OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/quadbio/morphodynamics_human_brain_organoid",4 "url": "https://github.com/quadbio/morphodynamics_human_brain_organoid",5 "host": "github.com",6 "commit": "ee55623f49c716b56d8d78efa3f1b2f131a055ab",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "4i_analysis/4i_analysis/4i_pipeline/001_run_pipeline_yap_quantifications.ipynb",13 "sha256": "0e733807f8472d5a04392a97eb915b80e5bed045334e2c13f8c74d8e1b372249",14 "language": "Jupyter",15 "lines": 82,16 "truncated": false,17 "block": 22,18 "row": 1257019 },20 {21 "path": "4i_analysis/4i_analysis/4i_pipeline/002_run_pipeline_compartment_analysis.ipynb",22 "sha256": "6096402b55a263aeec5a8490197ff11fd743dede5c83083f36f43651e421f4d6",23 "language": "Jupyter",24 "lines": 97,25 "truncated": false,26 "block": 22,27 "row": 1263328 },29 {30 "path": "4i_analysis/4i_analysis/4i_pipeline/003_run_pipeline_agar_organoids.ipynb",31 "sha256": "65eb5d8a4f2ca39076b8f2639335c34480ac3edaf5bd3fd987b1fb642b44d23e",32 "language": "Jupyter",33 "lines": 97,34 "truncated": false,35 "block": 22,36 "row": 1263437 },38 {39 "path": "4i_analysis/4i_analysis/4i_pipeline/pipeline/cookie_cutter.py",40 "sha256": "4e2e8196890af96701fc2e8ce1ebedeaea2d28a9518916e862ad3c2c39c8d71e",41 "language": "Python",42 "lines": 98,43 "truncated": false,44 "block": 23,45 "row": 326446 },47 {48 "path": "4i_analysis/4i_analysis/4i_pipeline/pipeline/prepare_pipeline.py",49 "sha256": "ae19eb40d19b829d53e5ddea70cf7990777c0b9e5f66e967bfd46a06ef336c28",50 "language": "Python",51 "lines": 262,52 "truncated": false,53 "block": 23,54 "row": 1003755 },56 {57 "path": "4i_analysis/4i_analysis/4i_pipeline/pipeline/prepare_pipeline_compartment_analysis.py",58 "sha256": "17f2c63b21d05526d95558b97b5dc3267ca0cce4c1d657f862c4a7b5f4fd9872",59 "language": "Python",60 "lines": 268,61 "truncated": false,62 "block": 23,63 "row": 1016364 },65 {66 "path": "4i_analysis/4i_analysis/4i_pipeline/pipeline/run_phenoscapes.py",67 "sha256": "daa3e68a3ba24bd3ee258a0f5fd445968d0c5c70256fe4a79278d3ea48f691ec",68 "language": "Python",69 "lines": 40,70 "truncated": false,71 "block": 22,72 "row": 2897073 },74 {75 "path": "4i_analysis/4i_analysis/YAP1_analysis/yap1_quantifications.ipynb",76 "sha256": "2b88a7cc75369e266a13c17f7cc2bf641c574a1bcea6e5747986277f59657afa",77 "language": "Jupyter",78 "lines": 179,79 "truncated": false,80 "block": 22,81 "row": 1288382 },83 {84 "path": "4i_analysis/4i_analysis/compartment_analysis/001_create_compartments.ipynb",85 "sha256": "10bb32dba00f2de37d7b9b43218eebd4b189b22cf5c7059701771d6746e74440",86 "language": "Jupyter",87 "lines": 108,88 "truncated": false,89 "block": 22,90 "row": 1267591 },92 {93 "path": "4i_analysis/4i_analysis/compartment_analysis/002_create_compartment_overlays.ipynb",94 "sha256": "7fcda8047df2c1e9ec6bf631362178bc3fe85b90381178c80cc48281b20c8490",95 "language": "Jupyter",96 "lines": 90,97 "truncated": false,98 "block": 22,99 "row": 12620100 },101 {102 "path": "4i_analysis/4i_analysis/compartment_analysis/003_compartment_morphology.ipynb",103 "sha256": "1256ca584768d810b0e9c0ef816aafc56aa02ec82092d880b407c617c3531504",104 "language": "Jupyter",105 "lines": 74,106 "truncated": false,107 "block": 22,108 "row": 12553109 },110 {111 "path": "4i_analysis/4i_analysis/compartment_analysis/004_nuclei_cytosol_analysis_mean_anndata.ipynb",112 "sha256": "75faa5365560a5f31137e7ab7f00a58942688552ceecdd32b432e576e1bb6c57",113 "language": "Jupyter",114 "lines": 421,115 "truncated": false,116 "block": 22,117 "row": 13371118 },119 {120 "path": "4i_analysis/4i_analysis/compartment_analysis/005_nuclei_cytosol_analysis_mean_analysis.ipynb",121 "sha256": "b52e9b4f0a8acaebde91a8e01b358f09f2718dfe0ab826f278b67aca1f7945d7",122 "language": "Jupyter",123 "lines": 517,124 "truncated": false,125 "block": 22,126 "row": 13410127 },128 {129 "path": "4i_analysis/4i_analysis/compartment_analysis/006_ecm_analysis_mean_anndata.ipynb",130 "sha256": "4610b4a666413351effbddbdc958b7f0f3290e1e8537ebd798990041e87df893",131 "language": "Jupyter",132 "lines": 395,133 "truncated": false,134 "block": 22,135 "row": 13319136 },137 {138 "path": "4i_analysis/4i_analysis/compartment_analysis/007_ecm_analysis_mean_analysis.ipynb",139 "sha256": "493bbfec008d36388abbb56f7e33390a206cccd1f06f114f20d54ce183c87006",140 "language": "Jupyter",141 "lines": 251,142 "truncated": false,143 "block": 22,144 "row": 12974145 },146 {147 "path": "4i_analysis/4i_analysis/compartment_analysis/compartmentalizer/create_compartment.py",148 "sha256": "9a71e4d539a31fb9814dfc27398011daacf661791361f2fe7ca0ad052c252838",149 "language": "Python",150 "lines": 190,151 "truncated": false,152 "block": 23,153 "row": 8625154 },155 {156 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/__init__.py",157 "sha256": "75a11da44c802486bc6f65640aa48a730f0f684c5c07a42ba3cd1735eb3fb070",158 "language": "Python",159 "lines": 2,160 "truncated": false,161 "block": 3,162 "row": 3316163 },164 {165 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/bg_subtraction.py",166 "sha256": "2f2c7e415cdce06f9d9f2fb3856d5c12d0a678bfa62f6e04aadb8343007ffff1",167 "language": "Python",168 "lines": 97,169 "truncated": false,170 "block": 23,171 "row": 5628172 },173 {174 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/cli.py",175 "sha256": "f4d510b93a4594f7696ef5098fc8f1ad75c5dd9da062402e48e60fa56b24a0f9",176 "language": "Python",177 "lines": 323,178 "truncated": false,179 "block": 23,180 "row": 11882181 },182 {183 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/cropping_denoising.py",184 "sha256": "5a3943a7d760017ac052397433dba00571ab032a6878d0f1621667852066ca89",185 "language": "Python",186 "lines": 151,187 "truncated": false,188 "block": 23,189 "row": 7317190 },191 {192 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/feature_extraction.py",193 "sha256": "896c81978ca38e2e50947f2e4a16f2f983e2b549df8d66e0ad31c9c6c06e5d30",194 "language": "Python",195 "lines": 54,196 "truncated": false,197 "block": 23,198 "row": 1932199 },200 {201 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/masking.py",202 "sha256": "5e8188561e9960d10383f35e250e561cc17088b9155b4ff9a41d1dd9df25dfc3",203 "language": "Python",204 "lines": 251,205 "truncated": false,206 "block": 23,207 "row": 8957208 },209 {210 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/montage.py",211 "sha256": "8c92c0e2b1a95b7d6ebb767efa9714ef4aaca5dd63a38eb4257291a8eb9ff1f1",212 "language": "Python",213 "lines": 59,214 "truncated": false,215 "block": 23,216 "row": 2946217 },218 {219 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/morphometrics.py",220 "sha256": "03a74767a0dbbebddd99e9f60088fae1dfe0da9e3fd398f141c9d6bf2e90eed1",221 "language": "Python",222 "lines": 204,223 "truncated": false,224 "block": 23,225 "row": 10046226 },227 {228 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/registration.py",229 "sha256": "778da5ed841bdf2493ea74bd51e256a306593a92287e0d9d13b113c0b6bc1918",230 "language": "Python",231 "lines": 244,232 "truncated": false,233 "block": 23,234 "row": 10347235 },236 {237 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/sc.py",238 "sha256": "f28ae13ed4ec53c3c6c66f90fd89213b2b9383219f0d7f88f613618f35b2023f",239 "language": "Python",240 "lines": 148,241 "truncated": false,242 "block": 23,243 "row": 7031244 },245 {246 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/segmentation.py",247 "sha256": "a256fb42892bb2688ae1f6ff26479e30657d744497e82c32b0476223d8f32d7d",248 "language": "Python",249 "lines": 220,250 "truncated": false,251 "block": 23,252 "row": 9775253 },254 {255 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/speckle_removal.py",256 "sha256": "17dd95056dac1d8a53ab5908daf37f239661b474e1312c980786af2edd55ea42",257 "language": "Python",258 "lines": 150,259 "truncated": false,260 "block": 23,261 "row": 6976262 },263 {264 "path": "4i_analysis/4i_processing/build/lib/phenoscapes/utils.py",265 "sha256": "a4c6515ac9ea92cf7307016d197425d36d5300fe92a2fcd3e1e360bac6c3daa2",266 "language": "Python",267 "lines": 106,268 "truncated": false,269 "block": 23,270 "row": 4427271 },272 {273 "path": "4i_analysis/4i_processing/example_data/run_retina_example.py",274 "sha256": "01af7e76fc27d133fc8fbae2489dbefca31e1ae16c37d262b0f8401d630003b5",275 "language": "Python",276 "lines": 83,277 "truncated": false,278 "block": 23,279 "row": 4099280 },281 {282 "path": "4i_analysis/4i_processing/phenoscapes/__init__.py",283 "sha256": "75a11da44c802486bc6f65640aa48a730f0f684c5c07a42ba3cd1735eb3fb070",284 "language": "Python",285 "lines": 2,286 "truncated": false,287 "block": 3,288 "row": 3316289 },290 {291 "path": "4i_analysis/4i_processing/phenoscapes/bg_subtraction.py",292 "sha256": "2f2c7e415cdce06f9d9f2fb3856d5c12d0a678bfa62f6e04aadb8343007ffff1",293 "language": "Python",294 "lines": 97,295 "truncated": false,296 "block": 23,297 "row": 5628298 },299 {300 "path": "4i_analysis/4i_processing/phenoscapes/cli.py",301 "sha256": "f4d510b93a4594f7696ef5098fc8f1ad75c5dd9da062402e48e60fa56b24a0f9",302 "language": "Python",303 "lines": 323,304 "truncated": false,305 "block": 23,306 "row": 11882307 },308 {309 "path": "4i_analysis/4i_processing/phenoscapes/cropping_denoising.py",310 "sha256": "5a3943a7d760017ac052397433dba00571ab032a6878d0f1621667852066ca89",311 "language": "Python",312 "lines": 151,313 "truncated": false,314 "block": 23,315 "row": 7317316 },317 {318 "path": "4i_analysis/4i_processing/phenoscapes/feature_extraction.py",319 "sha256": "896c81978ca38e2e50947f2e4a16f2f983e2b549df8d66e0ad31c9c6c06e5d30",320 "language": "Python",321 "lines": 54,322 "truncated": false,323 "block": 23,324 "row": 1932325 },326 {327 "path": "4i_analysis/4i_processing/phenoscapes/masking.py",328 "sha256": "5e8188561e9960d10383f35e250e561cc17088b9155b4ff9a41d1dd9df25dfc3",329 "language": "Python",330 "lines": 251,331 "truncated": false,332 "block": 23,333 "row": 8957334 },335 {336 "path": "4i_analysis/4i_processing/phenoscapes/montage.py",337 "sha256": "8c92c0e2b1a95b7d6ebb767efa9714ef4aaca5dd63a38eb4257291a8eb9ff1f1",338 "language": "Python",339 "lines": 59,340 "truncated": false,341 "block": 23,342 "row": 2946343 },344 {345 "path": "4i_analysis/4i_processing/phenoscapes/morphometrics.py",346 "sha256": "03a74767a0dbbebddd99e9f60088fae1dfe0da9e3fd398f141c9d6bf2e90eed1",347 "language": "Python",348 "lines": 204,349 "truncated": false,350 "block": 23,351 "row": 10046352 },353 {354 "path": "4i_analysis/4i_processing/phenoscapes/registration.py",355 "sha256": "778da5ed841bdf2493ea74bd51e256a306593a92287e0d9d13b113c0b6bc1918",356 "language": "Python",357 "lines": 244,358 "truncated": false,359 "block": 23,360 "row": 10347361 },362 {363 "path": "4i_analysis/4i_processing/phenoscapes/sc.py",364 "sha256": "f28ae13ed4ec53c3c6c66f90fd89213b2b9383219f0d7f88f613618f35b2023f",365 "language": "Python",366 "lines": 148,367 "truncated": false,368 "block": 23,369 "row": 7031370 },371 {372 "path": "4i_analysis/4i_processing/phenoscapes/segmentation.py",373 "sha256": "a256fb42892bb2688ae1f6ff26479e30657d744497e82c32b0476223d8f32d7d",374 "language": "Python",375 "lines": 220,376 "truncated": false,377 "block": 23,378 "row": 9775379 },380 {381 "path": "4i_analysis/4i_processing/phenoscapes/speckle_removal.py",382 "sha256": "17dd95056dac1d8a53ab5908daf37f239661b474e1312c980786af2edd55ea42",383 "language": "Python",384 "lines": 150,385 "truncated": false,386 "block": 23,387 "row": 6976388 },389 {390 "path": "4i_analysis/4i_processing/phenoscapes/utils.py",391 "sha256": "a4c6515ac9ea92cf7307016d197425d36d5300fe92a2fcd3e1e360bac6c3daa2",392 "language": "Python",393 "lines": 106,394 "truncated": false,395 "block": 23,396 "row": 4427397 },398 {399 "path": "4i_analysis/4i_processing/setup.py",400 "sha256": "48259a6279d8395325e084d1e3813c7835b0b296bff8d304c987b7844deadb71",401 "language": "Python",402 "lines": 18,403 "truncated": false,404 "block": 22,405 "row": 27890406 },407 {408 "path": "LICENSE",409 "sha256": "4491271b4437429afc7594dcce171eb715e5d142cd9a8a95579a46e940345093",410 "language": "License",411 "lines": 21,412 "truncated": false,413 "block": 22,414 "row": 14033415 },416 {417 "path": "README.md",418 "sha256": "afab917134c78d1adf2ffc62e4d19e5a9c4c34fe9c778f80af1eaf9d1caa79a9",419 "language": "Text",420 "lines": 7,421 "truncated": false,422 "block": 24,423 "row": 366424 },425 {426 "path": "light_sheet_analysis/cell_morphology_analysis/001_annotation.ipynb",427 "sha256": "d682ca6901a38605116748296b5f3cf0e210e77e57a476d77e74acdef9604687",428 "language": "Jupyter",429 "lines": 126,430 "truncated": false,431 "block": 22,432 "row": 12742433 },434 {435 "path": "light_sheet_analysis/cell_morphology_analysis/002_create_training_dataset.ipynb",436 "sha256": "61faafc27708468f38415b9518c5d74a403bb8c5aca347cf28000fbe7811648f",437 "language": "Jupyter",438 "lines": 150,439 "truncated": false,440 "block": 22,441 "row": 12848442 },443 {444 "path": "light_sheet_analysis/cell_morphology_analysis/003_train_evaluate_classifier.ipynb",445 "sha256": "dc5826970b0fcdac56aa1276f3412d7153e78c98e85b0c6202e445944a716342",446 "language": "Jupyter",447 "lines": 92,448 "truncated": false,449 "block": 22,450 "row": 12650451 },452 {453 "path": "light_sheet_analysis/cell_morphology_analysis/004_demultiplex.ipynb",454 "sha256": "2f8495bba60a190d289a282c231a97c1f332c7094ec3b745a232c5a77ba5d4e4",455 "language": "Jupyter",456 "lines": 143,457 "truncated": false,458 "block": 22,459 "row": 12841460 },461 {462 "path": "light_sheet_analysis/cell_morphology_analysis/005_5_label_create_anndata.ipynb",463 "sha256": "5cf027e6554150ef8d0bfbc6e8db88b4767a15de1d40a2d33714face69edd5b5",464 "language": "Jupyter",465 "lines": 149,466 "truncated": false,467 "block": 22,468 "row": 12816469 },470 {471 "path": "light_sheet_analysis/cell_morphology_analysis/006_5_label_morphometric_analysis.ipynb",472 "sha256": "86cbdc1513963e7f11b6d7b1edbbd385cc6fd8962413cae58c2999f05b073110",473 "language": "Jupyter",474 "lines": 137,475 "truncated": false,476 "block": 22,477 "row": 12681478 },479 {480 "path": "light_sheet_analysis/cell_morphology_analysis/007_actin_create_anndata.ipynb",481 "sha256": "0b6205d98d6fcfbf3c382cd472acbfae93e7f67e990ebab3b70fcbbc4571b243",482 "language": "Jupyter",483 "lines": 218,484 "truncated": false,485 "block": 22,486 "row": 12966487 },488 {489 "path": "light_sheet_analysis/cell_morphology_analysis/008_actin_analysis.ipynb",490 "sha256": "581baca98a03d4000feaf826724520fb4f103e9e89ae16210fb8705c72a6cf84",491 "language": "Jupyter",492 "lines": 328,493 "truncated": false,494 "block": 22,495 "row": 13199496 },497 {498 "path": "light_sheet_analysis/cell_morphology_analysis/009_pseudotime_actin.ipynb",499 "sha256": "6c739193ec7161bd2d6b3ba135ce825969e4fb821fc4b235d97a19b3c13f1ae7",500 "language": "Jupyter",501 "lines": 78,502 "truncated": false,503 "block": 22,504 "row": 12560505 },506 {507 "path": "light_sheet_analysis/cell_morphology_analysis/010_angles_to_surface.ipynb",508 "sha256": "65809f986984a299d31bed75a1ba51143f72ec67096827ae370cf661c9ffb57e",509 "language": "Jupyter",510 "lines": 497,511 "truncated": false,512 "block": 22,513 "row": 13510514 },515 {516 "path": "light_sheet_analysis/cell_morphology_analysis/011_extended_figure_label_analysis_5_labels.ipynb",517 "sha256": "c7c229e40e0b513b64e57ac9f69881265a6abb635720a8d7fb815a321464cb3d",518 "language": "Jupyter",519 "lines": 269,520 "truncated": false,521 "block": 22,522 "row": 13086523 },524 {525 "path": "light_sheet_analysis/cell_morphology_analysis/012_extended_figure_label_analysis_ecm_perturbation.ipynb",526 "sha256": "cd810bed650468e28d6744fc16e70e4e5899a45c567377fc8901b147de2b59de",527 "language": "Jupyter",528 "lines": 260,529 "truncated": false,530 "block": 22,531 "row": 13072532 },533 {534 "path": "light_sheet_analysis/cell_morphology_analysis/013_pseudotime_actin_fine_clustering_create_anndata.ipynb",535 "sha256": "ec02c5122adb1052475c4e0b388d30b6c97ac7aa51d4a6d92169cca52a7625ad",536 "language": "Jupyter",537 "lines": 71,538 "truncated": false,539 "block": 22,540 "row": 12523541 },542 {543 "path": "light_sheet_analysis/cell_morphology_analysis/014_pseudotime_actin_fine_grain_analysis.ipynb",544 "sha256": "b0c8a0421a30b66a05ebeee5abb025c86a34a45144bee8bd0d6efac3e8068a9b",545 "language": "Jupyter",546 "lines": 154,547 "truncated": false,548 "block": 22,549 "row": 12700550 },551 {552 "path": "light_sheet_analysis/cell_morphology_analysis/015_shannon_index_analysis.ipynb",553 "sha256": "afff92b77a7d7cb6646bc776e22aaef9f6dea6a7723746643c9696643b6c4018",554 "language": "Jupyter",555 "lines": 231,556 "truncated": false,557 "block": 22,558 "row": 13048559 },560 {561 "path": "light_sheet_analysis/cell_morphology_analysis/morphology/annotator.py",562 "sha256": "153b23e24763e2bb7c03109ac5ceafd90d47352a0dcebd5d7923a3472891626e",563 "language": "Python",564 "lines": 126,565 "truncated": false,566 "block": 23,567 "row": 5424568 },569 {570 "path": "light_sheet_analysis/cell_morphology_analysis/morphology/cell_angle.py",571 "sha256": "d0479f262fb42376849f1e889e10438e629e8bbf6be1c84f1c4bdf626c6e8a76",572 "language": "Python",573 "lines": 22,574 "truncated": false,575 "block": 22,576 "row": 28293577 },578 {579 "path": "light_sheet_analysis/cell_morphology_analysis/morphology/cell_extractor.py",580 "sha256": "8cabf7087894e801fb1a55a1e5a0d5df5eab47e32586946746ba079278e9ede4",581 "language": "Python",582 "lines": 96,583 "truncated": false,584 "block": 23,585 "row": 4068586 },587 {588 "path": "light_sheet_analysis/cell_morphology_analysis/morphology_pipeline_half_res/extract_morphologies.py",589 "sha256": "2aa65c29be0b4dcb3755665388f142e4d5e09865ba24eb1709815a7caa2ec6b9",590 "language": "Python",591 "lines": 97,592 "truncated": false,593 "block": 23,594 "row": 2583595 },596 {597 "path": "light_sheet_analysis/light_sheet_image_pipeline/cell_segmentation/01-data_02_06_23.ipynb",598 "sha256": "1fac8b6292c3d2e0881b7e7cd252b5dda02b0d552a125fe1552ea230cdb9c88c",599 "language": "Jupyter",600 "lines": 225,601 "truncated": false,602 "block": 22,603 "row": 13064604 },605 {606 "path": "light_sheet_analysis/light_sheet_image_pipeline/cell_segmentation/02-train_all_02_06_23.ipynb",607 "sha256": "1a27946d63e4453fa1afad4b19c4d7ef3ddba92cc023f9f668fb805ef1a4b2f2",608 "language": "Jupyter",609 "lines": 348,610 "truncated": false,611 "block": 22,612 "row": 13248613 },614 {615 "path": "light_sheet_analysis/light_sheet_image_pipeline/cell_segmentation/03_prediction_agar_replicates.ipynb",616 "sha256": "b14f06abca1f3f4abe3bb0cb8da1834e71e98265a3e09fe49f447e589d90e670",617 "language": "Jupyter",618 "lines": 270,619 "truncated": false,620 "block": 22,621 "row": 13123622 },623 {624 "path": "light_sheet_analysis/light_sheet_image_pipeline/denoising/denoising_task.py",625 "sha256": "2c81ab6d44539002ddca193bef720c0f70622d5b52bd09e6ddb8e9fb87ce3097",626 "language": "Python",627 "lines": 184,628 "truncated": false,629 "block": 23,630 "row": 7005631 },632 {633 "path": "light_sheet_analysis/light_sheet_image_pipeline/notebooks/.ipynb_checkpoints/002_3D_core_images-checkpoint.ipynb",634 "sha256": "370812e78f700a1216154ff808df989a071feb4e02cd22da579e3917ac59f654",635 "language": "Jupyter",636 "lines": 477,637 "truncated": false,638 "block": 22,639 "row": 13440640 },641 {642 "path": "light_sheet_analysis/light_sheet_image_pipeline/notebooks/001_crop_organoids.ipynb",643 "sha256": "a95e0b94a8b7a2f9be42907f3748e3d85cb3ee4be5f81272e863bbf7119a0887",644 "language": "Jupyter",645 "lines": 162,646 "truncated": false,647 "block": 22,648 "row": 12778649 }650 ]651}