OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/davidcunefare/cnn-cone-detection",4 "url": "https://github.com/DavidCunefare/CNN-Cone-Detection/tree/master/ImagesandResults/Confocal",5 "host": "github.com",6 "commit": "ab01ed7666c8ffdbfc0c12d75366dc460f7e55d2",7 "license": "GPL-2.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "Code/CreateConeIMDB.m",13 "sha256": "15ceede2b9f7ff39e16f61e03e626fe9f646ea1b64a368a384e041a923db72c0",14 "language": "MATLAB",15 "lines": 132,16 "truncated": false,17 "block": 11,18 "row": 2240019 },20 {21 "path": "Code/DisplayMarkedImageExample.m",22 "sha256": "57266fb091733091d07782e6e848e831373c70a2b9cd1347b82bfc9d00a3f744",23 "language": "MATLAB",24 "lines": 43,25 "truncated": false,26 "block": 11,27 "row": 1756028 },29 {30 "path": "Code/FindAllNNdistances.m",31 "sha256": "c86530ed50fdc6a06f3c85dd03b87518758065bdd85e23e73c24ca355848db91",32 "language": "MATLAB",33 "lines": 23,34 "truncated": false,35 "block": 11,36 "row": 1632037 },38 {39 "path": "Code/FindConfocalResults.m",40 "sha256": "53c21111585f5fc1b0b65a17a8c8bdb94aad6766a7f3c24b860d55ba67525c59",41 "language": "MATLAB",42 "lines": 258,43 "truncated": false,44 "block": 12,45 "row": 68646 },47 {48 "path": "Code/FindManualConeMatches.m",49 "sha256": "3f0e5d156aecbdc08775160aee2e32753dc1fc94c45d7b310274a73e257a6d4c",50 "language": "MATLAB",51 "lines": 81,52 "truncated": false,53 "block": 11,54 "row": 2130255 },56 {57 "path": "Code/FindSplitDetectorResults.m",58 "sha256": "36bd59e6441774e886c5700fe96a7c154c7589309dee131da6255088cb4da891",59 "language": "MATLAB",60 "lines": 258,61 "truncated": false,62 "block": 12,63 "row": 69064 },65 {66 "path": "Code/GetConePosSingle.m",67 "sha256": "e9bba4416b9a9b5ea355f3b068f22a79ce0bf39abce220467102aec744ad73b7",68 "language": "MATLAB",69 "lines": 63,70 "truncated": false,71 "block": 11,72 "row": 1996273 },74 {75 "path": "Code/GetRootPath.m",76 "sha256": "9207d5222027f6c03d0213e8b57643d8890272a32484df77afe32d78c4326e40",77 "language": "MATLAB",78 "lines": 8,79 "truncated": false,80 "block": 11,81 "row": 1534782 },83 {84 "path": "Code/OptomizeConeDetectionParameters.m",85 "sha256": "649c80d09885ba0a1cab9c5008972349159fd52d6be66d27bc2a72a62627c751",86 "language": "MATLAB",87 "lines": 131,88 "truncated": false,89 "block": 11,90 "row": 2199891 },92 {93 "path": "Code/ProbabilityMap_ConeLocations.m",94 "sha256": "f9e750f462eb6009a765cedda3ef7f260f9c3c68bbd3e100d87e166f5af88456",95 "language": "MATLAB",96 "lines": 33,97 "truncated": false,98 "block": 11,99 "row": 17401100 },101 {102 "path": "Code/Reassemble_IMDBs.m",103 "sha256": "a9d470079c23653cbddac7882973f2efd4ab042652aaa2c4ab9422b294a97ef2",104 "language": "MATLAB",105 "lines": 37,106 "truncated": false,107 "block": 11,108 "row": 17817109 },110 {111 "path": "Code/RemoveBorderCones_ConeCNN.m",112 "sha256": "46d43db44828359030f215a903593084784d14b01f488a8b4e373bde8a577fbd",113 "language": "MATLAB",114 "lines": 86,115 "truncated": false,116 "block": 11,117 "row": 21605118 },119 {120 "path": "Code/RemoveBorderCones_Density.m",121 "sha256": "5daba89546bf132728c6dc527fa589eb0f22a180a7d269c2aca43d76ca5dfe1d",122 "language": "MATLAB",123 "lines": 29,124 "truncated": false,125 "block": 11,126 "row": 17025127 },128 {129 "path": "Code/RunCNNConeDetection.m",130 "sha256": "bb9e8c5b9c7fb329decf5135a80b8742109ea30d31a69ebc9469f555c6dc5fd7",131 "language": "MATLAB",132 "lines": 56,133 "truncated": false,134 "block": 11,135 "row": 18765136 },137 {138 "path": "Code/RunCNNConeDetection_Combined.m",139 "sha256": "358f9bfbf20909264590a78e9179fea0af35ce198384d759bb39d1d175eccccb",140 "language": "MATLAB",141 "lines": 144,142 "truncated": false,143 "block": 11,144 "row": 22162145 },146 {147 "path": "Code/RunCNNnewSet.m",148 "sha256": "6fcec078586ee0699f918990fea330a21238cfaa2c65e844464a6fedab34c391",149 "language": "MATLAB",150 "lines": 33,151 "truncated": false,152 "block": 11,153 "row": 17221154 },155 {156 "path": "Code/SaveNewSetCones.m",157 "sha256": "c86b18e98a120237c1dd16ff1c1bf446dc39215e75c4b5f63774b895a5a72c83",158 "language": "MATLAB",159 "lines": 61,160 "truncated": false,161 "block": 11,162 "row": 18424163 },164 {165 "path": "Code/SaveProbabilityMaps.m",166 "sha256": "0ef0073f0574a91cb6385faf24376fe59bf26e5903ead6955b5e149c7700cdc4",167 "language": "MATLAB",168 "lines": 160,169 "truncated": false,170 "block": 11,171 "row": 22868172 },173 {174 "path": "Code/SaveValidationCones.m",175 "sha256": "c2766ccbbd61890d0d84a715c918d352a8fde536f6e711a2e34f9f6ad6f22167",176 "language": "MATLAB",177 "lines": 44,178 "truncated": false,179 "block": 11,180 "row": 18221181 },182 {183 "path": "Code/cnn_Cones.m",184 "sha256": "f03ed6ec109f8d57521acee3f3330f62b491cc1dffb0eb67808ff5882846c1d2",185 "language": "MATLAB",186 "lines": 109,187 "truncated": false,188 "block": 11,189 "row": 22135190 },191 {192 "path": "Code/cnn_Cones_init.m",193 "sha256": "d5f72da1ebbfe01f72f4f7b57685cd1b068d9d45be8a19dfce1e33a88417a106",194 "language": "MATLAB",195 "lines": 140,196 "truncated": false,197 "block": 11,198 "row": 23120199 },200 {201 "path": "Code/cnn_train_Cones.m",202 "sha256": "10dbede4f5d8a23c415c5f285d3cab4feeca15bb90a95a18c5cb910698ef0119",203 "language": "MATLAB",204 "lines": 634,205 "truncated": false,206 "block": 12,207 "row": 2082208 },209 {210 "path": "Code/get_parameters_Cone_CNN.m",211 "sha256": "ef011e73e386102b9c40fbf1a210c6d5ae85331d64bbaa058a4edf4aa76a6514",212 "language": "MATLAB",213 "lines": 197,214 "truncated": false,215 "block": 12,216 "row": 585217 },218 {219 "path": "Code/get_parameters_Cone_CNN_Combined.m",220 "sha256": "20bdebce418dbe4ec5c43f2f860e0b32be71a590a0ef5ec9c0f39aded513677e",221 "language": "MATLAB",222 "lines": 217,223 "truncated": false,224 "block": 12,225 "row": 986226 },227 {228 "path": "Code/im2patches.m",229 "sha256": "18a6626bbb301615c98c99f8dd551a2e28d381a80d5373e59f4a14d20aff7b8e",230 "language": "MATLAB",231 "lines": 21,232 "truncated": false,233 "block": 11,234 "row": 16948235 },236 {237 "path": "Code/normalizeValues.m",238 "sha256": "a46543000939225f55711ae59540d5a506df7f28b89633eae4cd0d53684e6e50",239 "language": "MATLAB",240 "lines": 102,241 "truncated": false,242 "block": 11,243 "row": 21075244 },245 {246 "path": "LICENSE",247 "sha256": "db296f2f7f35bca3a174efb0eb392b3b17bd94b341851429a3dff411b1c2fc73",248 "language": "License",249 "lines": 339,250 "truncated": false,251 "block": 3,252 "row": 8157253 },254 {255 "path": "README.md",256 "sha256": "9e680a789e3fea1bdbcd44924607df0fdace6d2a6e3e884a57be9eb4d7535d60",257 "language": "Text",258 "lines": 74,259 "truncated": false,260 "block": 13,261 "row": 6772262 },263 {264 "path": "matconvnet-1.0-beta23/doc/matdoc.py",265 "sha256": "f28f80b8e3ec7abe5b8e29d245125bf6ccb90e844666c0c53a94ff3a2ac9a362",266 "language": "Python",267 "lines": 229,268 "truncated": false,269 "block": 12,270 "row": 15892271 },272 {273 "path": "matconvnet-1.0-beta23/doc/matdocparser.py",274 "sha256": "685f0b47664848cb73596678c1400ec8203e3f539f14edde5a2a46f179d416a8",275 "language": "Python",276 "lines": 366,277 "truncated": false,278 "block": 12,279 "row": 18272280 },281 {282 "path": "matconvnet-1.0-beta23/doc/site/docs/js/mathjaxhelper.js",283 "sha256": "6e7ba4af6373be0df33bcd670eee0d6b9f59fe0ff5544997383fdb2c604fa7e1",284 "language": "JavaScript",285 "lines": 10,286 "truncated": false,287 "block": 11,288 "row": 10969289 },290 {291 "path": "matconvnet-1.0-beta23/doc/site/docs/js/toggle.js",292 "sha256": "c2da9c7da3ff9e748c62941744d11f2dda75d9789e644ba22026c3e01da9335c",293 "language": "JavaScript",294 "lines": 7,295 "truncated": false,296 "block": 11,297 "row": 10981298 },299 {300 "path": "matconvnet-1.0-beta23/doc/site/theme/js/base.js",301 "sha256": "9c50c88a50f3e73070486a04aaad4c48334baa2ae2bd329158a0a4fb5d4f585e",302 "language": "JavaScript",303 "lines": 20,304 "truncated": false,305 "block": 11,306 "row": 11000307 },308 {309 "path": "matconvnet-1.0-beta23/examples/cifar/cnn_cifar.m",310 "sha256": "e6f26b344c209acc3c38a54aae02d8d4cedde157e3cad47b8aa2f728649f76dd",311 "language": "MATLAB",312 "lines": 154,313 "truncated": false,314 "block": 11,315 "row": 22997316 },317 {318 "path": "matconvnet-1.0-beta23/examples/cifar/cnn_cifar_init.m",319 "sha256": "27a3390ded2866e276c17acafe53d3c9969b92fbb01724fad203e4d31189cc48",320 "language": "MATLAB",321 "lines": 88,322 "truncated": false,323 "block": 11,324 "row": 21244325 },326 {327 "path": "matconvnet-1.0-beta23/examples/cifar/cnn_cifar_init_nin.m",328 "sha256": "71dfadff47f12bb05d56b8cda24ba9f0f2228aed1a09071afb3e264aaa198d6e",329 "language": "MATLAB",330 "lines": 132,331 "truncated": false,332 "block": 11,333 "row": 23128334 },335 {336 "path": "matconvnet-1.0-beta23/examples/cnn_train.m",337 "sha256": "3a3195365df41a9c6e83e09d8f70836189e61cffe2dc4208f33ddc2a6894d74d",338 "language": "MATLAB",339 "lines": 611,340 "truncated": false,341 "block": 12,342 "row": 2020343 },344 {345 "path": "matconvnet-1.0-beta23/examples/cnn_train_dag.m",346 "sha256": "d923f7e62b44c15dfd0009c74dfec88c9f55b73cd3a9048f70ee31e4867cb471",347 "language": "MATLAB",348 "lines": 446,349 "truncated": false,350 "block": 12,351 "row": 1610352 },353 {354 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/+dagnn/LossSmoothL1.m",355 "sha256": "0e4a64821467536bb119f437d232e8766b6160bae33c4df212ad470d5cc80820",356 "language": "MATLAB",357 "lines": 67,358 "truncated": false,359 "block": 11,360 "row": 19377361 },362 {363 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_clip.m",364 "sha256": "8092d14215fc3fbace48ad37a14b192c8666f84d8e8f0e938db7fd5f6c254e72",365 "language": "MATLAB",366 "lines": 12,367 "truncated": false,368 "block": 11,369 "row": 15414370 },371 {372 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_draw.m",373 "sha256": "2e67398a57755b7af47a01421b47b9bb85227dd748ba838e502deca984efc8cc",374 "language": "MATLAB",375 "lines": 62,376 "truncated": false,377 "block": 11,378 "row": 19316379 },380 {381 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_nms.m",382 "sha256": "d7cff186e9218432e916749be129130d10d30c3e275f4349129a43ab0e51980b",383 "language": "MATLAB",384 "lines": 76,385 "truncated": false,386 "block": 11,387 "row": 20037388 },389 {390 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_overlap.m",391 "sha256": "7e62130e4d35b648f684bb17602764c949d5d5dd24b391dc46d6a826440b6b58",392 "language": "MATLAB",393 "lines": 38,394 "truncated": false,395 "block": 11,396 "row": 16296397 },398 {399 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_remove_duplicates.m",400 "sha256": "ae5de2d6988613403a9ee35a7e7ded53828736d074387ff836575a77e5411cfc",401 "language": "MATLAB",402 "lines": 21,403 "truncated": false,404 "block": 11,405 "row": 16069406 },407 {408 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_scale.m",409 "sha256": "d23465724baa03fe2b324cdb2e3ce8c86a56948b609c3cf0c766261f61a30a70",410 "language": "MATLAB",411 "lines": 15,412 "truncated": false,413 "block": 11,414 "row": 15393415 },416 {417 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_transform.m",418 "sha256": "f61d346737dcd0ddcd842a984b7b0eebddacf74a2bfcbf982ca916c0a0da4c0b",419 "language": "MATLAB",420 "lines": 23,421 "truncated": false,422 "block": 11,423 "row": 16577424 },425 {426 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/bbox_functions/bbox_transform_inv.m",427 "sha256": "6070eb197a82510d78db18660cc3451ed8e2825e5f1f29ffd67e78a8563cbb3e",428 "language": "MATLAB",429 "lines": 33,430 "truncated": false,431 "block": 11,432 "row": 16572433 },434 {435 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/datasets/add_bboxreg_targets.m",436 "sha256": "4a6725b6d197ec95abb627b4fcd2577fa1006b52cef5c7147e820f6b21bd3f8e",437 "language": "MATLAB",438 "lines": 86,439 "truncated": false,440 "block": 11,441 "row": 20201442 },443 {444 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/datasets/attach_proposals.m",445 "sha256": "38ae2de147f7587b6f5c0bec3af4b0ed35d6ec75eaa5d63f8da4ff1eb7e4f3f1",446 "language": "MATLAB",447 "lines": 96,448 "truncated": false,449 "block": 11,450 "row": 19875451 },452 {453 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/datasets/cnn_setup_data_voc07.m",454 "sha256": "853ca63e3b7f415d2a97970ac34f8533a8faa9c8975905414a8bc84b06021481",455 "language": "MATLAB",456 "lines": 145,457 "truncated": false,458 "block": 11,459 "row": 22958460 },461 {462 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/datasets/cnn_setup_data_voc07_ssw.m",463 "sha256": "b0ef4997d1dc9c185409bda236cb199a0cbe6e47bafc1a6acb11ef9119cd2132",464 "language": "MATLAB",465 "lines": 102,466 "truncated": false,467 "block": 11,468 "row": 20819469 },470 {471 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/fast_rcnn_demo.m",472 "sha256": "f207460286f33aec90dad18a54184949cf30ad69dfe6d914f525505d48b622ec",473 "language": "MATLAB",474 "lines": 112,475 "truncated": false,476 "block": 11,477 "row": 21911478 },479 {480 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/fast_rcnn_eval_get_batch.m",481 "sha256": "61ef3e5dccebd8fa9aac6ab5357114081e6a5fd4018c47776820fc4fb3e9b6bf",482 "language": "MATLAB",483 "lines": 123,484 "truncated": false,485 "block": 11,486 "row": 20142487 },488 {489 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/fast_rcnn_evaluate.m",490 "sha256": "519ff10c627c58a999483d9ae88dd9882117984ca10689a4edb8805e2c4a43fc",491 "language": "MATLAB",492 "lines": 219,493 "truncated": false,494 "block": 12,495 "row": 141496 },497 {498 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/fast_rcnn_init.m",499 "sha256": "df2cf856bf630102424a4b852103e308121557df7a8ea75abdc07899e0ac1ce2",500 "language": "MATLAB",501 "lines": 106,502 "truncated": false,503 "block": 11,504 "row": 21764505 },506 {507 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/fast_rcnn_train.m",508 "sha256": "c8ce88aab778c3163365c9f440bd2fc4bca0126bda3747be9bbc229bdf8b6f44",509 "language": "MATLAB",510 "lines": 189,511 "truncated": false,512 "block": 11,513 "row": 23538514 },515 {516 "path": "matconvnet-1.0-beta23/examples/fast_rcnn/fast_rcnn_train_get_batch.m",517 "sha256": "b6093d3361191c9b16a700cc24c339a48a2afa2b599fefec01318d2044546738",518 "language": "MATLAB",519 "lines": 166,520 "truncated": false,521 "block": 11,522 "row": 21613523 },524 {525 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet.m",526 "sha256": "969c60694916a194c51700a7efd2a3c8e936d395d109ec6630261995326edb9d",527 "language": "MATLAB",528 "lines": 166,529 "truncated": false,530 "block": 11,531 "row": 23446532 },533 {534 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_camdemo.m",535 "sha256": "8ca853cdc1fcf4c0cd43004f24b0bf1ec16933e4c26338b5f2cf39a35a923e75",536 "language": "MATLAB",537 "lines": 61,538 "truncated": false,539 "block": 11,540 "row": 18619541 },542 {543 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_deploy.m",544 "sha256": "55f728101fb8c89519edcbdf89f744d873f261c1ec8b82f0d12f3ea291ab0591",545 "language": "MATLAB",546 "lines": 185,547 "truncated": false,548 "block": 12,549 "row": 9550 },551 {552 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_evaluate.m",553 "sha256": "0d73cb0e3bbcadf8b7a169b6c91cd00c6c841bd30787817309a13a47da1bdf5c",554 "language": "MATLAB",555 "lines": 154,556 "truncated": false,557 "block": 11,558 "row": 22856559 },560 {561 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_googlenet.m",562 "sha256": "08985985a2c46a79dcbbc22340b5092726f62abcc19602d6e48217034d30a190",563 "language": "MATLAB",564 "lines": 27,565 "truncated": false,566 "block": 11,567 "row": 16453568 },569 {570 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_init.m",571 "sha256": "23769a159f48dd4ff9b5b6b42e3189c6685580f997dacf0956409d711a1b3721",572 "language": "MATLAB",573 "lines": 400,574 "truncated": false,575 "block": 12,576 "row": 1776577 },578 {579 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_init_inception.m",580 "sha256": "3c10e42bad5e5c59034ff4eeaf071b2858f3e906787a6da80a959bb812260aa4",581 "language": "MATLAB",582 "lines": 253,583 "truncated": false,584 "block": 12,585 "row": 107586 },587 {588 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_init_resnet.m",589 "sha256": "e3489b3a0ce55bcd3d2d66faa871f95d1e042cd9e0124d2a9d7659d6dfedf9ce",590 "language": "MATLAB",591 "lines": 195,592 "truncated": false,593 "block": 12,594 "row": 65595 },596 {597 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_minimal.m",598 "sha256": "25058d5aa2f05d79b25858d29ec888b710e443cc9209afd98a3528d2523d69f9",599 "language": "MATLAB",600 "lines": 34,601 "truncated": false,602 "block": 11,603 "row": 17245604 },605 {606 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_setup_data.m",607 "sha256": "d95a9f8b7912321bb6d2fa5698f30be0974dbabc70147b9fd335727d5f2ebec9",608 "language": "MATLAB",609 "lines": 196,610 "truncated": false,611 "block": 12,612 "row": 292613 },614 {615 "path": "matconvnet-1.0-beta23/examples/imagenet/cnn_imagenet_sync_labels.m",616 "sha256": "3712de868fa8d93deb9ed94c2fd4686e7bb9aff94aeb014c5ba56d911ef3a333",617 "language": "MATLAB",618 "lines": 16,619 "truncated": false,620 "block": 11,621 "row": 15788622 },623 {624 "path": "matconvnet-1.0-beta23/examples/imagenet/getImageBatch.m",625 "sha256": "da382837a548cbb2e883ae5feb61bf45a6891bf8eef8171ad12f07381b6bfb61",626 "language": "MATLAB",627 "lines": 65,628 "truncated": false,629 "block": 11,630 "row": 18222631 },632 {633 "path": "matconvnet-1.0-beta23/examples/imagenet/getImageStats.m",634 "sha256": "4f8f65c705d1d27267d761228a0f590ec9f74b32ea2ecb338f784bac825821ba",635 "language": "MATLAB",636 "lines": 50,637 "truncated": false,638 "block": 11,639 "row": 17926640 },641 {642 "path": "matconvnet-1.0-beta23/examples/mnist/cnn_mnist.m",643 "sha256": "d5e374f71cc59415979c44279c6f0739c6e363b72afc2df7e35186df264065dc",644 "language": "MATLAB",645 "lines": 138,646 "truncated": false,647 "block": 11,648 "row": 22521649 },650 {651 "path": "matconvnet-1.0-beta23/examples/mnist/cnn_mnist_experiments.m",652 "sha256": "0e8ee567f7813b6bcc6de331bdba6f074701b83acb288f57e3b20eadd032566b",653 "language": "MATLAB",654 "lines": 26,655 "truncated": false,656 "block": 11,657 "row": 16301658 },659 {660 "path": "matconvnet-1.0-beta23/examples/mnist/cnn_mnist_init.m",661 "sha256": "1f36956e782694d171e92b503179556705f2e3ffb64d490bf0b80aff5215fa45",662 "language": "MATLAB",663 "lines": 81,664 "truncated": false,665 "block": 11,666 "row": 21022667 },668 {669 "path": "matconvnet-1.0-beta23/examples/spatial_transformer/cnn_stn_cluttered_mnist.m",670 "sha256": "5ec3e759cb43f4e49684f0412369b3062620f969602aadebdc9f73efac6e5171",671 "language": "MATLAB",672 "lines": 98,673 "truncated": false,674 "block": 11,675 "row": 21872676 },677 {678 "path": "matconvnet-1.0-beta23/examples/spatial_transformer/cnn_stn_cluttered_mnist_init.m",679 "sha256": "c22e154e395ac78fb97de1e4ca5de15fe22a2b53faa4236660c2375df070c15a",680 "language": "MATLAB",681 "lines": 87,682 "truncated": false,683 "block": 11,684 "row": 22058685 },686 {687 "path": "matconvnet-1.0-beta23/examples/vggfaces/cnn_vgg_faces.m",688 "sha256": "8eb0af6644a5d0fb5405d8898dd7ab707e0bc7dcb583e9c082e6ecfbc179e234",689 "language": "MATLAB",690 "lines": 36,691 "truncated": false,692 "block": 11,693 "row": 17722694 },695 {696 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/DagNN.m",697 "sha256": "7c5b28de5db50966ca664abddcb2c8d9120a746e780d36247636af91aebe7fa0",698 "language": "MATLAB",699 "lines": 432,700 "truncated": false,701 "block": 12,702 "row": 1678703 },704 {705 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/addLayer.m",706 "sha256": "19c58bb4b79c109fae2e5c116722df3dbb424fe783cc10fcbc2029ca3a10f284",707 "language": "MATLAB",708 "lines": 35,709 "truncated": false,710 "block": 11,711 "row": 17587712 },713 {714 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/eval.m",715 "sha256": "ba98b23063b6e6fb4a69d05a702330b8edb049e7da2f325b773a89e4d43ae83d",716 "language": "MATLAB",717 "lines": 119,718 "truncated": false,719 "block": 11,720 "row": 22670721 },722 {723 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/fromSimpleNN.m",724 "sha256": "2582fa50bcc7901576e504941e08bc82c149b2d517d076856ff817c6279e1890",725 "language": "MATLAB",726 "lines": 224,727 "truncated": false,728 "block": 12,729 "row": 274730 },731 {732 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/getVarReceptiveFields.m",733 "sha256": "d369410427cd96c5249f66329116952aa3122b59cd703a16ce26bd81f5ca8188",734 "language": "MATLAB",735 "lines": 113,736 "truncated": false,737 "block": 11,738 "row": 21642739 },740 {741 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/getVarSizes.m",742 "sha256": "0accd58fde979f41fb157726ae3914bcb5edaff38ad00fe02226d729899109dd",743 "language": "MATLAB",744 "lines": 43,745 "truncated": false,746 "block": 11,747 "row": 18165748 },749 {750 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/initParams.m",751 "sha256": "22e6b779aad7ca7f9ade226d8f0070c178706c96c7f8ee94c1e7ccaf8da6e7c7",752 "language": "MATLAB",753 "lines": 22,754 "truncated": false,755 "block": 11,756 "row": 16264757 },758 {759 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/loadobj.m",760 "sha256": "959e297c7cb9272dead2ab0485e25daf6ff3f7a8dc2ddd964122f9e84e51404b",761 "language": "MATLAB",762 "lines": 68,763 "truncated": false,764 "block": 11,765 "row": 19286766 },767 {768 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/move.m",769 "sha256": "46f740cc2fad8e0ee464c598a68197f12aa8bf1a68705c3ad712b62cba961ea6",770 "language": "MATLAB",771 "lines": 29,772 "truncated": false,773 "block": 11,774 "row": 16340775 },776 {777 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/print.m",778 "sha256": "e9c605ce6a5e70641a929b08e971a0856e0f5a4c58751a88a6023daa465f8b10",779 "language": "MATLAB",780 "lines": 460,781 "truncated": false,782 "block": 12,783 "row": 1758784 },785 {786 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/rebuild.m",787 "sha256": "1d79ad19aa5e393edb157f0b71ff134be160bf6e1d55c5ebbf1a6b2620801dde",788 "language": "MATLAB",789 "lines": 97,790 "truncated": false,791 "block": 11,792 "row": 21192793 },794 {795 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/removeLayer.m",796 "sha256": "416f0df1f6bf434646eceeff2e49b0d7b8227acf976505febfd30a285dc86119",797 "language": "MATLAB",798 "lines": 19,799 "truncated": false,800 "block": 11,801 "row": 15961802 },803 {804 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/renameLayer.m",805 "sha256": "af4d1aeb5d1a6b6010a8686c72d0d679656306951b953d72dfb95b4e04e7c077",806 "language": "MATLAB",807 "lines": 28,808 "truncated": false,809 "block": 11,810 "row": 16271811 },812 {813 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/renameVar.m",814 "sha256": "a8c935295b6eb0610ce7c240f9118cc2cd69151f7648f290d3ae30799881b879",815 "language": "MATLAB",816 "lines": 47,817 "truncated": false,818 "block": 11,819 "row": 17830820 },821 {822 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/reset.m",823 "sha256": "960bd2e1aef0b103177629c4ac0f750860f9d8234a89a36e0dd44505a80c9e57",824 "language": "MATLAB",825 "lines": 13,826 "truncated": false,827 "block": 11,828 "row": 15302829 },830 {831 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/saveobj.m",832 "sha256": "61314dcbb451eb2dc7aadbe7a45e0682ddf6e53290de920046e7433b89c3a682",833 "language": "MATLAB",834 "lines": 45,835 "truncated": false,836 "block": 11,837 "row": 18072838 },839 {840 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/setLayerInputs.m",841 "sha256": "1b2d685de20e6a5334a549ca78fe92bac6ecfcaa3efbe88c13217c60dc744753",842 "language": "MATLAB",843 "lines": 11,844 "truncated": false,845 "block": 11,846 "row": 15042847 },848 {849 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/setLayerOutputs.m",850 "sha256": "403918a857c36af27a2d6a872e316de5370d8d08c9f04a9c70d58a2ef32562a0",851 "language": "MATLAB",852 "lines": 11,853 "truncated": false,854 "block": 11,855 "row": 15070856 },857 {858 "path": "matconvnet-1.0-beta23/matlab/+dagnn/@DagNN/setLayerParams.m",859 "sha256": "f275130e299b5cf10362687f8b8a550fc2cf0834b94021887af1a476f6b7bf1f",860 "language": "MATLAB",861 "lines": 11,862 "truncated": false,863 "block": 11,864 "row": 15055865 },866 {867 "path": "matconvnet-1.0-beta23/matlab/+dagnn/AffineGridGenerator.m",868 "sha256": "549e0235c4468e98179eebd7266de6c75457be853a4bc8c5835fcc6e22778f88",869 "language": "MATLAB",870 "lines": 121,871 "truncated": false,872 "block": 11,873 "row": 21023874 },875 {876 "path": "matconvnet-1.0-beta23/matlab/+dagnn/BatchNorm.m",877 "sha256": "f8ee82508a6f53bfbf25157fa311c4c40e179420896c231e586db7dd30ee85e4",878 "language": "MATLAB",879 "lines": 58,880 "truncated": false,881 "block": 11,882 "row": 19241883 },884 {885 "path": "matconvnet-1.0-beta23/matlab/+dagnn/BilinearSampler.m",886 "sha256": "7684b381b1d75fd4331ad66d42e1bbf609c4f079e726377bf9fad22b8c77b53a",887 "language": "MATLAB",888 "lines": 27,889 "truncated": false,890 "block": 11,891 "row": 16236892 },893 {894 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Concat.m",895 "sha256": "bd25dc5862ebce62d9de3982a8c88e4c7790b37a285eacf76da6741d83aab2f5",896 "language": "MATLAB",897 "lines": 58,898 "truncated": false,899 "block": 11,900 "row": 18303901 },902 {903 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Conv.m",904 "sha256": "1d28ce2efe9f20bdec1b43535393aeb9d1a82ea040e0fa99a5a4a0acc2f78b60",905 "language": "MATLAB",906 "lines": 63,907 "truncated": false,908 "block": 11,909 "row": 18787910 },911 {912 "path": "matconvnet-1.0-beta23/matlab/+dagnn/ConvTranspose.m",913 "sha256": "f064a8425692fa05956a351256ab063357b35c0129932b523e9678c9df8d8d41",914 "language": "MATLAB",915 "lines": 89,916 "truncated": false,917 "block": 11,918 "row": 20304919 },920 {921 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Crop.m",922 "sha256": "c8c6e7f2bc15cbd74a49fc098cd212b7f7dc0ec8d7eef2d83a4ed62535a0e77f",923 "language": "MATLAB",924 "lines": 60,925 "truncated": false,926 "block": 11,927 "row": 18676928 },929 {930 "path": "matconvnet-1.0-beta23/matlab/+dagnn/DropOut.m",931 "sha256": "ba76573f35aa9ae279b72c8212e9ca3e51a911eac458267663835706339592b8",932 "language": "MATLAB",933 "lines": 45,934 "truncated": false,935 "block": 11,936 "row": 17177937 },938 {939 "path": "matconvnet-1.0-beta23/matlab/+dagnn/ElementWise.m",940 "sha256": "37dd22ee2f09d07e10cb3bdb8e469447af9210769e5aa47fb0118fd7e190b7f3",941 "language": "MATLAB",942 "lines": 19,943 "truncated": false,944 "block": 11,945 "row": 15566946 },947 {948 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Filter.m",949 "sha256": "2638202216a98db3564285c1e991f600c18cc8360b0241ede644c1c2369f0554",950 "language": "MATLAB",951 "lines": 62,952 "truncated": false,953 "block": 11,954 "row": 18274955 },956 {957 "path": "matconvnet-1.0-beta23/matlab/+dagnn/LRN.m",958 "sha256": "41f31f5d8f6447dfd073e6859b25fde0af8557415ed26e77b58cd0c944adac48",959 "language": "MATLAB",960 "lines": 20,961 "truncated": false,962 "block": 11,963 "row": 15448964 },965 {966 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Layer.m",967 "sha256": "c837af5ae3e4fc4d0e07b317492970bfddcc1717422185f2ec4b73fe873519bb",968 "language": "MATLAB",969 "lines": 267,970 "truncated": false,971 "block": 12,972 "row": 821973 },974 {975 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Loss.m",976 "sha256": "e0e0b06bd2f0f2e1810eee7d0b251f7f1fb5a2b58d3d3b467010e5174ee827c4",977 "language": "MATLAB",978 "lines": 49,979 "truncated": false,980 "block": 11,981 "row": 17726982 },983 {984 "path": "matconvnet-1.0-beta23/matlab/+dagnn/NormOffset.m",985 "sha256": "eeffdf91d6d8555ebdb367ac3d8a1ed46e0ca77531188ad8881f1a30d8140fb3",986 "language": "MATLAB",987 "lines": 20,988 "truncated": false,989 "block": 11,990 "row": 15443991 },992 {993 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Pooling.m",994 "sha256": "c299257fd89029651a4ef13c8b4829d555811cd1d87b498d89105d257d34eaea",995 "language": "MATLAB",996 "lines": 39,997 "truncated": false,998 "block": 11,999 "row": 174501000 },1001 {1002 "path": "matconvnet-1.0-beta23/matlab/+dagnn/ROIPooling.m",1003 "sha256": "a92a51e0a34ccd49fa18cc31bc08d26454b0287d47d72c4858dbb491c31220b4",1004 "language": "MATLAB",1005 "lines": 59,1006 "truncated": false,1007 "block": 11,1008 "row": 184951009 },1010 {1011 "path": "matconvnet-1.0-beta23/matlab/+dagnn/ReLU.m",1012 "sha256": "d607c7a9a75d63b05e241e010d58ce5dec2361988ec655cb807b9e918063b23d",1013 "language": "MATLAB",1014 "lines": 69,1015 "truncated": false,1016 "block": 11,1017 "row": 193801018 },1019 {1020 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Scale.m",1021 "sha256": "000567d57a9b2c96e5fefe53264c56fa2a9ea9cf7568e4aa6840c05cd037df55",1022 "language": "MATLAB",1023 "lines": 40,1024 "truncated": false,1025 "block": 11,1026 "row": 170091027 },1028 {1029 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Sigmoid.m",1030 "sha256": "8c0e619a1b1fdd70c5a90c9a481045743590a8ce46abb8b50deca995415fd117",1031 "language": "MATLAB",1032 "lines": 12,1033 "truncated": false,1034 "block": 11,1035 "row": 150711036 },1037 {1038 "path": "matconvnet-1.0-beta23/matlab/+dagnn/SoftMax.m",1039 "sha256": "5c51ffa21c2dec1a07024c1b0a01de0afb84ca7c9f92006a032225fe45aa2936",1040 "language": "MATLAB",1041 "lines": 16,1042 "truncated": false,1043 "block": 11,1044 "row": 152781045 },1046 {1047 "path": "matconvnet-1.0-beta23/matlab/+dagnn/SpatialNorm.m",1048 "sha256": "df820800fd912da19d3394510edc31ac9c5d9ed653a3c7e8b6a05383e4cc4b61",1049 "language": "MATLAB",1050 "lines": 20,1051 "truncated": false,1052 "block": 11,1053 "row": 154551054 },1055 {1056 "path": "matconvnet-1.0-beta23/matlab/+dagnn/Sum.m",1057 "sha256": "8f82caa9ac28c0096d03e26757d5e7c0f3bab29c875249ec8665994f630fc849",1058 "language": "MATLAB",1059 "lines": 49,1060 "truncated": false,1061 "block": 11,1062 "row": 177441063 },1064 {1065 "path": "matconvnet-1.0-beta23/matlab/+dagnn/UniformScalingGridGenerator.m",1066 "sha256": "ab01679be4d700ceaaa07fbbebcfc31b5b302b43e2037dc54c814dc0dac47e84",1067 "language": "MATLAB",1068 "lines": 101,1069 "truncated": false,1070 "block": 11,1071 "row": 205461072 },1073 {1074 "path": "matconvnet-1.0-beta23/matlab/ParameterServer.m",1075 "sha256": "3dff5be9be995062a7e14d45df8051528cbcf01f6f3f33bd4d5d39b4561ee96b",1076 "language": "MATLAB",1077 "lines": 213,1078 "truncated": false,1079 "block": 11,1080 "row": 234111081 },1082 {1083 "path": "matconvnet-1.0-beta23/matlab/compatibility/parallel/gather.m",1084 "sha256": "f42fa0d00a8a9d50749b9b6c8ae3d5f525c3da02a0fbed3ef6347e0e6fe02411",1085 "language": "MATLAB",1086 "lines": 4,1087 "truncated": false,1088 "block": 11,1089 "row": 146511090 },1091 {1092 "path": "matconvnet-1.0-beta23/matlab/compatibility/parallel/labindex.m",1093 "sha256": "7cdf111674cedf29c47c7f3da11d6f6fff3b2cd81622698ba78050c30d184407",1094 "language": "MATLAB",1095 "lines": 2,1096 "truncated": false,1097 "block": 11,1098 "row": 144581099 },1100 {1101 "path": "matconvnet-1.0-beta23/matlab/compatibility/parallel/numlabs.m",1102 "sha256": "a267bcff7471a818ebf7430844632ea3a831b3bb45e77ba3420a1a9f4f32c089",1103 "language": "MATLAB",1104 "lines": 2,1105 "truncated": false,1106 "block": 11,1107 "row": 144571108 },1109 {1110 "path": "matconvnet-1.0-beta23/matlab/simplenn/vl_simplenn.m",1111 "sha256": "2d0d961b2717fc334e5e9773b4fd246504b44b0d7d58c95bf15db7c55b028113",1112 "language": "MATLAB",1113 "lines": 528,1114 "truncated": false,1115 "block": 12,1116 "row": 19601117 },1118 {1119 "path": "matconvnet-1.0-beta23/matlab/simplenn/vl_simplenn_diagnose.m",1120 "sha256": "49069d5517ec277153a45e06c4f0cba65da9174092e8d3ac9c63fa39efc40915",1121 "language": "MATLAB",1122 "lines": 126,1123 "truncated": false,1124 "block": 11,1125 "row": 207541126 },1127 {1128 "path": "matconvnet-1.0-beta23/matlab/simplenn/vl_simplenn_display.m",1129 "sha256": "ee5c3c491385f2bfa35bf1815e76272dc3e6856ca6efda7b161243cf58f29b17",1130 "language": "MATLAB",1131 "lines": 400,1132 "truncated": false,1133 "block": 12,1134 "row": 14771135 },1136 {1137 "path": "matconvnet-1.0-beta23/matlab/simplenn/vl_simplenn_move.m",1138 "sha256": "179c86e1aab38eafa0eedd4260a7385103f3e2e90d75303cba399448dac77b02",1139 "language": "MATLAB",1140 "lines": 40,1141 "truncated": false,1142 "block": 11,1143 "row": 175741144 },1145 {1146 "path": "matconvnet-1.0-beta23/matlab/simplenn/vl_simplenn_start_parserv.m",1147 "sha256": "1ee875204f394f1c9db19268d2a6db7cdba46d450769cf917d8f98da3440fdc2",1148 "language": "MATLAB",1149 "lines": 25,1150 "truncated": false,1151 "block": 11,1152 "row": 162031153 },1154 {1155 "path": "matconvnet-1.0-beta23/matlab/simplenn/vl_simplenn_tidy.m",1156 "sha256": "aa7037c121f1f07361d8550632de92a9581a33aa310c9b36fdb6c877f98f691b",1157 "language": "MATLAB",1158 "lines": 124,1159 "truncated": false,1160 "block": 11,1161 "row": 208951162 },1163 {1164 "path": "matconvnet-1.0-beta23/matlab/src/bits/data.cpp",1165 "sha256": "66a7a5dcf66be1c702063e19b4c65e061eb6acac571edd30304fb58ef10bc150",1166 "language": "C++",1167 "lines": 4,1168 "truncated": false,1169 "block": 11,1170 "row": 11231171 },1172 {1173 "path": "matconvnet-1.0-beta23/matlab/src/bits/data.cu",1174 "sha256": "ad16119efe8ff34ff083cce5b095f3d5b187b8356f5ff6322da496bea8f68559",1175 "language": "CUDA",1176 "lines": 637,1177 "truncated": false,1178 "block": 11,1179 "row": 82771180 },1181 {1182 "path": "matconvnet-1.0-beta23/matlab/src/bits/datacu.cu",1183 "sha256": "24eec629257ce4a0450b656b48b062a95887132ce3a4a55fa4f92c0ee0d8592c",1184 "language": "CUDA",1185 "lines": 386,1186 "truncated": false,1187 "block": 11,1188 "row": 82451189 },1190 {1191 "path": "matconvnet-1.0-beta23/matlab/src/bits/datamex.cpp",1192 "sha256": "945198fc90622f6ea389f746b21ccc5cd870b8a6e0913b281982ed31e4d62c93",1193 "language": "C++",1194 "lines": 4,1195 "truncated": false,1196 "block": 11,1197 "row": 11301198 },1199 {1200 "path": "matconvnet-1.0-beta23/matlab/src/bits/datamex.cu",