OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/cyclotronresearchcentre/qmri_mspm_agefx",4 "url": "https://github.com/CyclotronResearchCentre/qMRI_MSPM_AgeFx",5 "host": "github.com",6 "commit": "70aa4674d7fb5ed328c177bdbdbafcdc88340e67",7 "license": "GPL-2.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "8177f97513213526df2cf6184d8ff986c675afb514d4e68a404010521b880643",14   "language": "License",15   "lines": 339,16   "truncated": false,17   "block": 1,18   "row": 222119  },20  {21   "path": "MBatch_1Sttest_empty.m",22   "sha256": "9d5f610e721f0a5a0919b419998310f4c61bdd1c547c1ce76008c45a3f6712d5",23   "language": "MATLAB",24   "lines": 41,25   "truncated": false,26   "block": 6,27   "row": 1221128  },29  {30   "path": "README.md",31   "sha256": "0b870cef46281ed356550d8cb41b9bcfd14b40b85fbd5e90d8507e0930cea139",32   "language": "Text",33   "lines": 63,34   "truncated": false,35   "block": 8,36   "row": 1031837  },38  {39   "path": "SM_code/step1-unzip/SM_unzipp_derivatives.m",40   "sha256": "ec354dbae9dbb38ffccfc76cfbd7e5b91915975295fa3d4f0f2f886d5607d865",41   "language": "MATLAB",42   "lines": 51,43   "truncated": false,44   "block": 6,45   "row": 925046  },47  {48   "path": "SM_code/step10-takeUnionofSPMs/MatlabBatch_SM_union.m",49   "sha256": "7b6508b5a929432acbe7fe214d0748c635e2fab8855a4cbc38d59e04170b5fed",50   "language": "MATLAB",51   "lines": 21,52   "truncated": false,53   "block": 6,54   "row": 887455  },56  {57   "path": "SM_code/step11-canonical_clusters/SM_calc_canonical_val_mean.m",58   "sha256": "e8a57d9b9e5eceed72f414f957c3513e61763bf47f58c51eaeb25d53730ce701",59   "language": "MATLAB",60   "lines": 64,61   "truncated": false,62   "block": 6,63   "row": 1190464  },65  {66   "path": "SM_code/step12-maskMSPMROIs/SM_extract_peak_from_MSPM.m",67   "sha256": "f9be7f63bf94405d050e23623d0878cf19723b7fb580b6abbac2bdd68c2bf168",68   "language": "MATLAB",69   "lines": 61,70   "truncated": false,71   "block": 6,72   "row": 1059473  },74  {75   "path": "SM_code/step13-maskCanonicalvect_ROIs/SM_extract_peak_from_MSPM.m",76   "sha256": "b14b6f673b63dfdfd4a956e33fc6551b9858d10701d77fd6253a26f7a924dcc8",77   "language": "MATLAB",78   "lines": 86,79   "truncated": false,80   "block": 6,81   "row": 1238882  },83  {84   "path": "SM_code/step14-takeDifferenceUnionSPMs-MSPM/sm_take_difference.m",85   "sha256": "bcbe929b5d5274dafb901909819eadd81cdf423cff7e9f8ec23ea32134c949d5",86   "language": "MATLAB",87   "lines": 34,88   "truncated": false,89   "block": 6,90   "row": 662891  },92  {93   "path": "SM_code/step15-pearsonCorrelation/SM_AllROIsMedianVals.m",94   "sha256": "46efe6b82b3bfdbc73879d251ccf4c4737949a50222d5eb76dbf585598e0d5ce",95   "language": "MATLAB",96   "lines": 60,97   "truncated": false,98   "block": 6,99   "row": 10147100  },101  {102   "path": "SM_code/step15-pearsonCorrelation/SM_extractROIMedianAcrossMaps.m",103   "sha256": "f2b698723eb3336505e8a94dc8ea180a10d4fb61d9bfa91855e16e5984cbd2a5",104   "language": "MATLAB",105   "lines": 64,106   "truncated": false,107   "block": 6,108   "row": 10667109  },110  {111   "path": "SM_code/step16-voxelCount/SM_count_N_voxels.m",112   "sha256": "9332ddd8b63fbc509812409144d0dcb244a9ff9f72af269f09db57f8a932cde8",113   "language": "MATLAB",114   "lines": 27,115   "truncated": false,116   "block": 6,117   "row": 5015118  },119  {120   "path": "SM_code/step17-onlySPMorMSPM/SM_take_only_voxels_in_one_image.m",121   "sha256": "e541ccf3dad344c17edc1aa4c865331b225af03c682cb8b737e8606b5f67e207",122   "language": "MATLAB",123   "lines": 29,124   "truncated": false,125   "block": 6,126   "row": 7834127  },128  {129   "path": "SM_code/step18-countNumVoxelsAndClusters/SM_Voxel_Cluster_count.m",130   "sha256": "19de181f841fdded0588ef7041a75e1b7fc932b011f156553c70483dfc46f74a",131   "language": "MATLAB",132   "lines": 50,133   "truncated": false,134   "block": 6,135   "row": 8092136  },137  {138   "path": "SM_code/step2-zscoring/SM_run_within_voxel_z_scoring_for_all_maps.m",139   "sha256": "e2e30be0fc63109825d156e2af0b993ce539fc15945bf8143cc019e32d231438",140   "language": "MATLAB",141   "lines": 64,142   "truncated": false,143   "block": 6,144   "row": 12040145  },146  {147   "path": "SM_code/step2-zscoring/within_voxel_z_scoring.m",148   "sha256": "293959326e61f4640af5a110aca47b1ed90f74911596322899e460ee7cb9b2a1",149   "language": "MATLAB",150   "lines": 61,151   "truncated": false,152   "block": 6,153   "row": 11352154  },155  {156   "path": "SM_code/step2-zscoring/z_scoring.m",157   "sha256": "c1cea0f6c0a66d6030cb82ad5c2049e4f03894adb84a9a05bbd514e1f430256a",158   "language": "MATLAB",159   "lines": 62,160   "truncated": false,161   "block": 6,162   "row": 11764163  },164  {165   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_MTsat.m",166   "sha256": "55163a601e85cb079f0e138bc9a89fb072c2ff81b2df71d15aee0e1bf7f8b283",167   "language": "MATLAB",168   "lines": 9,169   "truncated": false,170   "block": 6,171   "row": 3393172  },173  {174   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_MTsat_job.m",175   "sha256": "f3eb35457f09e875a1a6cf705eb285681877fd594fd81bd5288b855902a38cb3",176   "language": "MATLAB",177   "lines": 733,178   "truncated": false,179   "block": 6,180   "row": 19387181  },182  {183   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_PDmap.m",184   "sha256": "1f62284a4f45f06ec2cdfb17edfc86f7c1fba2242976766f87efc47c2862ba4f",185   "language": "MATLAB",186   "lines": 9,187   "truncated": false,188   "block": 6,189   "row": 3389190  },191  {192   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_PDmap_job.m",193   "sha256": "59f6a748b4907c30bfce2851992359b57070f769c5caf124b370896c9c0f6735",194   "language": "MATLAB",195   "lines": 733,196   "truncated": false,197   "block": 6,198   "row": 19385199  },200  {201   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_R1map.m",202   "sha256": "bf392f11d1083162ed7c165029568fb32c6f1a16ee57da71ad16662b4ecc6970",203   "language": "MATLAB",204   "lines": 9,205   "truncated": false,206   "block": 6,207   "row": 3397208  },209  {210   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_R1map_job.m",211   "sha256": "5b0a0cddffa3a7bc2a140b65e5289fc5af2629ef124b0db9378a38097dab2a99",212   "language": "MATLAB",213   "lines": 733,214   "truncated": false,215   "block": 6,216   "row": 19386217  },218  {219   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_R2starmap.m",220   "sha256": "d632fd6ba7c572a3453517aa62401cfe8dbbd5c73ed83661849e99d0f918844f",221   "language": "MATLAB",222   "lines": 9,223   "truncated": false,224   "block": 6,225   "row": 3417226  },227  {228   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_GM_R2starmap_job.m",229   "sha256": "b4a7cf18b4988aac150c0910879e18cef6428d24d51d5213aa78cd7a98372a9a",230   "language": "MATLAB",231   "lines": 733,232   "truncated": false,233   "block": 6,234   "row": 19391235  },236  {237   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_MTsat.m",238   "sha256": "3145da57d274953708d5830d4ab93e7a6d7cc42def7b7922fc1f2a359ff9c48b",239   "language": "MATLAB",240   "lines": 9,241   "truncated": false,242   "block": 6,243   "row": 3390244  },245  {246   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_MTsat_job.m",247   "sha256": "03a92df800262c80a77ec01ce05bbd5dc6b1d8237424e63ea8646de178adacf5",248   "language": "MATLAB",249   "lines": 733,250   "truncated": false,251   "block": 6,252   "row": 19382253  },254  {255   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_PDmap.m",256   "sha256": "7ac13f93a9fa0a5fe0a847939cac47f9cc3440e7ab7291c6c1757d1560eae445",257   "language": "MATLAB",258   "lines": 9,259   "truncated": false,260   "block": 6,261   "row": 3394262  },263  {264   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_PDmap_job.m",265   "sha256": "17505fa484e4f453a140d8d28c09e5d7ff497fd888d1348920f2d0031ff0c525",266   "language": "MATLAB",267   "lines": 733,268   "truncated": false,269   "block": 6,270   "row": 19383271  },272  {273   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_R1map.m",274   "sha256": "8a5c83861c5bd1e4c1dd807d8d92477d5b00bf42b6dffa248990f4465386282f",275   "language": "MATLAB",276   "lines": 9,277   "truncated": false,278   "block": 6,279   "row": 3396280  },281  {282   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_R1map_job.m",283   "sha256": "307cd9144cb5412478a7009024647e4a0dda481a3f326b02e607cbe83cadf0eb",284   "language": "MATLAB",285   "lines": 733,286   "truncated": false,287   "block": 6,288   "row": 19384289  },290  {291   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_R2starmap.m",292   "sha256": "16c13212532e20e7c7b067a93ab1b1b41beda270eab225f0cce7103592e1b2b5",293   "language": "MATLAB",294   "lines": 9,295   "truncated": false,296   "block": 6,297   "row": 3410298  },299  {300   "path": "SM_code/step3-univariateSPManalysis/MATLABbatch_OneSample_t_test_WM_R2starmap_job.m",301   "sha256": "0fa2dde8dbb24b63eed10ffe9e6da19cbbfd27ce47078c069ff0bf6175661533",302   "language": "MATLAB",303   "lines": 733,304   "truncated": false,305   "block": 6,306   "row": 19390307  },308  {309   "path": "SM_code/step4-multivariateModeling/MATLABbatch_mspm_GM.m",310   "sha256": "70dfb4f2e0228e69f46274d9e0f45bcadd59a2c38105746e6e8c3e0e3c0804b6",311   "language": "MATLAB",312   "lines": 9,313   "truncated": false,314   "block": 6,315   "row": 3301316  },317  {318   "path": "SM_code/step4-multivariateModeling/MATLABbatch_mspm_GM_job.m",319   "sha256": "935b0df58001082381df9dfbcd1df5bb7be615680dd55c3c029961acd65cb060",320   "language": "MATLAB",321   "lines": 12,322   "truncated": false,323   "block": 6,324   "row": 7736325  },326  {327   "path": "SM_code/step4-multivariateModeling/MATLABbatch_mspm_WM.m",328   "sha256": "3c81143c991b278f0721152b13901f10685645859cd1f4a21c3e1582d5986fcf",329   "language": "MATLAB",330   "lines": 9,331   "truncated": false,332   "block": 6,333   "row": 3300334  },335  {336   "path": "SM_code/step4-multivariateModeling/MATLABbatch_mspm_WM_job.m",337   "sha256": "2627125d4f711433682fd04c3d38f689816412c92d9edf6afe842a090aa7c7d3",338   "language": "MATLAB",339   "lines": 12,340   "truncated": false,341   "block": 6,342   "row": 7732343  },344  {345   "path": "SM_code/step4-multivariateModeling/function_run.m",346   "sha256": "3a01a0f2259cf48138ac6ae2e36e815ff05475145f41baf3191abf79e4505e1a",347   "language": "MATLAB",348   "lines": 78,349   "truncated": false,350   "block": 6,351   "row": 12930352  },353  {354   "path": "SM_code/step5-multivariateSPManalysis/MATLABbatch_Analyze_mspm_GM.m",355   "sha256": "a251eb3d8029acaf1e8d0eaee3d24abbe8d88ff23f503e6c6e72eb207d9a7d6e",356   "language": "MATLAB",357   "lines": 9,358   "truncated": false,359   "block": 6,360   "row": 3345361  },362  {363   "path": "SM_code/step5-multivariateSPManalysis/MATLABbatch_Analyze_mspm_GM_job.m",364   "sha256": "e7ad7410d0dd5e93cf672c2283c0e970a8104cedf4d57872334b6470e4b18129",365   "language": "MATLAB",366   "lines": 6,367   "truncated": false,368   "block": 6,369   "row": 3841370  },371  {372   "path": "SM_code/step5-multivariateSPManalysis/MATLABbatch_Analyze_mspm_WM.m",373   "sha256": "92ed097f47d6cf97709ecc2507efbc17cfb48922f478d5599306fa5b10982e49",374   "language": "MATLAB",375   "lines": 9,376   "truncated": false,377   "block": 6,378   "row": 3343379  },380  {381   "path": "SM_code/step5-multivariateSPManalysis/MATLABbatch_Analyze_mspm_WM_job.m",382   "sha256": "5f98ae7c771956d97911799bfeb65f44140cab731a9a62ec24a4e9f6c0de47fc",383   "language": "MATLAB",384   "lines": 6,385   "truncated": false,386   "block": 6,387   "row": 3835388  },389  {390   "path": "SM_code/step6-createSignificantClustersMasks/sm_cluster_masks.m",391   "sha256": "f2c1168e9a6ad92c1ee2fe5529fd57211fcd6e19aa3aefbee71d473894418054",392   "language": "MATLAB",393   "lines": 53,394   "truncated": false,395   "block": 6,396   "row": 9770397  },398  {399   "path": "SM_code/step7-extractROIsBasedOnAAL3Atlas/sm_extract_ROIs.m",400   "sha256": "7fdc76060fc33226968ec8209f1d41def2489e0a2b71d265b9763aa8192e2b30",401   "language": "MATLAB",402   "lines": 31,403   "truncated": false,404   "block": 6,405   "row": 7760406  },407  {408   "path": "SM_code/step8-calculateMediansWithinEachROI/SM_MedianCalc_For_an_ROI.m",409   "sha256": "a61284846f3d7f80dc7e0b8e7af6f87e14dc11d261bf8b7efeb41ee979e7f17e",410   "language": "MATLAB",411   "lines": 75,412   "truncated": false,413   "block": 6,414   "row": 12138415  },416  {417   "path": "SM_code/step8-calculateMediansWithinEachROI/SM_create_median_age_table.m",418   "sha256": "f543996763c2003b4e23e4557b9ea80952ed491980dfda196326245738608dd9",419   "language": "MATLAB",420   "lines": 75,421   "truncated": false,422   "block": 6,423   "row": 12450424  },425  {426   "path": "SM_code/step8-scatterplots/sm_scatter_ROI.m",427   "sha256": "16de66f3242132ffcbd49250b287f51bd9e8bd100086f81d884693e09d346a5a",428   "language": "MATLAB",429   "lines": 111,430   "truncated": false,431   "block": 6,432   "row": 13623433  },434  {435   "path": "SM_code/step8-scatterplots/sm_scatter_ROI_INPUTS.m",436   "sha256": "614d30f765afa7d08b064e2d6e02a54dd7d7b9f8c19f6919ebd29ba72abb685a",437   "language": "MATLAB",438   "lines": 62,439   "truncated": false,440   "block": 6,441   "row": 11152442  },443  {444   "path": "SM_code/step8-scatterplots/sm_scatter_ROI_left_right.m",445   "sha256": "55a767da71d5634626762613c00dd07d654379edd02252332567351a81e7be39",446   "language": "MATLAB",447   "lines": 159,448   "truncated": false,449   "block": 6,450   "row": 15356451  },452  {453   "path": "SM_code/step8-scatterplots/sm_scatter_ROI_z_scored_left_right.m",454   "sha256": "802cd16c12155943a1f70dc21a94b1e687b73ed0199b14bfc8709ddf53df6ffe",455   "language": "MATLAB",456   "lines": 170,457   "truncated": false,458   "block": 6,459   "row": 15768460  },461  {462   "path": "SM_code/step8-scatterplots/sm_scatter_ROI_z_scored_left_right_INPUTS.m",463   "sha256": "5201ac62867a646efe1f744912b9993c98af6f33e519694591e763c99c84a267",464   "language": "MATLAB",465   "lines": 54,466   "truncated": false,467   "block": 6,468   "row": 11024469  },470  {471   "path": "SM_code/step8-scatterplots/sm_scatter_ROI_z_scored_left_right_mean.m",472   "sha256": "1180017075edcf69f3ffa8a041c6a87604a90d78bf91578c280dde6d99dfee50",473   "language": "MATLAB",474   "lines": 165,475   "truncated": false,476   "block": 6,477   "row": 15456478  },479  {480   "path": "SM_code/step8-scatterplots/sm_scatter_ROI_z_scored_left_right_mean_INPUTS.m",481   "sha256": "b4d026648e594d77ecf4d1890db70a8d56a0412185fc56f2b5f8f9f284f62060",482   "language": "MATLAB",483   "lines": 58,484   "truncated": false,485   "block": 6,486   "row": 11879487  },488  {489   "path": "SM_code/step9-scatterPlotMedianvsAgeWithinEachROI/SM_scatterPlots.m",490   "sha256": "63311c97117e62702ebb4d7ba8d61ebe47b924752be7ecb906f0b870e6f2ad4e",491   "language": "MATLAB",492   "lines": 104,493   "truncated": false,494   "block": 6,495   "row": 13191496  },497  {498   "path": "cp_scripts.m",499   "sha256": "040864f06f84ccbab8a35a1bf6d1457fa6d64c5f39ba9ab93e47dab5c4323fb4",500   "language": "MATLAB",501   "lines": 77,502   "truncated": false,503   "block": 6,504   "row": 10653505  },506  {507   "path": "crc_CohenKappaImg.m",508   "sha256": "870fab269f209c808794684c57585bfb2a3c0ad24b7850c1efe44c1fbe0efa50",509   "language": "MATLAB",510   "lines": 66,511   "truncated": false,512   "block": 6,513   "row": 10130514  },515  {516   "path": "crc_check_allCK.m",517   "sha256": "7696691e52ba7798a1990a922986964fb7e6ea02997f9c46c60b827fc988e4ea",518   "language": "MATLAB",519   "lines": 117,520   "truncated": false,521   "block": 6,522   "row": 14981523  },524  {525   "path": "crc_gunzip.m",526   "sha256": "9fcdd0403c3c4fde8be87695cc1615b96d04d18be0543f796fbf76e8974d2994",527   "language": "MATLAB",528   "lines": 98,529   "truncated": false,530   "block": 6,531   "row": 12169532  },533  {534   "path": "crc_gzip.m",535   "sha256": "d4712559252166da1885c4415475887cba312a8ec977b84e42aa29caf8893837",536   "language": "MATLAB",537   "lines": 98,538   "truncated": false,539   "block": 6,540   "row": 12266541  },542  {543   "path": "crc_qMRIage_01_prepdata.m",544   "sha256": "0432502540327a210130c64c32cf1aaa72c89b5a8ed0e16d0cd65c9f1d018fcc",545   "language": "MATLAB",546   "lines": 27,547   "truncated": false,548   "block": 6,549   "row": 6011550  },551  {552   "path": "crc_qMRIage_02_zscoring.m",553   "sha256": "fea13f5ff58771299dcdf5867365cde2274ff2bcd5b81a6000fa2a773a63a762",554   "language": "MATLAB",555   "lines": 141,556   "truncated": false,557   "block": 6,558   "row": 14832559  },560  {561   "path": "crc_qMRIage_03_uSPM.m",562   "sha256": "d2f6304d1152ad5589705f1c3ef6ff8c247d22dbbc36d2a2758e0abd4c29f951",563   "language": "MATLAB",564   "lines": 134,565   "truncated": false,566   "block": 6,567   "row": 14740568  },569  {570   "path": "crc_qMRIage_04_mSPM.m",571   "sha256": "493c443e7e67e5cd6d8db22ff83d8ced7a4affb5004cc41fe750467908f262ea",572   "language": "MATLAB",573   "lines": 74,574   "truncated": false,575   "block": 6,576   "row": 11758577  },578  {579   "path": "crc_qMRIage_05_signifClusVxl.m",580   "sha256": "d64d0a628e63f23e9b816c62f5629fbe39ceb2b6fbc93ce7bdf5cb3b7255f2fd",581   "language": "MATLAB",582   "lines": 231,583   "truncated": false,584   "block": 6,585   "row": 16334586  },587  {588   "path": "crc_qMRIage_CrossVal.m",589   "sha256": "317bfe1b69d41a4c11db92ca92b79ade36cb00aadd290987033cdae2f87c20d0",590   "language": "MATLAB",591   "lines": 77,592   "truncated": false,593   "block": 6,594   "row": 11873595  },596  {597   "path": "crc_qMRIage_defaults.m",598   "sha256": "94e3ba0d4314ab5154fb405ebcb462c7dd3a132a63e9ae1dbd619a6a00083710",599   "language": "MATLAB",600   "lines": 73,601   "truncated": false,602   "block": 6,603   "row": 11592604  },605  {606   "path": "crc_qMRIage_main.m",607   "sha256": "161eecae6ba1fc02e477d0199545cf563e300e4ced291b68d6db12f41e912791",608   "language": "MATLAB",609   "lines": 110,610   "truncated": false,611   "block": 6,612   "row": 13291613  },614  {615   "path": "crc_save_matlabbatch.m",616   "sha256": "b2a125c37641416e9a0713ac75cecea0e9247d6d96ac7e29ed174542bd2bb339",617   "language": "MATLAB",618   "lines": 58,619   "truncated": false,620   "block": 6,621   "row": 10440622  }623 ]624}