.m",391 "sha256": "770c4a208386ee64319556f911bd8f40e7cb4bebd8ef65865336d125bbcc8684",392 "language": "MATLAB",393 "lines": 60,394 "truncated": false,395 "block": 2,396 "row": 1376397 },398 {399 "path": "classes/@selectRoisGui/doAllClusterTraces.m",400 "sha256": "b42cbbdbb16801a9a3889ab21d1f914597f5b03b327ad62633a932c3fb4e5f4a",401 "language": "MATLAB",402 "lines": 51,403 "truncated": false,404 "block": 2,405 "row": 1368406 },407 {408 "path": "classes/@selectRoisGui/doManualROI.m",409 "sha256": "742131c77a631e88ed8194e60ffcc85ffec5f74fbd8c6778f3d5b8358aee1d69",410 "language": "MATLAB",411 "lines": 42,412 "truncated": false,413 "block": 2,414 "row": 1309415 },416 {417 "path": "classes/@selectRoisGui/doSubTracePlot.m",418 "sha256": "8dc13d32ae20729a9043665d54e4df0ac6e7256a119f3a593eac75b78bfd156a",419 "language": "MATLAB",420 "lines": 38,421 "truncated": false,422 "block": 2,423 "row": 1263424 },425 {426 "path": "classes/@selectRoisGui/findEdges.m",427 "sha256": "9800ed652fd8671d823ef0134e47b2a321c6fc961c4b245f6b69f04aa9c2db75",428 "language": "MATLAB",429 "lines": 22,430 "truncated": false,431 "block": 2,432 "row": 1181433 },434 {435 "path": "classes/@selectRoisGui/getClusters.m",436 "sha256": "3a87df23020e62df2ffe4979d5808804cdff8362c2ced380c4e33785b4d1fab5",437 "language": "MATLAB",438 "lines": 32,439 "truncated": false,440 "block": 2,441 "row": 1265442 },443 {444 "path": "classes/@selectRoisGui/getCovData.m",445 "sha256": "1413b220f7bfd7ec9867038278f6b07d20e1c3cd43a7f8c7ead072faf6fc1218",446 "language": "MATLAB",447 "lines": 65,448 "truncated": false,449 "block": 2,450 "row": 1333451 },452 {453 "path": "classes/@selectRoisGui/mergeCurrentROI.m",454 "sha256": "8f30d4c70c3317da3de074076c674245426637aec101a8afc87cb6255544691d",455 "language": "MATLAB",456 "lines": 22,457 "truncated": false,458 "block": 2,459 "row": 1233460 },461 {462 "path": "classes/@selectRoisGui/nh2movInd.m",463 "sha256": "1e0a101a24b3cdcca6134e537a9034f677fd0b658ee5a6d43d56e4e5b662a6ce",464 "language": "MATLAB",465 "lines": 30,466 "truncated": false,467 "block": 2,468 "row": 1230469 },470 {471 "path": "classes/@selectRoisGui/plotNeuropilTraces.m",472 "sha256": "fd0fde9ccbefda19a0a6ee439bf47ad1d120853f2e3663f4ea562bf1ac61c12c",473 "language": "MATLAB",474 "lines": 80,475 "truncated": false,476 "block": 2,477 "row": 1404478 },479 {480 "path": "classes/@selectRoisGui/plotSubScatterFit.m",481 "sha256": "f6c882d4a9bac4d8f9aaf750aa5bf5c3f0047fb9e24f58247b9935efca464216",482 "language": "MATLAB",483 "lines": 14,484 "truncated": false,485 "block": 2,486 "row": 1214487 },488 {489 "path": "classes/@selectRoisGui/saveNewROI.m",490 "sha256": "755d7c8c6c41bafb75cd5b399bcd2e19b9e15878a0382d78536bcb1aae4e0660",491 "language": "MATLAB",492 "lines": 48,493 "truncated": false,494 "block": 2,495 "row": 1324496 },497 {498 "path": "classes/@selectRoisGui/selectRoisGui.m",499 "sha256": "ff607c35d6ece50a0bbc0b43f5eb151f80425d55ecef637362b7350c192621b0",500 "language": "MATLAB",501 "lines": 83,502 "truncated": false,503 "block": 2,504 "row": 1398505 },506 {507 "path": "classes/@selectRoisGui/splitCurrentROI.m",508 "sha256": "63243e27677d46a78f37f72d63d5e2580fba493c0225f38f13be777b10220d94",509 "language": "MATLAB",510 "lines": 35,511 "truncated": false,512 "block": 2,513 "row": 1254514 },515 {516 "path": "classes/@selectRoisGui/subCoefScrollWheel.m",517 "sha256": "228226c4963ebb33d2405cfcf180e11c7512249c4c29ba44060fc8ecdb5a1026",518 "language": "MATLAB",519 "lines": 31,520 "truncated": false,521 "block": 2,522 "row": 1217523 },524 {525 "path": "classes/@selectRoisGui/updateOverviewDisplay.m",526 "sha256": "ccf87cf83756d114250b603f4366edf00f89617382a3c5662889fd65cf324a83",527 "language": "MATLAB",528 "lines": 123,529 "truncated": false,530 "block": 2,531 "row": 1426532 },533 {534 "path": "common/Motion Correction Files/correctLineShift.m",535 "sha256": "00e50e2c40a374aa4bd720345f0ea92ef8cc432f5eddee88d2637825ae6477c1",536 "language": "MATLAB",537 "lines": 78,538 "truncated": false,539 "block": 2,540 "row": 1374541 },542 {543 "path": "common/Motion Correction Files/correct_translation_singleframe.m",544 "sha256": "930099a356b48a0d4eb857abf8df66e140e2c41a423dbee4044c907676665eb1",545 "language": "MATLAB",546 "lines": 209,547 "truncated": false,548 "block": 2,549 "row": 1507550 },551 {552 "path": "common/Motion Correction Files/lKFast_affineSlow_memMap.m",553 "sha256": "789b9adead96ca3f6d06251d9d62cbfe1941338d9c493a12c9b5e4a0977d9c2d",554 "language": "MATLAB",555 "lines": 191,556 "truncated": false,557 "block": 2,558 "row": 1524559 },560 {561 "path": "common/Motion Correction Files/lucas-kanade/alignFullframeCircshift.m",562 "sha256": "deca45ec3aa51f70e1c235e17d72f3a7a378d56b59ed3ab7b4654a8a72382802",563 "language": "MATLAB",564 "lines": 6,565 "truncated": false,566 "block": 2,567 "row": 1160568 },569 {570 "path": "common/Motion Correction Files/lucas-kanade/correct_scanned_imaging.m",571 "sha256": "fc6465e827fa33ab2a87f8fb11912acb36df7fb1313d1591cbb953d8fe734642",572 "language": "MATLAB",573 "lines": 605,574 "truncated": false,575 "block": 2,576 "row": 1560577 },578 {579 "path": "common/Motion Correction Files/lucas-kanade/detectFullframeRecursive.m",580 "sha256": "d6161a5978091d9d2643e439afbc663c20003ab791c63ada833a5e38b3a5d614",581 "language": "MATLAB",582 "lines": 25,583 "truncated": false,584 "block": 2,585 "row": 1226586 },587 {588 "path": "common/Motion Correction Files/lucas-kanade/doLucasKanade.m",589 "sha256": "5946a972987d1f9599672a9bb471e555cf9f23c5bfda48cf511e2c71e22d56a2",590 "language": "MATLAB",591 "lines": 140,592 "truncated": false,593 "block": 2,594 "row": 1418595 },596 {597 "path": "common/Motion Correction Files/lucas-kanade/doLucasKanadeSPMD.m",598 "sha256": "da5bae8b0bacf4283c6b6b14251e389155e68a6ce7b284c5e9d6671aeca5840a",599 "language": "MATLAB",600 "lines": 292,601 "truncated": false,602 "block": 2,603 "row": 1514604 },605 {606 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/CompileMexFiles.m",607 "sha256": "f3e449054a8efa73915012876c0e5179a0bffaf422fcb1725a297ed0ac283c2e",608 "language": "MATLAB",609 "lines": 6,610 "truncated": false,611 "block": 2,612 "row": 1161613 },614 {615 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/TryBSpline.m",616 "sha256": "8669a6c93da0fcb11ef94e3131534db410b86935486ff56bc5562c9d9d3d2d6f",617 "language": "MATLAB",618 "lines": 151,619 "truncated": false,620 "block": 2,621 "row": 1397622 },623 {624 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBSpline.cpp",625 "sha256": "7656f56780092329d9f0fc64afd47395ed3145c008fe35de70d3619f135a52fe",626 "language": "C++",627 "lines": 162,628 "truncated": false,629 "block": 2,630 "row": 276631 },632 {633 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBin.cpp",634 "sha256": "0fe934042afb1cdb32e04e75d7d1b72b646d5b60e8cfc4701b605e66228d4c50",635 "language": "C++",636 "lines": 162,637 "truncated": false,638 "block": 2,639 "row": 278640 },641 {642 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBin.snip.cpp",643 "sha256": "1f8c2bb02705802a608f063c6755b6aebb1d712ef8f2ddea17d4efd784a7fc75",644 "language": "C++",645 "lines": 10,646 "truncated": false,647 "block": 2,648 "row": 77649 },650 {651 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBinTimesY.cpp",652 "sha256": "6a88cc25d3991f4c6cd369bc011cea0600f4ba5273fad0a106aef065cb3ced9f",653 "language": "C++",654 "lines": 171,655 "truncated": false,656 "block": 2,657 "row": 294658 },659 {660 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBinTimesY.snip.cpp",661 "sha256": "94f395ee06e0c2bd1b91f4d2394a7e75d0832f9271b23d2b35b025e4c9b1494a",662 "language": "C++",663 "lines": 11,664 "truncated": false,665 "block": 2,666 "row": 78667 },668 {669 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBspline.snip.cpp",670 "sha256": "b553d5867f64e4f1ed70b79cb1a9b12c42307a632b7ab78694e07b796eedc6e1",671 "language": "C++",672 "lines": 13,673 "truncated": false,674 "block": 2,675 "row": 79676 },677 {678 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/fastBSpline.m",679 "sha256": "9a05cdd028e5d926897c40c40e5a00bee0e9e28bb5e39dde420977be1780e914",680 "language": "MATLAB",681 "lines": 304,682 "truncated": false,683 "block": 2,684 "row": 1541685 },686 {687 "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/mexmetypecheck.cpp",688 "sha256": "08958d0b51e21dadc179f7c3d75b53638f5676e7726b1a35ba204532da889a1b",689 "language": "C++",690 "lines": 46,691 "truncated": false,692 "block": 2,693 "row": 113694 },695 {696 "path": "common/Motion Correction Files/lucas-kanade/fftalign.m",697 "sha256": "8101a4bb30e119e2a89b45716016d280cec6310aa45b4a54ad6c93a95df5d696",698 "language": "MATLAB",699 "lines": 17,700 "truncated": false,701 "block": 2,702 "row": 1196703 },704 {705 "path": "common/Motion Correction Files/lucasKanade_affineReg.m",706 "sha256": "fdcb174ceb95c80a0a9f057a0830952f44376ea6b5ea34468098258ae83ab7aa",707 "language": "MATLAB",708 "lines": 195,709 "truncated": false,710 "block": 2,711 "row": 1525712 },713 {714 "path": "common/Motion Correction Files/lucasKanade_plus_nonrigid.m",715 "sha256": "496ebe80981be8387915a8e65eff4c0315da17652f3904e769ea901cae3655e7",716 "language": "MATLAB",717 "lines": 271,718 "truncated": false,719 "block": 2,720 "row": 1539721 },722 {723 "path": "common/Motion Correction Files/lucasKanade_plus_nonrigid_memMap.m",724 "sha256": "01ba276beb09cb4750124f9730655877cd8bb41537f8740153dfc0c8847784a1",725 "language": "MATLAB",726 "lines": 301,727 "truncated": false,728 "block": 2,729 "row": 1546730 },731 {732 "path": "common/Motion Correction Files/parseScanimageTiff.m",733 "sha256": "4a788f93b8e3c87cfb71963595e00c08383e25c7aab43ee0bb4ca74c44259062",734 "language": "MATLAB",735 "lines": 62,736 "truncated": false,737 "block": 2,738 "row": 1379739 },740 {741 "path": "common/Motion Correction Files/scriptTestAddingDisplacementFields.m",742 "sha256": "fc298e59c84286853b54fd4575a8ab718f3bdad3ebecd769c8f13ad7823fc26f",743 "language": "MATLAB",744 "lines": 60,745 "truncated": false,746 "block": 2,747 "row": 1289748 },749 {750 "path": "common/Motion Correction Files/scriptTestMotionCorrectionFunction.m",751 "sha256": "186da57b81e360aa714cbf789312ff406f78170d68cd62fa38bdfe6f45d823f6",752 "language": "MATLAB",753 "lines": 57,754 "truncated": false,755 "block": 2,756 "row": 1294757 },758 {759 "path": "common/Motion Correction Files/track_subpixel_wholeframe_motion_fft_forloop.m",760 "sha256": "60413e21ef847c473c90e6abb7655ae6b7bb5005fc7a41ec6ab777ed8dc64c5b",761 "language": "MATLAB",762 "lines": 203,763 "truncated": false,764 "block": 2,765 "row": 1500766 },767 {768 "path": "common/Motion Correction Files/translateAcq.m",769 "sha256": "762729f6692d6a30b005969012fe26fc19dea8370d914ca4996d33c7d42fe61b",770 "language": "MATLAB",771 "lines": 22,772 "truncated": false,773 "block": 2,774 "row": 1201775 },776 {777 "path": "common/Motion Correction Files/withinFile_fullFrame_fft.m",778 "sha256": "b8ce55fe34b1a807efe05c25eec6313ec9fe94175a11e918a36235a8a0beeba6",779 "language": "MATLAB",780 "lines": 44,781 "truncated": false,782 "block": 2,783 "row": 1330784 },785 {786 "path": "common/Motion Correction Files/withinFile_segmentConsensus.m",787 "sha256": "fa5ee13cdfcea2dc7c4b0232db588e6a06b8099c42b950853950473301efcb85",788 "language": "MATLAB",789 "lines": 68,790 "truncated": false,791 "block": 2,792 "row": 1388793 },794 {795 "path": "common/Motion Correction Files/withinFile_withinFrame_lucasKanade.m",796 "sha256": "8a66bab7b352bfadc5b50ccacc3ebc95c4592e47fa4a50ae6a0b484424947002",797 "language": "MATLAB",798 "lines": 217,799 "truncated": false,800 "block": 2,801 "row": 1529802 },803 {804 "path": "common/SC2Pinit.m",805 "sha256": "6187fcc628abad0af98525c8cdf845cb41c571c97177bdb797b65b0706af73f3",806 "language": "MATLAB",807 "lines": 41,808 "truncated": false,809 "block": 2,810 "row": 1287811 },812 {813 "path": "common/calcActivityOverviewImg.m",814 "sha256": "53406505e677ba9fc9d04d3953f5ec0b6d43905d842657811c8e24717100de0f",815 "language": "MATLAB",816 "lines": 43,817 "truncated": false,818 "block": 2,819 "row": 1297820 },821 {822 "path": "common/diag2full.m",823 "sha256": "04f4b7d15dc1bc32eeeba31b06399e32b8055b2a141f5a561c11e3ef276f6709",824 "language": "MATLAB",825 "lines": 15,826 "truncated": false,827 "block": 2,828 "row": 1174829 },830 {831 "path": "common/playMov.m",832 "sha256": "9773858d2fc1282e4ed95bd1a41aed56900fb00cfbf33fc7bf239ce633079703",833 "language": "MATLAB",834 "lines": 108,835 "truncated": false,836 "block": 2,837 "row": 1400838 },839 {840 "path": "common/updateOldAcq/addMovieSizes.m",841 "sha256": "85de2bab0e0dbcd9488477250e681cabb015decde6508f66893fac405529398e",842 "language": "MATLAB",843 "lines": 43,844 "truncated": false,845 "block": 2,846 "row": 1283847 },848 {849 "path": "common/updateOldAcq/removeRoiList.m",850 "sha256": "631a3ab28aa42a1354761e7b909fbda17ed9016156657a608294ae9ce9716a4d",851 "language": "MATLAB",852 "lines": 22,853 "truncated": false,854 "block": 2,855 "row": 1221856 },857 {858 "path": "personal/Ari/addSIMetaData.m",859 "sha256": "83d9346c852ac5420ef549fe2778b1ffaff2fcc56f551d04c7e2d6de0d64376f",860 "language": "MATLAB",861 "lines": 85,862 "truncated": false,863 "block": 2,864 "row": 1363865 },866 {867 "path": "personal/Ari/am2PInit.m",868 "sha256": "55f2699a7c1b44bd974a87074c581003ec07f7d1c73fb073a4213e2319af3d52",869 "language": "MATLAB",870 "lines": 163,871 "truncated": false,872 "block": 2,873 "row": 1449874 },875 {876 "path": "personal/Ari/changeAcqPathToLocal.m",877 "sha256": "89d37c4dea51d50c3191ee4e08b693146b9053eb84585bc3dfc4b00f884f454c",878 "language": "MATLAB",879 "lines": 59,880 "truncated": false,881 "block": 2,882 "row": 1319883 },884 {885 "path": "personal/Ari/copyLocalAcqToServer.m",886 "sha256": "3a4d4969c69285c8f4a182adac94b7c27031a8541f82d12662f040e7769efdde",887 "language": "MATLAB",888 "lines": 76,889 "truncated": false,890 "block": 2,891 "row": 1358892 },893 {894 "path": "personal/Ari/createAcquisitionObjects.m",895 "sha256": "62614de6358d018708cd3da126288588b9219ffc391293f1d13e51656096472b",896 "language": "MATLAB",897 "lines": 145,898 "truncated": false,899 "block": 2,900 "row": 1453901 },902 {903 "path": "personal/Ari/nameFiles2PAM.m",904 "sha256": "e9864d04f6cca85a51a0edf6ab520dfb7d4d597003d3ab342c66cdd800592687",905 "language": "MATLAB",906 "lines": 14,907 "truncated": false,908 "block": 2,909 "row": 1176910 },911 {912 "path": "personal/Caroline/CAR2Pinit.m",913 "sha256": "174247199f2127aadc21ef9a3e54fd923bbb7256ec88347bda2ac7a05ba98f83",914 "language": "MATLAB",915 "lines": 43,916 "truncated": false,917 "block": 2,918 "row": 1295919 },920 {921 "path": "personal/Laura/getOverviewImg_lnd.m",922 "sha256": "af432298da0e64d67ce3ef559a933871ecb7cf30e84bb68f3678bd6e3003a5de",923 "language": "MATLAB",924 "lines": 11,925 "truncated": false,926 "block": 2,927 "row": 1177928 },929 {930 "path": "personal/Laura/lnd_init.m",931 "sha256": "7a9308e65854383dbd88d60812923f410a46d299395126f52498999e283638bb",932 "language": "MATLAB",933 "lines": 43,934 "truncated": false,935 "block": 2,936 "row": 1271937 },938 {939 "path": "personal/Laura/lnd_init_green.m",940 "sha256": "e768f8d87059eca0fa51264aeec5be978d9892a96da5612b92072a762fd9e27b",941 "language": "MATLAB",942 "lines": 42,943 "truncated": false,944 "block": 2,945 "row": 1272946 },947 {948 "path": "personal/Laura/lnd_outer_allMouse.m",949 "sha256": "2f2f3a58897e12430c805c76f689456f55dfab3312a036d5736b9cf1750f7d11",950 "language": "MATLAB",951 "lines": 26,952 "truncated": false,953 "block": 2,954 "row": 1223955 },956 {957 "path": "personal/Laura/lnd_outer_allMouse_addSlices.m",958 "sha256": "3d7fa9fd27c324b9c6a9ff9b465901b2623e4d7aba26ac4f644526610ef69b11",959 "language": "MATLAB",960 "lines": 28,961 "truncated": false,962 "block": 2,963 "row": 1219964 },965 {966 "path": "personal/Laura/lnd_outer_allMouse_postMoCor.m",967 "sha256": "2ffcd9754bcc1f4ae3bd82a05f2d188b2c2b37e2af1b0d0921fe0917d90d8f75",968 "language": "MATLAB",969 "lines": 27,970 "truncated": false,971 "block": 2,972 "row": 1231973 },974 {975 "path": "personal/Laura/move_files.m",976 "sha256": "a0aee08ae67b8037d4b821dc46aa6cd6008f7944861300df96a1111c266c1ab6",977 "language": "MATLAB",978 "lines": 13,979 "truncated": false,980 "block": 2,981 "row": 1206982 },983 {984 "path": "personal/Laura/overlayROIs.m",985 "sha256": "3945ffd33a40500b45e7b213b0e5abaaca7eefdb9bc24be098d755cac6b2def8",986 "language": "MATLAB",987 "lines": 11,988 "truncated": false,989 "block": 2,990 "row": 1166991 },992 {993 "path": "personal/Laura/save_taryn.m",994 "sha256": "e8a4aec90a3e7b038bf10746851c99e33351942907dc0f7cc47f3d9c2bf39be3",995 "language": "MATLAB",996 "lines": 3,997 "truncated": false,998 "block": 2,999 "row": 11701000 },1001 {1002 "path": "personal/Matthias/MJLM_MJLMselectROIs.m",1003 "sha256": "67825836cae915a1ce080b08228c29b86b3393a2dde3390765cd1fad138b541a",1004 "language": "MATLAB",1005 "lines": 799,1006 "truncated": false,1007 "block": 2,1008 "row": 15611009 },1010 {1011 "path": "personal/Matthias/MJLMselectROIs.m",1012 "sha256": "62d0d8ff402d38a7c69d68929090ef2e99870d9e1bc754e42b9082fe09a06ac1",1013 "language": "MATLAB",1014 "lines": 1059,1015 "truncated": false,1016 "block": 2,1017 "row": 15621018 },1019 {1020 "path": "personal/Matthias/acq2tempDir.m",1021 "sha256": "3c397a1909cf8da2804b855f8511b1a6d230ace75e60466fe306b5155898a0bd",1022 "language": "MATLAB",1023 "lines": 39,1024 "truncated": false,1025 "block": 2,1026 "row": 12911027 },1028 {1029 "path": "personal/Matthias/applyManualLineshiftToFiles.m",1030 "sha256": "8b73acb5f65fc51b38ff1003913e9f89a94cc5e91070408e2af786ddcfa9c753",1031 "language": "MATLAB",1032 "lines": 13,1033 "truncated": false,1034 "block": 2,1035 "row": 11881036 },1037 {1038 "path": "personal/Matthias/changeDir.m",1039 "sha256": "6ab2bd7c01cc11e8e3b2bd385c9097d2651c9c703700cdb30d97b7e5bccdd7d7",1040 "language": "MATLAB",1041 "lines": 12,1042 "truncated": false,1043 "block": 2,1044 "row": 11711045 },1046 {1047 "path": "personal/Matthias/extractROIsBinWithEdgeSubtraction.m",1048 "sha256": "e872c39ffda90d24cfb16cb6d72b564dadb9dd8878fc22e37e91edb4cc9299f2",1049 "language": "MATLAB",1050 "lines": 106,1051 "truncated": false,1052 "block": 2,1053 "row": 14091054 },1055 {1056 "path": "personal/Matthias/getBaseline_ransac_demo.m",1057 "sha256": "a26eac50dbf9eee7617d8d8b5148a18fc3390394e03efcc6260b486208ea995f",1058 "language": "MATLAB",1059 "lines": 217,1060 "truncated": false,1061 "block": 2,1062 "row": 14731063 },1064 {1065 "path": "personal/Matthias/getDiags.m",1066 "sha256": "f26f25ede7eb9cc8318d6e8b85ce67583fdc4bd14cb7645006e98b8267ff7c1f",1067 "language": "MATLAB",1068 "lines": 7,1069 "truncated": false,1070 "block": 2,1071 "row": 11651072 },1073 {1074 "path": "personal/Matthias/getEdgeTrace.m",1075 "sha256": "8d1990e3282a0ee87a33cb792635a429e2bbfcafd6543dc533c8cf6ed63d0f64",1076 "language": "MATLAB",1077 "lines": 28,1078 "truncated": false,1079 "block": 2,1080 "row": 12381081 },1082 {1083 "path": "personal/Matthias/getOverviewImg.m",1084 "sha256": "ae3b664f2fb7c595357d158da5589a44874e6f9aeb2745966dc3473b7d8045e1",1085 "language": "MATLAB",1086 "lines": 35,1087 "truncated": false,1088 "block": 2,1089 "row": 12291090 },1091 {1092 "path": "personal/Matthias/getRoiMovie.m",1093 "sha256": "8a9545e5db3fd96914d5279c723c8b78da3559032103f36a0f3009f187bc5dbd",1094 "language": "MATLAB",1095 "lines": 31,1096 "truncated": false,1097 "block": 2,1098 "row": 12351099 },1100 {1101 "path": "personal/Matthias/mjlmInitialization.m",1102 "sha256": "2ba064454116eecd5f78cd5058275292aa6ae63d131a796dfabccc719b2b6937",1103 "language": "MATLAB",1104 "lines": 111,1105 "truncated": false,1106 "block": 2,1107 "row": 14201108 },1109 {1110 "path": "personal/Matthias/mmCovMat.m",1111 "sha256": "1182b1ca456cf9db6e80fe45f7fe06bc1ada0dc89e39b0c36bdc792f45376fd9",1112 "language": "MATLAB",1113 "lines": 65,1114 "truncated": false,1115 "block": 2,1116 "row": 13111117 },1118 {1119 "path": "personal/Matthias/mmPixCov.m",1120 "sha256": "5068015dec1c2a85383e2f1e2f2d223282eb7a61ebd17e2b519c69e7b17a1f01",1121 "language": "MATLAB",1122 "lines": 41,1123 "truncated": false,1124 "block": 2,1125 "row": 12701126 },1127 {1128 "path": "personal/Matthias/nearestSPD.m",1129 "sha256": "06eb75b3663e179ddb2cf653c9be778fb41d1672a3b8972995dfc373b176d40e",1130 "language": "MATLAB",1131 "lines": 65,1132 "truncated": false,1133 "block": 2,1134 "row": 12991135 },1136 {1137 "path": "personal/Matthias/renameChangeNameOfFilesInFolder.m",1138 "sha256": "e6014211e4a674f69878e8def8f679e3b32579cd15d0d542bc57ee48e5bd5e92",1139 "language": "MATLAB",1140 "lines": 18,1141 "truncated": false,1142 "block": 2,1143 "row": 12031144 },1145 {1146 "path": "personal/Matthias/runningPrctile/runningPrctile.m",1147 "sha256": "4b9a7a7a8ea546c24b1a6fee4dda60949400db6be1fb4a61583b2ff76133a611",1148 "language": "MATLAB",1149 "lines": 15,1150 "truncated": false,1151 "block": 2,1152 "row": 12071153 },1154 {1155 "path": "personal/Matthias/runningPrctile/runningPrctileMat.m",1156 "sha256": "42e73f504a1dc9125d48664714c51801af9b6decc3b16a443f212c83cea33912",1157 "language": "MATLAB",1158 "lines": 28,1159 "truncated": false,1160 "block": 2,1161 "row": 12241162 },1163 {1164 "path": "personal/Matthias/runningPrctile/runningPrctileMex.cpp",1165 "sha256": "463b286732c2111682adb5a8a96d8bab0108d1749ce2a166b749a9ac167222a4",1166 "language": "C++",1167 "lines": 84,1168 "truncated": false,1169 "block": 2,1170 "row": 1711171 },1172 {1173 "path": "personal/Matthias/scriptBatchInitializeSessions.m",1174 "sha256": "2685423cd67bba76b5d7d0c4a518caa3f8b2f372817f0567d27ac88f73c7bfe6",1175 "language": "MATLAB",1176 "lines": 29,1177 "truncated": false,1178 "block": 2,1179 "row": 12341180 },1181 {1182 "path": "personal/Selmaan/AJlk.m",1183 "sha256": "2ca7341f75b3a45779c2c66a4149ecf82685003fe88d34b8f55d1cebd588d670",1184 "language": "MATLAB",1185 "lines": 36,1186 "truncated": false,1187 "block": 2,1188 "row": 12661189 },1190 {1191 "path": "personal/Selmaan/SClk.m",1192 "sha256": "914030adc1e9bb39f77065743a50e854efbe443eb75abc329b1ab8d20c35b3fb",1193 "language": "MATLAB",1194 "lines": 42,1195 "truncated": false,1196 "block": 2,1197 "row": 12931198 },1199 {1200 "path": "personal/Selmaan/SCsc.m",