Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__ml-bioinfo-ceitec__hybridetector.json264 linesDownload Raw Back to 41
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/ml-bioinfo-ceitec/hybridetector",4 "url": "https://github.com/ML-Bioinfo-CEITEC/HybriDetector",5 "host": "github.com",6 "commit": "3c104d9358e0f06dcc2511f63355c4a5d801e921",7 "license": "Apache-2.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "HybriDetector.py",13   "sha256": "10fe4cd7b1b917d65eaf66c488d4abea12d1c05d11626adb87432dec77e8582e",14   "language": "Python",15   "lines": 84,16   "truncated": false,17   "block": 20,18   "row": 1786319  },20  {21   "path": "LICENSE",22   "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4",23   "language": "License",24   "lines": 201,25   "truncated": false,26   "block": 1,27   "row": 221628  },29  {30   "path": "ML/Additional_scripts/align_seed.py",31   "sha256": "573ec09df7c98503fc4a0ee8c2ec560dfbdca07ea06eb12456f623ba7a0b8ce0",32   "language": "Python",33   "lines": 102,34   "truncated": false,35   "block": 20,36   "row": 1770837  },38  {39   "path": "ML/Additional_scripts/targetnet_evaluation.py",40   "sha256": "143f1465ede29f09c3e2ec7f62c4381ee88ac9140d5fb1c273a4866a9b8340b1",41   "language": "Python",42   "lines": 134,43   "truncated": false,44   "block": 20,45   "row": 1841846  },47  {48   "path": "ML/Additional_scripts/training.ipynb",49   "sha256": "4b30e6ebc64dc0656b5a00ec16d09b37b336d1619f31693c1c4badbc57b92c5b",50   "language": "Jupyter",51   "lines": 176,52   "truncated": false,53   "block": 20,54   "row": 795155  },56  {57   "path": "ML/Webpage/script.js",58   "sha256": "a83ca0f32f03e944c1f730945a9b26b882ee6cfa68b1700c55a79730265c8e30",59   "language": "JavaScript",60   "lines": 143,61   "truncated": false,62   "block": 20,63   "row": 655864  },65  {66   "path": "ML/predict.py",67   "sha256": "eb4c2ac64bd22b6e13d4978ef2eb133981aeb919774beee86c1954b0892f44a3",68   "language": "Python",69   "lines": 105,70   "truncated": false,71   "block": 20,72   "row": 1728373  },74  {75   "path": "README.md",76   "sha256": "240550040d9bef1f296d6ff6fb3e779ee6a1344279da5bd27ea5d0ba6f95bbc3",77   "language": "Text",78   "lines": 171,79   "truncated": false,80   "block": 21,81   "row": 325882  },83  {84   "path": "wraps/STAR_gen_index/script.py",85   "sha256": "23366c5e4d617add3b9d510814c81e92a1d8e6e0882b57df91f4597894e3fea2",86   "language": "Python",87   "lines": 47,88   "truncated": false,89   "block": 20,90   "row": 1530891  },92  {93   "path": "wraps/alignment/script.py",94   "sha256": "73f7070daa5f8e1301fcefed628a9733574846c41569045a8eec32d7f5da472c",95   "language": "Python",96   "lines": 62,97   "truncated": false,98   "block": 20,99   "row": 16147100  },101  {102   "path": "wraps/alignment_small/script.py",103   "sha256": "d8a35bfc9a830ed83008668e0ba722ed2e83085864618732193c2f918af7839a",104   "language": "Python",105   "lines": 91,106   "truncated": false,107   "block": 20,108   "row": 17623109  },110  {111   "path": "wraps/alignment_softclip/script.py",112   "sha256": "42f934a75d29e24fa112d7abfbffc2515e15c87f6cfa8fca478766904058e108",113   "language": "Python",114   "lines": 55,115   "truncated": false,116   "block": 20,117   "row": 16049118  },119  {120   "path": "wraps/deduplicate_single_genomic/script.py",121   "sha256": "b0ec2090829370553110c0263315886a00dfad0406f9f9d6ebac3c6ea896dbf5",122   "language": "Python",123   "lines": 76,124   "truncated": false,125   "block": 20,126   "row": 16788127  },128  {129   "path": "wraps/disambiguate_and_filter/sam_disambiguate.pl",130   "sha256": "8ff0540a747e98ed7dd6e1e5b6950e73bd95c0fdd4084c3b7ecf4d0128e992b3",131   "language": "Perl",132   "lines": 320,133   "truncated": false,134   "block": 20,135   "row": 12191136  },137  {138   "path": "wraps/disambiguate_and_filter/script.py",139   "sha256": "4d9f0cfb6576c9e807e28ae75aabcaf5832b7dfb45f24d0ebd64b92f70d925c0",140   "language": "Python",141   "lines": 54,142   "truncated": false,143   "block": 20,144   "row": 16013145  },146  {147   "path": "wraps/fastqc/script.py",148   "sha256": "3d85a5a24337e9b6ee0c9a53fe0cb772b3f365f176aee40102a37ba3cc4490c4",149   "language": "Python",150   "lines": 33,151   "truncated": false,152   "block": 20,153   "row": 14103154  },155  {156   "path": "wraps/filter_and_collapse/filter_and_collapse.R",157   "sha256": "4d61ac4081c4c121e4f28a4351cef5424ae7f7e4e1eaddfa4f549dc7ac8dc216",158   "language": "R",159   "lines": 516,160   "truncated": false,161   "block": 21,162   "row": 1557163  },164  {165   "path": "wraps/filter_and_collapse/script.py",166   "sha256": "42aec17940ca5e2d9a12491deb7724d5134f366aa8430d294bc1e3b4a5a95372",167   "language": "Python",168   "lines": 29,169   "truncated": false,170   "block": 20,171   "row": 14612172  },173  {174   "path": "wraps/filter_single_genomic/script.py",175   "sha256": "d7a8d463bfe4447a98cbbb80ecb53941265dfe222a6190479335cfdc456d64ed",176   "language": "Python",177   "lines": 99,178   "truncated": false,179   "block": 20,180   "row": 17748181  },182  {183   "path": "wraps/get_pairs/get_pairs.R",184   "sha256": "9c38582987882886f42651ff66efc820a49d88c01021ae8ce76ab9c5aa8749f2",185   "language": "R",186   "lines": 322,187   "truncated": false,188   "block": 21,189   "row": 1403190  },191  {192   "path": "wraps/get_pairs/script.py",193   "sha256": "265386e1c51448eee7275d52b7b4e64ef697333cd5b808197b2088197c908905",194   "language": "Python",195   "lines": 28,196   "truncated": false,197   "block": 20,198   "row": 14472199  },200  {201   "path": "wraps/merge_replicates/merge_replicates.R",202   "sha256": "644c6ec6d9d823835364ab37abbe4f3a9fe1004732129665de4a14149be01419",203   "language": "R",204   "lines": 393,205   "truncated": false,206   "block": 21,207   "row": 1517208  },209  {210   "path": "wraps/merge_replicates/script.py",211   "sha256": "ce5184b743fa5d6e3340c22f974de146ef70e8114d0b7b58f1c690387f509b20",212   "language": "Python",213   "lines": 27,214   "truncated": false,215   "block": 20,216   "row": 14194217  },218  {219   "path": "wraps/modify_bedgraph/modify_bed.R",220   "sha256": "bdde3ee661fc262a2cbce98600982afb24f0667d488314d57794a0c10f20de05",221   "language": "R",222   "lines": 29,223   "truncated": false,224   "block": 21,225   "row": 636226  },227  {228   "path": "wraps/modify_bedgraph/script.py",229   "sha256": "3a68b3fed47f065d20b6b222678f8793c24edbe675b9ff4e2326463cf1d2426c",230   "language": "Python",231   "lines": 20,232   "truncated": false,233   "block": 20,234   "row": 13646235  },236  {237   "path": "wraps/prepare_ref/script.py",238   "sha256": "bdf6b4a3e0c2c21e1f7bed41a4b03424087665bd4feafda11375db40a9c4a705",239   "language": "Python",240   "lines": 36,241   "truncated": false,242   "block": 20,243   "row": 14286244  },245  {246   "path": "wraps/unify_length/script.py",247   "sha256": "1c8ff41cff6a4f9071042036f2eb4a157e5fee707a8953fba18207e20931850a",248   "language": "Python",249   "lines": 29,250   "truncated": false,251   "block": 20,252   "row": 14410253  },254  {255   "path": "wraps/unify_length/unify_length.R",256   "sha256": "be00f20e06bdd0ace946933ddcbb025a79004ea01b8822bf292b8f44bbadb77d",257   "language": "R",258   "lines": 208,259   "truncated": false,260   "block": 21,261   "row": 1396262  }263 ]264}