Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__kschan0214__gacelle.json1929 linesDownload Raw Back to 63
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/kschan0214/gacelle",4 "url": "https://github.com/kschan0214/gacelle",5 "host": "github.com",6 "commit": "05f49d48dac7926b6c69a5612ec5dfca7f8cee1b",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "AxCaliberSMT/demo_gpuAxCaliberSMT_NoisePropagation.m",13   "sha256": "dcc6f3a3d4cba3b774a1dcc4f7d39ad7aec8052fcb7663a5aeab3618a23b245c",14   "language": "MATLAB",15   "lines": 113,16   "truncated": false,17   "block": 6,18   "row": 1317719  },20  {21   "path": "AxCaliberSMT/demo_gpuAxCaliberSMT_invivoData.m",22   "sha256": "0c4cec8ede9762dce668b7169abec16ec30d0b9377654cdc2bc4e6b5f1668180",23   "language": "MATLAB",24   "lines": 110,25   "truncated": false,26   "block": 6,27   "row": 1444928  },29  {30   "path": "AxCaliberSMT/gpuAxCaliberSMT.m",31   "sha256": "bdb3bac4b0fc4be23eb056e79fa47b805290e61133cdab8fa938d48cee7004a1",32   "language": "MATLAB",33   "lines": 816,34   "truncated": false,35   "block": 6,36   "row": 1940837  },38  {39   "path": "AxCaliberSMT/private/AxCaliberSMT_signal_combine.m",40   "sha256": "627e258be057e0d73b45963d3cf2da8eace72339adfee59718be8d2c53fa08d2",41   "language": "MATLAB",42   "lines": 26,43   "truncated": false,44   "block": 6,45   "row": 536346  },47  {48   "path": "AxCaliberSMT/private/AxCaliberSMT_vanGelderen_decay_part1.m",49   "sha256": "2cd5957f4c5a51b6a17a5dc807f1f9d111847853a2ec5423c7dc88efef38bd14",50   "language": "MATLAB",51   "lines": 27,52   "truncated": false,53   "block": 6,54   "row": 601755  },56  {57   "path": "AxCaliberSMT/private/AxCaliberSMT_vanGelderen_decay_part2.m",58   "sha256": "3d84c8859b42c055855803caf9ab5c3887e453927e85a70cb75ca5a0d30af4e8",59   "language": "MATLAB",60   "lines": 22,61   "truncated": false,62   "block": 6,63   "row": 405664  },65  {66   "path": "AxCaliberSMT/private/MEAxCaliberSMT_signal_combine.m",67   "sha256": "0a8d17c563c3c2bc65d2e85bb349e3dd6326186dcf1074b14c64d82e49143cae",68   "language": "MATLAB",69   "lines": 7,70   "truncated": false,71   "block": 6,72   "row": 242973  },74  {75   "path": "AxCaliberSMT/private/diffusion_relaxation_SMT_sphere_unrestricted.m",76   "sha256": "d4a21bc8376bc87e0c29e8c4340caa13be4d9bd54997cf6a0d8b16186bfae73d",77   "language": "MATLAB",78   "lines": 6,79   "truncated": false,80   "block": 6,81   "row": 242382  },83  {84   "path": "AxCaliberSMT/private/diffusion_relaxation_SMT_stick.m",85   "sha256": "24600b0c3949ef4be417d304b3087fddb9f770a49013a073bd14b2b0287e2f8a",86   "language": "MATLAB",87   "lines": 5,88   "truncated": false,89   "block": 6,90   "row": 257891  },92  {93   "path": "AxCaliberSMT/private/diffusion_relaxation_SMT_zeppelin.m",94   "sha256": "9e612b52261e2902815f3cec2844f1dba5f1a7c44e7478943bfbba51663baf6e",95   "language": "MATLAB",96   "lines": 9,97   "truncated": false,98   "block": 6,99   "row": 3190100  },101  {102   "path": "AxCaliberSMT/sandbox/demo_gpuMEAxCaliberSMT_NoisePropagation.m",103   "sha256": "b8e415e4cb692eaf0ad064855c0c81aab72035360dc3c517a56b6e4581757e12",104   "language": "MATLAB",105   "lines": 118,106   "truncated": false,107   "block": 6,108   "row": 13925109  },110  {111   "path": "AxCaliberSMT/sandbox/deprecated/demo_gpuAxCaliberSMT_NoisePropagation_mcmc.m",112   "sha256": "5054a1f394089b948d364627253132ec7d06982434565083171e6c73ce859b79",113   "language": "MATLAB",114   "lines": 75,115   "truncated": false,116   "block": 6,117   "row": 11281118  },119  {120   "path": "AxCaliberSMT/sandbox/deprecated/demo_gpuAxCaliberSMTmcmc_NoisePropagation.m",121   "sha256": "ac3c7139948c9155140a49db325529bb88aec1dec4e56a8240915febe504d0e2",122   "language": "MATLAB",123   "lines": 73,124   "truncated": false,125   "block": 6,126   "row": 10844127  },128  {129   "path": "AxCaliberSMT/sandbox/deprecated/demo_gpuAxCaliberSMTmcmc_invivoData.m",130   "sha256": "53bed6d60715ab7e850225cf86f8501772b732c10478f9c608c0d1b1694b45b3",131   "language": "MATLAB",132   "lines": 246,133   "truncated": false,134   "block": 6,135   "row": 17375136  },137  {138   "path": "AxCaliberSMT/sandbox/deprecated/demo_gpuMEAxCaliberSMT_NoisePropagation_mcmc.m",139   "sha256": "82431b2e0c9b0c52763cd228d2b92abbf2a91468ead9bc1124f3f1b2a0ea91a8",140   "language": "MATLAB",141   "lines": 88,142   "truncated": false,143   "block": 6,144   "row": 12542145  },146  {147   "path": "AxCaliberSMT/sandbox/deprecated/gpuAxCaliberSMTmcmc.m",148   "sha256": "03e6adb69d133fee0c86e859eb7c3d32f85535dc2c03b01954c7108d711879d3",149   "language": "MATLAB",150   "lines": 564,151   "truncated": false,152   "block": 6,153   "row": 19358154  },155  {156   "path": "AxCaliberSMT/sandbox/deprecated/gpuMEAxCaliberSMTmcmc.m",157   "sha256": "2b66b2c062991ff723d5d26015e0be76374b145cade2eee599f50f111058a859",158   "language": "MATLAB",159   "lines": 819,160   "truncated": false,161   "block": 6,162   "row": 19406163  },164  {165   "path": "AxCaliberSMT/sandbox/gpuAxonalT2model.m",166   "sha256": "1a109e45f8a6699e43185e64d6021e9f7a64cbd2a8fc43a2bc718495489d838c",167   "language": "MATLAB",168   "lines": 677,169   "truncated": false,170   "block": 6,171   "row": 19079172  },173  {174   "path": "AxCaliberSMT/sandbox/gpuMEAxCaliberSMT.m",175   "sha256": "3eee5a31c5f106cab9f072c122d943d1e7436fe7c9573655f9be7f4f7d1323b8",176   "language": "MATLAB",177   "lines": 1431,178   "truncated": false,179   "block": 6,180   "row": 19454181  },182  {183   "path": "AxCaliberSMT/sandbox/gpuMEAxCaliberSMT_gammaDist.m",184   "sha256": "3c158069f3dd8cd3d523840476ee39bc94aa88f4729a6dceb868fd74bc843ad8",185   "language": "MATLAB",186   "lines": 829,187   "truncated": false,188   "block": 6,189   "row": 19402190  },191  {192   "path": "AxCaliberSMT/sandbox/gpuMEAxCaliberSMT_gammaDist_sd.m",193   "sha256": "5aeaa17f4bba8c364f38aac283557fcb1bdda246572c7b61d9144f2bc7006d45",194   "language": "MATLAB",195   "lines": 830,196   "truncated": false,197   "block": 6,198   "row": 19403199  },200  {201   "path": "AxCaliberSMT/sandbox/gpuMEAxCaliberSMTmcmc_update.m",202   "sha256": "13977cb2b3caf38af0e6ee2e4a4247a3eef518105c36785553a8aa4eb0ada876",203   "language": "MATLAB",204   "lines": 817,205   "truncated": false,206   "block": 6,207   "row": 19405208  },209  {210   "path": "LICENSE",211   "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",212   "language": "License",213   "lines": 674,214   "truncated": false,215   "block": 1,216   "row": 2235217  },218  {219   "path": "MCRMWI/EPGXgen_net/feature_preprocess_MCRMWI_MLP_EPGX_leakyrelu.m",220   "sha256": "88b31f45fe2b9d8a78f75c6cef13645374feec07012dcc1da0f49a695e136014",221   "language": "MATLAB",222   "lines": 194,223   "truncated": false,224   "block": 6,225   "row": 18314226  },227  {228   "path": "MCRMWI/EPGXgen_net/mlp_model_leakyRelu.m",229   "sha256": "22d5a24120f262de61185b5d3f245179d6baf07946002419cb4b1aca4f222039",230   "language": "MATLAB",231   "lines": 47,232   "truncated": false,233   "block": 6,234   "row": 7134235  },236  {237   "path": "MCRMWI/EPGXgen_net/modelGradients_mcr_1d.m",238   "sha256": "871dfddee335185f8505f94f59a36bbe24a36b7164fbaca50bedec5eca75b42b",239   "language": "MATLAB",240   "lines": 31,241   "truncated": false,242   "block": 6,243   "row": 7850244  },245  {246   "path": "MCRMWI/EPGXgen_net/model_GRE_steadystate_Bloch.m",247   "sha256": "af8fe4b2f564a9ca602eeb54575330dad6b1523c08f6a03e2727481976765ace",248   "language": "MATLAB",249   "lines": 4,250   "truncated": false,251   "block": 6,252   "row": 2439253  },254  {255   "path": "MCRMWI/EPGXgen_net/model_mcr_ann_1d.m",256   "sha256": "a311fa90daff3416899964a795795762bdf976a2327ca1e21d1f230f0adb1cf0",257   "language": "MATLAB",258   "lines": 76,259   "truncated": false,260   "block": 6,261   "row": 14431262  },263  {264   "path": "MCRMWI/EPGXgen_net/mpl_training/README.m",265   "sha256": "63254a28e358b1c438f1e28c36a31469ae410d05fe90ac6ff3b1420260f66828",266   "language": "MATLAB",267   "lines": 17,268   "truncated": false,269   "block": 6,270   "row": 4277271  },272  {273   "path": "MCRMWI/EPGXgen_net/mpl_training/Step01_create_epgx_dictionary_rfphase50.m",274   "sha256": "ef2ed32c24392c2ea714e7135984a7aeb112cf8d95c6607e0d45f7ae9d3e3c06",275   "language": "MATLAB",276   "lines": 130,277   "truncated": false,278   "block": 6,279   "row": 13510280  },281  {282   "path": "MCRMWI/EPGXgen_net/mpl_training/Step02_train_mlp_epgx_ANN_phase_N2e6.m",283   "sha256": "ea415a2146923b501cf69a8e68376f50e38d8cdb3a5fff5337ecef0bdd0673a7",284   "language": "MATLAB",285   "lines": 260,286   "truncated": false,287   "block": 6,288   "row": 17277289  },290  {291   "path": "MCRMWI/EPGXgen_net/mpl_training/Step03_train_mlp_epgx_ANN_magn_N2e6.m",292   "sha256": "f39724ebe44587ba6cb10c16cfcd3c2dceabc65ad6a050cb215d2d9593662c73",293   "language": "MATLAB",294   "lines": 285,295   "truncated": false,296   "block": 6,297   "row": 17585298  },299  {300   "path": "MCRMWI/EPGXgen_net/mpl_training/Step04_validate_ANN_20250819.m",301   "sha256": "224003872b4cc150f4111420f4aafe5ef6b47be67707fbc0ae31e087c84f8afe",302   "language": "MATLAB",303   "lines": 358,304   "truncated": false,305   "block": 6,306   "row": 17943307  },308  {309   "path": "MCRMWI/EPGXgen_net/mpl_training/compute_number_learnable_params.m",310   "sha256": "c60cdee32bb80abf3220675258dcc89091bc01d4cd3b03cbc8b43c3f20993add",311   "language": "MATLAB",312   "lines": 21,313   "truncated": false,314   "block": 6,315   "row": 3654316  },317  {318   "path": "MCRMWI/EPGXgen_net/mpl_training/create_mlp.m",319   "sha256": "434f13ecd6f26e8067ce1cde886206efb638f249f0dc40615000b33bcadd7f1f",320   "language": "MATLAB",321   "lines": 80,322   "truncated": false,323   "block": 6,324   "row": 10858325  },326  {327   "path": "MCRMWI/EPGXgen_net/mpl_training/feature_preprocess_MCRMWI_MLP_EPGX_leakyrelu.m",328   "sha256": "88b31f45fe2b9d8a78f75c6cef13645374feec07012dcc1da0f49a695e136014",329   "language": "MATLAB",330   "lines": 194,331   "truncated": false,332   "block": 6,333   "row": 18314334  },335  {336   "path": "MCRMWI/EPGXgen_net/mpl_training/modelGradients_mlp_epgx_ANN_corr_L1.m",337   "sha256": "9132fa0541a78b890553a2af960405f785828aaa10f719d63792ed6e88ded12d",338   "language": "MATLAB",339   "lines": 64,340   "truncated": false,341   "block": 6,342   "row": 9944343  },344  {345   "path": "MCRMWI/EPGXgen_net/mpl_training/rand_in_range.m",346   "sha256": "3a8f42ee84454c6c201ce21c5537afddb74f7d24f174800feaaab38035a682b9",347   "language": "MATLAB",348   "lines": 4,349   "truncated": false,350   "block": 6,351   "row": 2230352  },353  {354   "path": "MCRMWI/demo_gpuGREMWI_invivo.m",355   "sha256": "29e4d1fea011c84a44b746a39cb8bef8cc7987f552b8f2554d5def5ba7c97d9b",356   "language": "MATLAB",357   "lines": 162,358   "truncated": false,359   "block": 6,360   "row": 15947361  },362  {363   "path": "MCRMWI/demo_gpuGREMWI_noisePropagation.m",364   "sha256": "bb004691353e02c39eda6ddd294e87d8f60a0ff2e66726fdc56557fe6186fffb",365   "language": "MATLAB",366   "lines": 145,367   "truncated": false,368   "block": 6,369   "row": 14533370  },371  {372   "path": "MCRMWI/demo_gpuMCRMWI_invivo.m",373   "sha256": "bb32656aa4a357b9d84d95d3d711d73c989fd9ac703de89362acfad7be7bd787",374   "language": "MATLAB",375   "lines": 168,376   "truncated": false,377   "block": 6,378   "row": 16300379  },380  {381   "path": "MCRMWI/demo_gpuMCRMWI_noisePropagation.m",382   "sha256": "054bba9d89e1f5f36aced6c73b43b7645f83946294d711bcbac4341f694f5457",383   "language": "MATLAB",384   "lines": 143,385   "truncated": false,386   "block": 6,387   "row": 15066388  },389  {390   "path": "MCRMWI/despot1.m",391   "sha256": "b219bd3c7d026aac9d0c6d84f1fbd7dc0e3200cf697160a2a2177df767444e6e",392   "language": "MATLAB",393   "lines": 258,394   "truncated": false,395   "block": 6,396   "row": 16870397  },398  {399   "path": "MCRMWI/gpuGREMWI.m",400   "sha256": "58bcdf0532f348fcc2f123b8ad4f01c40ae3540ae317af0ade4a74c9f339f3de",401   "language": "MATLAB",402   "lines": 915,403   "truncated": false,404   "block": 6,405   "row": 19213406  },407  {408   "path": "MCRMWI/gpuMCRMWI.m",409   "sha256": "8bc8659e5e595bb437a0b5539ac8c748d498d43b9d97373b40c1742fe9091d95",410   "language": "MATLAB",411   "lines": 1207,412   "truncated": false,413   "block": 6,414   "row": 19338415  },416  {417   "path": "MCRMWI/private/MCRMWI_Simag.m",418   "sha256": "011268f516528a53600d0876721ed39be013f5d5dd9158b70e9acd5fd2fda792",419   "language": "MATLAB",420   "lines": 8,421   "truncated": false,422   "block": 6,423   "row": 4284424  },425  {426   "path": "MCRMWI/private/MCRMWI_Sreal.m",427   "sha256": "b5bb040d65af1780614e739f2a0cb6e6c325b9abf6430be4c15f38901b70e818",428   "language": "MATLAB",429   "lines": 8,430   "truncated": false,431   "block": 6,432   "row": 4286433  },434  {435   "path": "MCRMWI/private/compute_gremwi_signal.m",436   "sha256": "1f5d18c230429b691d0f3e0d32e140a9e28abecd5d52e59d67b5d1225e6d93ee",437   "language": "MATLAB",438   "lines": 15,439   "truncated": false,440   "block": 6,441   "row": 6179442  },443  {444   "path": "MCRMWI/private/gremwi_S0_compartments.m",445   "sha256": "ecc1b36f458661cb3e89c73cc5b81351ce1b601bd1d4b9d20d5dd7d42d1d083c",446   "language": "MATLAB",447   "lines": 7,448   "truncated": false,449   "block": 6,450   "row": 2541451  },452  {453   "path": "MCRMWI/private/hcfm_fibre_volume_fraction.m",454   "sha256": "5d2272753eda86ed3b7b0bc39a542bed046d9c98de6c3d987d7d12f74e6a94eb",455   "language": "MATLAB",456   "lines": 5,457   "truncated": false,458   "block": 6,459   "row": 2407460  },461  {462   "path": "MCRMWI/private/hcfm_gratio.m",463   "sha256": "d7a419bc6670d8d1c72450e282faf2d524283135c11b8e4c5dd6a0b4a78197e7",464   "language": "MATLAB",465   "lines": 5,466   "truncated": false,467   "block": 6,468   "row": 2259469  },470  {471   "path": "MCRMWI/private/model_BM_2T1_analytical.m",472   "sha256": "1a77adf14f5cac92c6cad93abbf6d0856b0c8b566270bdfa05fce84353a6d54e",473   "language": "MATLAB",474   "lines": 33,475   "truncated": false,476   "block": 6,477   "row": 8079478  },479  {480   "path": "MCRMWI/private/model_Bloch_2T1.m",481   "sha256": "f5ee0a8f6349957cab820de0f73e4f4a79ffd6d6d1cdc083e331c56e872ce9cf",482   "language": "MATLAB",483   "lines": 8,484   "truncated": false,485   "block": 6,486   "row": 3806487  },488  {489   "path": "MCRMWI/private/model_DIMWI.m",490   "sha256": "1759eaf6cc8a7481ed8e10a4195484214f00716a10692d9c1f33040c9da877d7",491   "language": "MATLAB",492   "lines": 28,493   "truncated": false,494   "block": 6,495   "row": 7127496  },497  {498   "path": "MCRMWI/sandbox/gpuMCRMWImcmc.m",499   "sha256": "8ed6f724c6bc90b100eedc1d92cf6b6887b96dd39e93c8caeff29f38be016f26",500   "language": "MATLAB",501   "lines": 1109,502   "truncated": false,503   "block": 6,504   "row": 19326505  },506  {507   "path": "MCRMWI/signal_steadystate_Bloch.m",508   "sha256": "f581356d5e5d7052c0fdeee08053569e5e0c7e9c1e0beef570fdbad26e208f01",509   "language": "MATLAB",510   "lines": 27,511   "truncated": false,512   "block": 6,513   "row": 4862514  },515  {516   "path": "MCRMWI/validation_MCRMWI.m",517   "sha256": "bb91e645ce54440903aef72bcf7fd58e174905b1429449b737bbdec96b07a0ee",518   "language": "MATLAB",519   "lines": 96,520   "truncated": false,521   "block": 6,522   "row": 11940523  },524  {525   "path": "NEXI/NEXI.m",526   "sha256": "6ac515ed5c2d5a555ec3c9be013e53405665b713566b77e657e42dcb00bd9868",527   "language": "MATLAB",528   "lines": 406,529   "truncated": false,530   "block": 6,531   "row": 19060532  },533  {534   "path": "NEXI/NEXIrotinv.m",535   "sha256": "d7e4450f9d0aaeccfc9eea1cff124b27929ecf115727a81aa2e0a6692d0e3de0",536   "language": "MATLAB",537   "lines": 485,538   "truncated": false,539   "block": 6,540   "row": 19395541  },542  {543   "path": "NEXI/demo_gpuNEXI_NoisePropagation.m",544   "sha256": "f092afe2769130de137b0287f3fd6d2ed197b4e8f4adc59f8342762ee5159770",545   "language": "MATLAB",546   "lines": 133,547   "truncated": false,548   "block": 6,549   "row": 14189550  },551  {552   "path": "NEXI/demo_gpuNEXI_NoisePropagation_advanced.m",553   "sha256": "b9a988ad233e7847928d94f36f634201113bebd3895014dd91317c811797f81c",554   "language": "MATLAB",555   "lines": 123,556   "truncated": false,557   "block": 6,558   "row": 13804559  },560  {561   "path": "NEXI/demo_gpuNEXI_invivo.m",562   "sha256": "ac413eba877b589ce9747ab94bf0df4cccb01da71a0b233acb7d6ecf4105e6db",563   "language": "MATLAB",564   "lines": 81,565   "truncated": false,566   "block": 6,567   "row": 12774568  },569  {570   "path": "NEXI/gpuNEXI.m",571   "sha256": "1d2859824e40619c3b62cbcf6427ed313fd68c83f6d16ad4ab0d9370de0daad9",572   "language": "MATLAB",573   "lines": 1347,574   "truncated": false,575   "block": 6,576   "row": 19378577  },578  {579   "path": "NEXI/private/NEXI_M.m",580   "sha256": "6939b74d4b5bd2c4bb9d4cef7793feebde5c9715cfa052a19349e7adf1fdf682",581   "language": "MATLAB",582   "lines": 19,583   "truncated": false,584   "block": 6,585   "row": 4602586  },587  {588   "path": "NEXI/private/NEXI_MSl2.m",589   "sha256": "8a76a2e603b1f39b43d9bab3c470ca3a2de77c9d040e36afadec2b1181fa7f53",590   "language": "MATLAB",591   "lines": 16,592   "truncated": false,593   "block": 6,594   "row": 3289595  },596  {597   "path": "NEXI/sandbox/gpuNEXIdot.m",598   "sha256": "9467d3042e8f104bc5319a98955603c82d87ad050008a9fe4a50596327878503",599   "language": "MATLAB",600   "lines": 273,601   "truncated": false,602   "block": 6,603   "row": 17535604  },605  {606   "path": "NEXI/sandbox/gpuNEXIrice.m",607   "sha256": "3316ffc87042c58c3867cc2e6b39bde1b290450aa9c8ca3b1a73cdb6629cff59",608   "language": "MATLAB",609   "lines": 776,610   "truncated": false,611   "block": 6,612   "row": 19141613  },614  {615   "path": "R1R2s/demo_gpuJointR1R2starMapping_NoisePropagation.m",616   "sha256": "d014ad5f622a2f825af9119e88dd8f0013b268cbc68c4850b438030d546205ab",617   "language": "MATLAB",618   "lines": 103,619   "truncated": false,620   "block": 6,621   "row": 12332622  },623  {624   "path": "R1R2s/demo_gpuJointR1R2starMapping_invivo.m",625   "sha256": "6f5e271515e97440127ae73f40a7b79fcc41098c1241399e7419ffbe0b5d5920",626   "language": "MATLAB",627   "lines": 100,628   "truncated": false,629   "block": 6,630   "row": 13015631  },632  {633   "path": "R1R2s/gpuJointR1R2starMapping.m",634   "sha256": "f5748b62b28680bf04a9d9c1b45ee04e78424ab795fca1f36b3de396f1d5bf15",635   "language": "MATLAB",636   "lines": 624,637   "truncated": false,638   "block": 6,639   "row": 18954640  },641  {642   "path": "R1R2s/private/model_jointR1R2s_singlecompartment.m",643   "sha256": "fbadd348915c6572180afa439165c20b682bc843c34dc07866368b3845918c24",644   "language": "MATLAB",645   "lines": 14,646   "truncated": false,647   "block": 6,648   "row": 3774649  },650  {651   "path": "R1R2s/sandbox/MEDI_spatial_tv_wCSF.m",652   "sha256": "0816792fb1b6852f6d11214a9486073aa39b3697eb15d3a000bf37376cfad075",653   "language": "MATLAB",654   "lines": 167,655   "truncated": false,656   "block": 6,657   "row": 16262658  },659  {660   "path": "R1R2s/sandbox/gpuJointR1R2starChiMapping.m",661   "sha256": "b82fe1391966ce853c7d4fa4947a24682325779df6b231b79984b589a9fbca01",662   "language": "MATLAB",663   "lines": 573,664   "truncated": false,665   "block": 6,666   "row": 18925667  },668  {669   "path": "R2star/demo_gpuR2starMapping_NoisePropagation.m",670   "sha256": "7dfd2f4d0b465836206e63d5ecec75589b67774766f09cbea877a0380594000d",671   "language": "MATLAB",672   "lines": 97,673   "truncated": false,674   "block": 6,675   "row": 11682676  },677  {678   "path": "R2star/demo_gpuR2starMapping_invivo.m",679   "sha256": "280b9835ff06130caea35b1167eba6a18592c8ad22ccd25826dba7bf5ee35d97",680   "language": "MATLAB",681   "lines": 88,682   "truncated": false,683   "block": 6,684   "row": 12313685  },686  {687   "path": "R2star/gpuR2starMapping.m",688   "sha256": "a64e2bd2d9951e7a3d64711fb715a4d9af9d603aef35cbd38f569799579d4632",689   "language": "MATLAB",690   "lines": 533,691   "truncated": false,692   "block": 6,693   "row": 18714694  },695  {696   "path": "R2star/private/model_R2s_singlecompartment.m",697   "sha256": "afcb0dcb2cd23c6b16ec882e5066c96ad797b1850f37fe3b4866db900df4a7fe",698   "language": "MATLAB",699   "lines": 10,700   "truncated": false,701   "block": 6,702   "row": 2772703  },704  {705   "path": "README.md",706   "sha256": "09781ecd69619e391ab3d29b241b512d1af37f9a581d31e98305de92f61362ee",707   "language": "Text",708   "lines": 100,709   "truncated": false,710   "block": 8,711   "row": 10567712  },713  {714   "path": "SANDI/demo_gpuSANDI_NoisePropagation.m",715   "sha256": "8e6bb1376203bf4d8ecfc3fd167f4374bc10a6717429deb755254a4492f0d15a",716   "language": "MATLAB",717   "lines": 120,718   "truncated": false,719   "block": 6,720   "row": 13688721  },722  {723   "path": "SANDI/demo_invivo.m",724   "sha256": "920fa7ac58e2201489d72d69c0a336a9fa37bab984e8ac85fed27d97aec60af9",725   "language": "MATLAB",726   "lines": 77,727   "truncated": false,728   "block": 6,729   "row": 12904730  },731  {732   "path": "SANDI/gpuSANDI.m",733   "sha256": "f56b92266640fbc03f5ed1b568594d9ba5c126de526b42fe8eaeb8272fb3e158",734   "language": "MATLAB",735   "lines": 759,736   "truncated": false,737   "block": 6,738   "row": 19124739  },740  {741   "path": "SANDI/private/C_arrayfun.m",742   "sha256": "8aa905e388292a0fda3d9b594a28dfdc3d37d226a36da04f97884c22002a118b",743   "language": "MATLAB",744   "lines": 16,745   "truncated": false,746   "block": 6,747   "row": 2987748  },749  {750   "path": "SANDI/private/Csum_arrayfun.m",751   "sha256": "e5bcde2dac7e84931d846852a3ecf4f576919c14ce63b376bd4d995a6f8155bc",752   "language": "MATLAB",753   "lines": 35,754   "truncated": false,755   "block": 6,756   "row": 6233757  },758  {759   "path": "SANDI/private/diffusion_sphere_restricted_wide_Sl0_arrayfun.m",760   "sha256": "b35954818357799849bee43345ca7e17f53bbc7947d890cf8a10e13928218074",761   "language": "MATLAB",762   "lines": 36,763   "truncated": false,764   "block": 6,765   "row": 6557766  },767  {768   "path": "SANDI/private/signal_SANDI.m",769   "sha256": "926e53d18919244d4bf1ffd7d7e4a45d4ca840a59b5fbe53ae8e68466041025e",770   "language": "MATLAB",771   "lines": 3,772   "truncated": false,773   "block": 6,774   "row": 2379775  },776  {777   "path": "SANDI/sandbox/gpuSANDI_fromSANDIX.m",778   "sha256": "d6a2ccecf4ee612133d9b27e8b2b5e0e510e10c5bd6734f4828651e06061c84e",779   "language": "MATLAB",780   "lines": 737,781   "truncated": false,782   "block": 6,783   "row": 19097784  },785  {786   "path": "addpath_gacelle.m",787   "sha256": "d254b3c4cece434509830ea075c6c88616df8fec244a95a90a46779dbac43b22",788   "language": "MATLAB",789   "lines": 47,790   "truncated": false,791   "block": 6,792   "row": 8485793  },794  {795   "path": "docs/conf.py",796   "sha256": "6d81e8cf08b542e3c34b0eb29966709f799023a07de6d6256e1af5555c21e5b2",797   "language": "Python",798   "lines": 50,799   "truncated": false,800   "block": 6,801   "row": 29971802  },803  {804   "path": "examples/Example_monoexponential_FWD_GD.m",805   "sha256": "c36dc932a25d177eafc83ecd5f7bfeed2528419784a4f7bb4258cf2bdcecef9a",806   "language": "MATLAB",807   "lines": 32,808   "truncated": false,809   "block": 6,810   "row": 5402811  },812  {813   "path": "examples/Example_monoexponential_FWD_askadam_3D_Strategy1.m",814   "sha256": "a6c2ba4916fbb6c9aabc2512dca471a0b96de2394fbb39e2c7e5e7bb7b1d3d13",815   "language": "MATLAB",816   "lines": 31,817   "truncated": false,818   "block": 6,819   "row": 5795820  },821  {822   "path": "examples/Example_monoexponential_FWD_askadam_3D_Strategy2.m",823   "sha256": "93723b314a5d622795669e54975e7c94da5d41433f52160828deab5eb6a8633f",824   "language": "MATLAB",825   "lines": 43,826   "truncated": false,827   "block": 6,828   "row": 9332829  },830  {831   "path": "examples/Example_monoexponential_automem.m",832   "sha256": "224a92290d3051d2c83c94266fb53f17acaa0eb6f8e08916a447e095682bee0f",833   "language": "MATLAB",834   "lines": 80,835   "truncated": false,836   "block": 6,837   "row": 12648838  },839  {840   "path": "examples/Example_monoexponential_estimate_askadam.m",841   "sha256": "161e7f971efc9a65c374bdd5ddcee13a3186ea14d300c25596998f53457e044c",842   "language": "MATLAB",843   "lines": 76,844   "truncated": false,845   "block": 6,846   "row": 11748847  },848  {849   "path": "examples/Example_monoexponential_estimate_askadam_3D_Strategy1.m",850   "sha256": "0192af2acb9039360a67d3d993c046645bbe8eb1d774d6abe87bfcf5eae51b82",851   "language": "MATLAB",852   "lines": 82,853   "truncated": false,854   "block": 6,855   "row": 12440856  },857  {858   "path": "examples/Example_monoexponential_estimate_askadam_3D_Strategy2.m",859   "sha256": "3de34ef91fe21f219794a60d33d596f284495432b65acb80f87f270651567387",860   "language": "MATLAB",861   "lines": 82,862   "truncated": false,863   "block": 6,864   "row": 12411865  },866  {867   "path": "examples/Example_monoexponential_estimate_askadam_3D_wReg_Stra1.m",868   "sha256": "4e7e8a556b8d63d4879e44654477c18d5ce9ed5970f972ff8beaebd11ac9c4c8",869   "language": "MATLAB",870   "lines": 251,871   "truncated": false,872   "block": 6,873   "row": 17736874  },875  {876   "path": "examples/Example_monoexponential_estimate_askadam_3D_wReg_Stra2.m",877   "sha256": "2a15172c825f6cdc6037ff7e4ed6126fb3dbd0cb450d1b5a1b9072a4be97021c",878   "language": "MATLAB",879   "lines": 253,880   "truncated": false,881   "block": 6,882   "row": 17756883  },884  {885   "path": "examples/Example_monoexponential_estimate_mcmc.m",886   "sha256": "90df5f6c81903a288202e4f4fd36f6f6202f0a8a3ce46034028c4184191325e8",887   "language": "MATLAB",888   "lines": 79,889   "truncated": false,890   "block": 6,891   "row": 11956892  },893  {894   "path": "examples/Example_monoexponential_estimate_mcmc_MH.m",895   "sha256": "328ec9ff382afa065a49168e1b849233c0de59e950bdc47433d4f9d3cf5c6a02",896   "language": "MATLAB",897   "lines": 81,898   "truncated": false,899   "block": 6,900   "row": 12301901  },902  {903   "path": "examples/Example_monoexponential_estimate_mcmc_ensemble.m",904   "sha256": "cb3097c4ea50d83b37fa8effba3758bab16917c34b378000d24f07131f7c4fbb",905   "language": "MATLAB",906   "lines": 83,907   "truncated": false,908   "block": 6,909   "row": 12447910  },911  {912   "path": "examples/demo_convergence_usage.m",913   "sha256": "b6d3fac5cd64392d3ffdf156fa2c4e845626b74e6d2b8b18bc7ad67191dbe06c",914   "language": "MATLAB",915   "lines": 319,916   "truncated": false,917   "block": 6,918   "row": 18203919  },920  {921   "path": "examples/demo_convergence_usage2.m",922   "sha256": "f6f836c20b4efcfe8bef56081ac68aaec8fd61fd2b02dee2118a62b032a43328",923   "language": "MATLAB",924   "lines": 520,925   "truncated": false,926   "block": 6,927   "row": 18881928  },929  {930   "path": "mcmicro/demo_invivo.m",931   "sha256": "0441a2c51a6f9ec4d3a6c21cbdfb5032442bd25c3203e5378604cfef5d188b9c",932   "language": "MATLAB",933   "lines": 51,934   "truncated": false,935   "block": 6,936   "row": 10785937  },938  {939   "path": "mcmicro/demo_noise_propagation.m",940   "sha256": "a07dc02c78fcf76e071ed100a12603c6dd6fc342a9ab62269e8ba9768a40534d",941   "language": "MATLAB",942   "lines": 96,943   "truncated": false,944   "block": 6,945   "row": 12206946  },947  {948   "path": "mcmicro/demo_noise_propagation_wR2.m",949   "sha256": "8f103338c21ea8d54b6dee7ad4d8fee7f9b52c792071dcccc68594402cf74ae4",950   "language": "MATLAB",951   "lines": 84,952   "truncated": false,953   "block": 6,954   "row": 11607955  },956  {957   "path": "mcmicro/gpumcmicro.m",958   "sha256": "a68745e3d446320199e585823ea213debb309880cccaad2361f33754a3f1121f",959   "language": "MATLAB",960   "lines": 719,961   "truncated": false,962   "block": 6,963   "row": 19067964  },965  {966   "path": "mcmicro/private/diffusion_relaxation_spherical_mean_combine.m",967   "sha256": "6bdfc0f15a08f906cda2101595ab7acb7557c852905a54dcf5ba6df579990ea3",968   "language": "MATLAB",969   "lines": 34,970   "truncated": false,971   "block": 6,972   "row": 6200973  },974  {975   "path": "qsm/+MEDI_helper/SMV.m",976   "sha256": "5f700c6a6fda127ee266e9262db7c64064247f8eb2d0364bfb9a516068ef2d60",977   "language": "MATLAB",978   "lines": 31,979   "truncated": false,980   "block": 6,981   "row": 5492982  },983  {984   "path": "qsm/+MEDI_helper/compute_preconditioner.m",985   "sha256": "63d357109b1cad569fcb7f7b0cd2380b71ad28d25391041fc548391e64917dfb",986   "language": "MATLAB",987   "lines": 54,988   "truncated": false,989   "block": 6,990   "row": 9469991  },992  {993   "path": "qsm/+MEDI_helper/extract_CSF.m",994   "sha256": "1952316874150c8fdcb4a2107dae2207a84972fcc5302480e58d660c38280719",995   "language": "MATLAB",996   "lines": 142,997   "truncated": false,998   "block": 6,999   "row": 153391000  },1001  {1002   "path": "qsm/+MEDI_helper/fgrad.m",1003   "sha256": "23ac03d0ba17bde680676f220ec61d631cbb28fc3462ab532439dcd42a75b586",1004   "language": "MATLAB",1005   "lines": 82,1006   "truncated": false,1007   "block": 6,1008   "row": 122561009  },1010  {1011   "path": "qsm/+MEDI_helper/gradient_mask.m",1012   "sha256": "0184c36a20f9af958f1d1053403770c084d2d11787f1ffea3c189ffde8dd817b",1013   "language": "MATLAB",1014   "lines": 26,1015   "truncated": false,1016   "block": 6,1017   "row": 57881018  },1019  {1020   "path": "qsm/+MEDI_helper/sphere_kernel.m",1021   "sha256": "2aa17612f51e5134a158110c9b437f3874e330f02a161de0d36e1524920380c7",1022   "language": "MATLAB",1023   "lines": 65,1024   "truncated": false,1025   "block": 6,1026   "row": 101091027  },1028  {1029   "path": "qsm/demo_gpuPDF_invivo.m",1030   "sha256": "376fa7ebabbd81bab79b222873e928d048e5f89609f6938c53e10ea8aa6c0a08",1031   "language": "MATLAB",1032   "lines": 80,1033   "truncated": false,1034   "block": 6,1035   "row": 123711036  },1037  {1038   "path": "qsm/gpuPDF.m",1039   "sha256": "57b5865164ce3cf6832084a5ab53d99e4867cebd9078b161aac0421e1f410ce1",1040   "language": "MATLAB",1041   "lines": 572,1042   "truncated": false,1043   "block": 6,1044   "row": 189181045  },1046  {1047   "path": "qsm/gpumcTFI.m",1048   "sha256": "4bb82308908de6591a2a3f40f0c963cda63921af4a876a64a6e6ac85507ac808",1049   "language": "MATLAB",1050   "lines": 838,1051   "truncated": false,1052   "block": 6,1053   "row": 192041054  },1055  {1056   "path": "qsm/private/R2star_trapezoidal.m",1057   "sha256": "7b9ed1032f644c1b29c1c8964c3df6bd6896b04227156e26c76c103bf01684cf",1058   "language": "MATLAB",1059   "lines": 24,1060   "truncated": false,1061   "block": 6,1062   "row": 52821063  },1064  {1065   "path": "qsm/private/check_padsize.m",1066   "sha256": "3eda0b6dba2aed0ce41777468f04e857f20f6dae0cfa6e9bf03ed53c57fd549c",1067   "language": "MATLAB",1068   "lines": 171,1069   "truncated": false,1070   "block": 6,1071   "row": 161361072  },1073  {1074   "path": "qsm/private/crop_padding.m",1075   "sha256": "23c4267aea8ea9099f779e7fff2c2a1b9e7ccf09ec9a8af09406f742a55f5a0a",1076   "language": "MATLAB",1077   "lines": 16,1078   "truncated": false,1079   "block": 6,1080   "row": 38331081  },1082  {1083   "path": "qsm/private/dipole_kernel.m",1084   "sha256": "8dcaeef19ad8ebb48c8a2310ac9442e00cb19f12acb4b2def24f238e7b831a24",1085   "language": "MATLAB",1086   "lines": 31,1087   "truncated": false,1088   "block": 6,1089   "row": 64781090  },1091  {1092   "path": "qsm/sandbox/(backup)gpumcTFI.m",1093   "sha256": "0add8ab626c793679b069667535d898b96a3042f24e56064e7a2fc0b6de8523f",1094   "language": "MATLAB",1095   "lines": 1349,1096   "truncated": false,1097   "block": 6,1098   "row": 193651099  },1100  {1101   "path": "qsm/sandbox/(backup2)gpumcTFI.m",1102   "sha256": "0a66b82140895ee745051f559ff180954bc1595d140b0603095296ccbb5efb7c",1103   "language": "MATLAB",1104   "lines": 1362,1105   "truncated": false,1106   "block": 6,1107   "row": 193661108  },1109  {1110   "path": "qsm/sandbox/(backup20260729)gpumcTFI.m",1111   "sha256": "93f6d8c1ef01d33df4965c2310b265ca72c5e73dfd00be1d17f246d895724110",1112   "language": "MATLAB",1113   "lines": 784,1114   "truncated": false,1115   "block": 6,1116   "row": 191611117  },1118  {1119   "path": "qsm/sandbox/demo_gpuTFIR2star_invivo.m",1120   "sha256": "f4bd7dec5054ef94f0ff03ff632bd37f91fd74c129bf28f7ebd83f0b15412a7e",1121   "language": "MATLAB",1122   "lines": 114,1123   "truncated": false,1124   "block": 6,1125   "row": 143331126  },1127  {1128   "path": "qsm/sandbox/demo_gpuTFI_invivo.m",1129   "sha256": "030df6113c7723b309c6acfce5eeea8990ed7f9599698782906c85a4b2c0d9c4",1130   "language": "MATLAB",1131   "lines": 113,1132   "truncated": false,1133   "block": 6,1134   "row": 142121135  },1136  {1137   "path": "qsm/sandbox/demo_gpumcTFI_invivo.m",1138   "sha256": "efcca9e53fa34dd496f0a510025ad75eca8c6131646dbd9be792c0d89e87e241",1139   "language": "MATLAB",1140   "lines": 141,1141   "truncated": false,1142   "block": 6,1143   "row": 159191144  },1145  {1146   "path": "qsm/sandbox/estimate_noise_map.m",1147   "sha256": "3453e15f2b3bfeb82909725f6a27f3de5b55db4a65dafd61111bbdb831d682e1",1148   "language": "MATLAB",1149   "lines": 118,1150   "truncated": false,1151   "block": 6,1152   "row": 152861153  },1154  {1155   "path": "qsm/sandbox/gpuMETFI.m",1156   "sha256": "c1029f5a8e94afcdd7244e358b1f767650273a661cb3ec09a0b7ec79f60a8cd3",1157   "language": "MATLAB",1158   "lines": 1331,1159   "truncated": false,1160   "block": 6,1161   "row": 193601162  },1163  {1164   "path": "qsm/sandbox/gpuMETFIv2.m",1165   "sha256": "71cbd6adc1e9b3d5d420e8640ee47d239717ab35ac06f45c65f31858381c0ebd",1166   "language": "MATLAB",1167   "lines": 1349,1168   "truncated": false,1169   "block": 6,1170   "row": 193641171  },1172  {1173   "path": "qsm/sandbox/gpuTFI.m",1174   "sha256": "65546b209a3e3be3632583614ed56d5a9d3dbf1484ac4185841c60361cdec1ef",1175   "language": "MATLAB",1176   "lines": 1292,1177   "truncated": false,1178   "block": 6,1179   "row": 193551180  },1181  {1182   "path": "qsm/sandbox/gpuTFIR2star.m",1183   "sha256": "8576787d156f45f57a92d61e51c5f593e58b11e5f65c57a6ca4f9300b258243c",1184   "language": "MATLAB",1185   "lines": 1495,1186   "truncated": false,1187   "block": 6,1188   "row": 193931189  },1190  {1191   "path": "qsm/sandbox/gpuTFIS0R2star.m",1192   "sha256": "f758c82a09261671bb9dfdefd11669285319fbc8f15bb67a3c50c63c13a9ebf0",1193   "language": "MATLAB",1194   "lines": 1505,1195   "truncated": false,1196   "block": 6,1197   "row": 193941198  },1199  {1200   "path": "recon/apply_sense_2D.m",

Showing the first 1,200 of 1929 lines. Download the file for the rest.