Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__thinhump__kggraph.json480 linesDownload Raw Back to 45
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/thinhump/kggraph",4 "url": "https://github.com/ThinhUMP/KGGraph",5 "host": "github.com",6 "commit": "48c6b20d3f1b263e1ccfbc10e2564226daed236f",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "Docs/Notebooks/get_conta_pretrain.ipynb",13   "sha256": "0a6b91c28275f443ecbee1cbc35f5a7c3d6be1a037703501c348857b1cf6a04a",14   "language": "Jupyter",15   "lines": 76,16   "truncated": false,17   "block": 17,18   "row": 562419  },20  {21   "path": "Docs/scripts/fgs.py",22   "sha256": "3e23c071912ab87899d9bf92b9d2aa08c7bdd94d158cfc8c2681b9a8a8390478",23   "language": "Python",24   "lines": 276,25   "truncated": false,26   "block": 17,27   "row": 3246828  },29  {30   "path": "Docs/scripts/knn.py",31   "sha256": "80c91e416670fde2d07b8ddc603c0bd68ebb8b5283fcef66b124af6769cbcf76",32   "language": "Python",33   "lines": 307,34   "truncated": false,35   "block": 17,36   "row": 3201337  },38  {39   "path": "Docs/scripts/tsne.py",40   "sha256": "1ce5aa4fb6fa1481e67767594bb936d2c9bd4346791da260d1e169deaf0c7a8e",41   "language": "Python",42   "lines": 256,43   "truncated": false,44   "block": 17,45   "row": 3075146  },47  {48   "path": "KGGraph/KGGChem/atom_features.py",49   "sha256": "6c8156d38aa66853dfa115ec02d91b1cd4ce673ffb729377765a93d44d67eb82",50   "language": "Python",51   "lines": 264,52   "truncated": false,53   "block": 17,54   "row": 3034855  },56  {57   "path": "KGGraph/KGGChem/atom_utils.py",58   "sha256": "33f4282c4d67918ddfde795c1d4f317d8f2eea5c6047e74f829996e08ed49d6b",59   "language": "Python",60   "lines": 99,61   "truncated": false,62   "block": 17,63   "row": 2522364  },65  {66   "path": "KGGraph/KGGChem/bond_features.py",67   "sha256": "3553c329079143b8e5094e646fe761bb5304b208b47f13eca06109547bbb41a1",68   "language": "Python",69   "lines": 75,70   "truncated": false,71   "block": 17,72   "row": 2379773  },74  {75   "path": "KGGraph/KGGChem/bond_utils.py",76   "sha256": "e1f54954c8c8a5073b4a27fcec4165982f4d5c56db732ab6840487f859db40c8",77   "language": "Python",78   "lines": 11,79   "truncated": false,80   "block": 17,81   "row": 1852282  },83  {84   "path": "KGGraph/KGGChem/chemutils.py",85   "sha256": "060a08ad054eb601ed5054b0d254549c8616f6e112047a8025b793279de0dc73",86   "language": "Python",87   "lines": 177,88   "truncated": false,89   "block": 17,90   "row": 2940991  },92  {93   "path": "KGGraph/KGGChem/conformer_charge_compute.py",94   "sha256": "a431a8891c5193df6079e2bb414dbc332a32ea7c77e959df3087e4b325b055c0",95   "language": "Python",96   "lines": 309,97   "truncated": false,98   "block": 18,99   "row": 1277100  },101  {102   "path": "KGGraph/KGGChem/gasteiger_adj.py",103   "sha256": "368d06460e8e4a872d49bd481794c2d52e3c931c9f9c66afd8c1a3203ea0852d",104   "language": "Python",105   "lines": 153,106   "truncated": false,107   "block": 17,108   "row": 28815109  },110  {111   "path": "KGGraph/KGGChem/hybridization.py",112   "sha256": "6ddb278784310903c1efc483aed2f10153f445c2f8db0ca24b8a3cf2dfad117e",113   "language": "Python",114   "lines": 147,115   "truncated": false,116   "block": 17,117   "row": 29927118  },119  {120   "path": "KGGraph/KGGChem/standardize.py",121   "sha256": "6c73d29e26681e04f7adde07dfe561e8872e2bb42d0d4653008e61f4439921b6",122   "language": "Python",123   "lines": 38,124   "truncated": false,125   "block": 17,126   "row": 21147127  },128  {129   "path": "KGGraph/KGGDecode/decoder.py",130   "sha256": "6010593b1cd45b09ffa3ccbb264027b04694503fbf3baf1761330a0cf068495f",131   "language": "Python",132   "lines": 278,133   "truncated": false,134   "block": 18,135   "row": 375136  },137  {138   "path": "KGGraph/KGGDecompose/brics_decompose.py",139   "sha256": "8af696ce6e5dcdc2f8e3b5e6c6465f69cf93f6e4c108339d01d9426da34d01f1",140   "language": "Python",141   "lines": 180,142   "truncated": false,143   "block": 17,144   "row": 30116145  },146  {147   "path": "KGGraph/KGGDecompose/jin_decompose.py",148   "sha256": "ec22fbfe0db4cac656dbff4b3b2a4ac1d47af9b6c7fecd803d482f2aa00166f4",149   "language": "Python",150   "lines": 190,151   "truncated": false,152   "block": 17,153   "row": 30298154  },155  {156   "path": "KGGraph/KGGDecompose/jt_construct.py",157   "sha256": "1fe1c47577816edb04b172b390242b70665be40e0058483537962e47937480ba",158   "language": "Python",159   "lines": 192,160   "truncated": false,161   "block": 17,162   "row": 30841163  },164  {165   "path": "KGGraph/KGGDecompose/jt_vis.py",166   "sha256": "73c881f7e62c31d6c4471fbbcbc9ebec4f3d60251e14b911f2705d0a2c2631f7",167   "language": "Python",168   "lines": 147,169   "truncated": false,170   "block": 17,171   "row": 28047172  },173  {174   "path": "KGGraph/KGGDecompose/motif_decompose.py",175   "sha256": "75ca40d020fa9323958e1639701f03d507682144d83a864f8b7dbbce2a5215ac",176   "language": "Python",177   "lines": 328,178   "truncated": false,179   "block": 18,180   "row": 391181  },182  {183   "path": "KGGraph/KGGDecompose/smotif_decompose.py",184   "sha256": "09e638e09a5ac834046ffcbaf104262b4ae871a8c6edc7905821808a4e7f7d7d",185   "language": "Python",186   "lines": 323,187   "truncated": false,188   "block": 18,189   "row": 694190  },191  {192   "path": "KGGraph/KGGDecompose/smotif_decompose_an.py",193   "sha256": "0055a5cd720e2c200a307453a1231a96d88e10fa769479d7e7d95cabb1fae00f",194   "language": "Python",195   "lines": 320,196   "truncated": false,197   "block": 18,198   "row": 714199  },200  {201   "path": "KGGraph/KGGDecompose/tmotif_decompose.py",202   "sha256": "fef98ad54bfdcb8c1cba2916f48123bc748837bb4c0a07ea52413e44f72bd92a",203   "language": "Python",204   "lines": 318,205   "truncated": false,206   "block": 18,207   "row": 312208  },209  {210   "path": "KGGraph/KGGEncode/edge_feature.py",211   "sha256": "1d994a6da8b90d6b7ad797853fa71a0d621475284dc4e599154638e9378629a8",212   "language": "Python",213   "lines": 409,214   "truncated": false,215   "block": 18,216   "row": 2195217  },218  {219   "path": "KGGraph/KGGEncode/x_feature.py",220   "sha256": "7d0d1311007c6bbc79b6c6f411643811a6d98efa3f7c679fe0d1092159899ff6",221   "language": "Python",222   "lines": 219,223   "truncated": false,224   "block": 17,225   "row": 30593226  },227  {228   "path": "KGGraph/KGGModel/crawl_metrics.py",229   "sha256": "9548d5ffb9e786761403a6e96933754523930a1618bca1430b19105619c47b7d",230   "language": "Python",231   "lines": 240,232   "truncated": false,233   "block": 17,234   "row": 31569235  },236  {237   "path": "KGGraph/KGGModel/finetune_utils.py",238   "sha256": "c55bc78451245d11006b376620030878f06e9edb41d9e6a01ccfa55d759a7f5e",239   "language": "Python",240   "lines": 575,241   "truncated": false,242   "block": 18,243   "row": 2906244  },245  {246   "path": "KGGraph/KGGModel/graph_model.py",247   "sha256": "700991bca7d71699d7c2bcd8af330f78570f5ab41e15a4863b4d96611c68467b",248   "language": "Python",249   "lines": 602,250   "truncated": false,251   "block": 18,252   "row": 3638253  },254  {255   "path": "KGGraph/KGGModel/pretrain_utils.py",256   "sha256": "17307a2c395a03219644a37e10ead7d4dc2f3ab83a8a84283ca3a0d47e9fcf35",257   "language": "Python",258   "lines": 78,259   "truncated": false,260   "block": 17,261   "row": 23808262  },263  {264   "path": "KGGraph/KGGModel/visualize.py",265   "sha256": "4b642c3bf706e5b5c4dfa817aac04e4362c68b42ed3064127a745375feef6ac3",266   "language": "Python",267   "lines": 335,268   "truncated": false,269   "block": 18,270   "row": 464271  },272  {273   "path": "KGGraph/KGGProcessor/finetune_dataset.py",274   "sha256": "a0d19f71e05ccf7d88a424b82534b6d0078b98ccd2a1314cb6101bd02866dbb0",275   "language": "Python",276   "lines": 252,277   "truncated": false,278   "block": 17,279   "row": 31712280  },281  {282   "path": "KGGraph/KGGProcessor/loader.py",283   "sha256": "60458b140ee77274b8d34a7b067fafbb7d44b9abe2ba131e715f1ce50f1956f7",284   "language": "Python",285   "lines": 375,286   "truncated": false,287   "block": 18,288   "row": 749289  },290  {291   "path": "KGGraph/KGGProcessor/pretrain_dataset.py",292   "sha256": "b92bc73941705b70860ebd47488ba1c0e13d0cc66cae488ee828eac7db6bae61",293   "language": "Python",294   "lines": 162,295   "truncated": false,296   "block": 17,297   "row": 26967298  },299  {300   "path": "KGGraph/KGGProcessor/split.py",301   "sha256": "b4e33bd02e75950921fb5c3f197e0b97a7da25f2e7cf7e85dbdcab25927e006e",302   "language": "Python",303   "lines": 301,304   "truncated": false,305   "block": 18,306   "row": 1316307  },308  {309   "path": "LICENSE",310   "sha256": "64c646b9f1063b794e80fa1b58329571f95150875ea31ef58ccbc54381d03f75",311   "language": "License",312   "lines": 21,313   "truncated": false,314   "block": 17,315   "row": 7910316  },317  {318   "path": "README.md",319   "sha256": "7a089d21cfacdda2366b8bd03d2ec625db700642f31f20b6b3e94b6a723f3ce9",320   "language": "Text",321   "lines": 126,322   "truncated": false,323   "block": 18,324   "row": 10932325  },326  {327   "path": "Test/KGGChem/test_atom_features.py",328   "sha256": "254b999cd05a001e81496f9a8a0a5fc6cc6179df5382085b82503da81b67adf4",329   "language": "Python",330   "lines": 129,331   "truncated": false,332   "block": 17,333   "row": 27036334  },335  {336   "path": "Test/KGGChem/test_atom_utils.py",337   "sha256": "975d9e0d4ba227759e91a8ebd112968ddf33fc254974c4e51c9c8d903e3274b8",338   "language": "Python",339   "lines": 102,340   "truncated": false,341   "block": 17,342   "row": 25866343  },344  {345   "path": "Test/KGGChem/test_bond_features.py",346   "sha256": "e22197d8257def572912b1a2d013b2dc06434a5dbc73eddba6f55b8c1a612fa6",347   "language": "Python",348   "lines": 78,349   "truncated": false,350   "block": 17,351   "row": 24204352  },353  {354   "path": "Test/KGGChem/test_bond_utils.py",355   "sha256": "660a08ae28365ca275884512eda2b808c0acc20b5244f6ca6ac3103116ccbde0",356   "language": "Python",357   "lines": 30,358   "truncated": false,359   "block": 17,360   "row": 20544361  },362  {363   "path": "Test/KGGChem/test_chemutils.py",364   "sha256": "b83d7f51d75e801c31e3c8ee3d8708c8255997da71ba07dd58679e887e90de67",365   "language": "Python",366   "lines": 32,367   "truncated": false,368   "block": 17,369   "row": 19939370  },371  {372   "path": "Test/KGGChem/test_gasteiger_adj.py",373   "sha256": "291622d3c5216fec7510be8652a00181ce5f02ba88b02dceee2dff0ed9e0767a",374   "language": "Python",375   "lines": 42,376   "truncated": false,377   "block": 17,378   "row": 21925379  },380  {381   "path": "Test/KGGChem/test_hybridization.py",382   "sha256": "0fcaf4179b94c2e66aa3342d613ede90dc051479db20c1a80408d94733373b37",383   "language": "Python",384   "lines": 62,385   "truncated": false,386   "block": 17,387   "row": 23773388  },389  {390   "path": "Test/KGGChem/test_standardize.py",391   "sha256": "ef4260a463cc9e225b1068ceada013e42ca23c001f81af0f56b5e3b5c6b6c0cb",392   "language": "Python",393   "lines": 44,394   "truncated": false,395   "block": 17,396   "row": 21776397  },398  {399   "path": "Test/KGGDecode/test_decoder.py",400   "sha256": "389527beb206f68c74588bd6dae2a865fa191ddda7fbe679f66a9791eaa2429a",401   "language": "Python",402   "lines": 13,403   "truncated": false,404   "block": 17,405   "row": 17744406  },407  {408   "path": "Test/KGGDecompose/test_decompose.py",409   "sha256": "95793fab86ebbacf7092759ee9dfc8c8f8c0e4f2101dc9558acf53aeee0f0c02",410   "language": "Python",411   "lines": 13,412   "truncated": false,413   "block": 17,414   "row": 17731415  },416  {417   "path": "Test/KGGEncode/test_edge_feature.py",418   "sha256": "62e90714766c600fcc66e40afba2296a3d92dcafbf61e71ac99143516b4b5953",419   "language": "Python",420   "lines": 88,421   "truncated": false,422   "block": 17,423   "row": 24979424  },425  {426   "path": "Test/KGGEncode/test_x_feature.py",427   "sha256": "5c67d75c5efc36fe1ab70e508c73abea4baf01190ebb3e37d33679c68e0957fa",428   "language": "Python",429   "lines": 60,430   "truncated": false,431   "block": 17,432   "row": 22417433  },434  {435   "path": "Test/KGGModel/test_model.py",436   "sha256": "37227dd0619758041f93c543819ac0da3e22529952de18e45bce88181058a147",437   "language": "Python",438   "lines": 13,439   "truncated": false,440   "block": 17,441   "row": 17709442  },443  {444   "path": "Test/KGGProcessor/test_processor.py",445   "sha256": "d103d0c044600af728daa9b75f58b34f1affba5c5ff9cf3695a7c3f66ea51294",446   "language": "Python",447   "lines": 13,448   "truncated": false,449   "block": 17,450   "row": 17732451  },452  {453   "path": "finetune.py",454   "sha256": "623a697d8d43791949dea4534de84697bf6d803e57664d6b3acc89c9915c29aa",455   "language": "Python",456   "lines": 369,457   "truncated": false,458   "block": 18,459   "row": 494460  },461  {462   "path": "lint.sh",463   "sha256": "8d76e25a9a5334eaefaf854ccf41eddf6b757243bf5c5ee2d7f6d5636b574034",464   "language": "Shell",465   "lines": 10,466   "truncated": false,467   "block": 18,468   "row": 8816469  },470  {471   "path": "pretrain.py",472   "sha256": "2fc46b7c84558877079e1479a617c1493ce8c6404e5495a335162dcf10e7086d",473   "language": "Python",474   "lines": 246,475   "truncated": false,476   "block": 17,477   "row": 30693478  }479 ]480}