OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/jay-cee-begs/synaptic_suite2p",4 "url": "https://github.com/jay-cee-begs/synaptic_suite2p",5 "host": "github.com",6 "commit": "ae19f9c5c61e324f5fb03c3cfe6d6ab73809af81",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",14 "language": "License",15 "lines": 674,16 "truncated": false,17 "block": 1,18 "row": 223519 },20 {21 "path": "README.md",22 "sha256": "252033713c95250dadb932d07746a1b4b0b1d5b0f114ccd1bb1ca55855c1bc76",23 "language": "Text",24 "lines": 287,25 "truncated": false,26 "block": 8,27 "row": 1081128 },29 {30 "path": "R_analysis/glmm_effect_functions.R",31 "sha256": "39a5e66028184cfe785a9821e282cc9f69ddfbc23c9dc0555aad3fcf557ebe00",32 "language": "R",33 "lines": 492,34 "truncated": false,35 "block": 8,36 "row": 479137 },38 {39 "path": "R_analysis/synapse_effect_bootstraps.R",40 "sha256": "48b026445c9ab6bef85d404a5ff97877e93f27293d0aa56db37eaed2611c982e",41 "language": "R",42 "lines": 200,43 "truncated": false,44 "block": 8,45 "row": 371946 },47 {48 "path": "notebook_scripts/run_pipeline.ipynb",49 "sha256": "a4c80daee3db8a06c944b9ea5a786697cd5dcff7c98983e890cfef40d4175be5",50 "language": "Jupyter",51 "lines": 155,52 "truncated": false,53 "block": 5,54 "row": 1736755 },56 {57 "path": "setup.py",58 "sha256": "7188482b639d7c66a2c8630da827224b0288190b6c9375afe05bb92d43386bd0",59 "language": "Python",60 "lines": 13,61 "truncated": false,62 "block": 6,63 "row": 2163464 },65 {66 "path": "src/analyze_suite2p/analysis_utility.py",67 "sha256": "c0800bac976fb141f26e4781ff1398fab9bc83d2478f6e6ac4a490138a6e73a1",68 "language": "Python",69 "lines": 763,70 "truncated": false,71 "block": 7,72 "row": 1036673 },74 {75 "path": "src/analyze_suite2p/config_loader.py",76 "sha256": "c6276977ee4f62f60252e93d83c5d011f0cc5fcf000255f1b6457f926abce52c",77 "language": "Python",78 "lines": 89,79 "truncated": false,80 "block": 6,81 "row": 3698782 },83 {84 "path": "src/analyze_suite2p/detector_utility.py",85 "sha256": "53c02f5b0f564aa0c7da0206d6648a292cd5c9047dbbe6ceac0bdeaef8c05a91",86 "language": "Python",87 "lines": 436,88 "truncated": false,89 "block": 7,90 "row": 768191 },92 {93 "path": "src/analyze_suite2p/export_cellprofiler_skeletons.py",94 "sha256": "0dc20c60356a54cf8caaf644d0a3d1681eea931300f5748236cc9b1acf1768b1",95 "language": "Python",96 "lines": 358,97 "truncated": false,98 "block": 7,99 "row": 7696100 },101 {102 "path": "src/analyze_suite2p/plotting_utility.py",103 "sha256": "d4fc17c573f62c33533627907d2308805256c2f5d3b8b75340703b5b0fca7469",104 "language": "Python",105 "lines": 654,106 "truncated": false,107 "block": 7,108 "row": 9874109 },110 {111 "path": "src/analyze_suite2p/run_suite2p.py",112 "sha256": "2fc9608a8187128d7b3588cd516ec7ad87072e3d9a466d84d8039c958e1a190b",113 "language": "Python",114 "lines": 306,115 "truncated": false,116 "block": 7,117 "row": 4986118 },119 {120 "path": "src/analyze_suite2p/suite2p_utility.py",121 "sha256": "cde29f62beaab90e8541f21cf48c49cf6587f26834420cf754ec57b178906aca",122 "language": "Python",123 "lines": 354,124 "truncated": false,125 "block": 7,126 "row": 6407127 },128 {129 "path": "src/analyze_suite2p/xs_plots.py",130 "sha256": "e509e3f4a5938cc501a833b4cfd8392a74ea5e4bae944f83291635d0f3d12d5b",131 "language": "Python",132 "lines": 82,133 "truncated": false,134 "block": 6,135 "row": 36793136 },137 {138 "path": "src/gui/config_editor.py",139 "sha256": "d442c0731624a80e9edcb20bbcec6edcce626ad4183bd312af0091f02fd7a607",140 "language": "Python",141 "lines": 348,142 "truncated": false,143 "block": 7,144 "row": 6601145 },146 {147 "path": "src/gui/ops_editor.py",148 "sha256": "76cdcef8ef7783447c9b50f95d5f2a2b103e4a500c07a35fab0fc82b6abcbb00",149 "language": "Python",150 "lines": 195,151 "truncated": false,152 "block": 6,153 "row": 44112154 },155 {156 "path": "src/gui/run_gui.py",157 "sha256": "9500231da15bad57dd4a0bdb78e0e79fb56b05a2b593151b00c3ae2cdb58c622",158 "language": "Python",159 "lines": 6,160 "truncated": false,161 "block": 6,162 "row": 20780163 },164 {165 "path": "src/gui_core/analysis_model.py",166 "sha256": "677ee8cc1c6d02508d4d61c93b6c38ff4e89cec0a855fcacb1dd6180c493f13c",167 "language": "Python",168 "lines": 24,169 "truncated": false,170 "block": 6,171 "row": 23868172 },173 {174 "path": "src/gui_core/folder_logic.py",175 "sha256": "e08cfa6284eb269bc5d2615ba78cae54dd879b7a4576bfaadf7682a718f9cc4a",176 "language": "Python",177 "lines": 105,178 "truncated": false,179 "block": 6,180 "row": 36600181 },182 {183 "path": "src/gui_core/general_settings_model.py",184 "sha256": "f3e42d9d0f62d008101c3b9ac5a381bf3c4ee89c636f038e9afbe37f3eea3b41",185 "language": "Python",186 "lines": 49,187 "truncated": false,188 "block": 6,189 "row": 31731190 },191 {192 "path": "src/gui_core/io.py",193 "sha256": "2d5b42d0d412b7eba16a77cb709f8b7a3fb6944fad707751d7497efd706efb5d",194 "language": "Python",195 "lines": 25,196 "truncated": false,197 "block": 6,198 "row": 25125199 },200 {201 "path": "src/gui_core/multivid_reg_model.py",202 "sha256": "93eb610cecde746c7da7735187b49d2e7769729839896de52859eb302e861285",203 "language": "Python",204 "lines": 18,205 "truncated": false,206 "block": 6,207 "row": 22305208 },209 {210 "path": "xs_code/export_cellprofiler_skeletons.py",211 "sha256": "63d737b2b61666ced656808d482cd512b60dc7e1a5826f2e9039af6c9f158990",212 "language": "Python",213 "lines": 41,214 "truncated": false,215 "block": 6,216 "row": 31740217 }218 ]219}