Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__kharchenkolab__conos.json390 linesDownload Raw Back to 67
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/kharchenkolab/conos",4 "url": "https://github.com/kharchenkolab/conos",5 "host": "github.com",6 "commit": "e656464d7063550340647f11230ce066cddf3868",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE.md",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE.md",13   "sha256": "8ceb4b9ee5adedde47b31e975c1d90c73ad27b6b165a1dcd80c7c545eb65b903",14   "language": "License",15   "lines": 674,16   "truncated": false,17   "block": 1,18   "row": 223419  },20  {21   "path": "R/RcppExports.R",22   "sha256": "016dd9cd298f8910daaafe73f30fe0160a98cdc207cb0cd4878eb2bc41b02c4d",23   "language": "R",24   "lines": 91,25   "truncated": false,26   "block": 8,27   "row": 300328  },29  {30   "path": "R/access_wrappers.R",31   "sha256": "91eced2acb8dcb3ba162ca50a76657be8f8a32fa6ad07e0e51201924c21d86ae",32   "language": "R",33   "lines": 377,34   "truncated": false,35   "block": 8,36   "row": 429737  },38  {39   "path": "R/communities.R",40   "sha256": "35e9a19b335b3021bcafcb2d4b04ca399d4618752e0035b30289a9b198bd2cae",41   "language": "R",42   "lines": 189,43   "truncated": false,44   "block": 8,45   "row": 372346  },47  {48   "path": "R/conclass.R",49   "sha256": "836ca9b0e172142ef57c0c91e5fb554abb426fb5ec6603ec6bbb25980479090e",50   "language": "R",51   "lines": 1109,52   "truncated": false,53   "block": 8,54   "row": 517255  },56  {57   "path": "R/conos.R",58   "sha256": "af28c1fca2894acbb0154401e253b723c8e63a1c73633f2e2d444f9523c24717",59   "language": "R",60   "lines": 1225,61   "truncated": false,62   "block": 8,63   "row": 512964  },65  {66   "path": "R/data.R",67   "sha256": "781df8b9380491c8ad745eebcb217ff8ebe9e715554c354578df961eac890794",68   "language": "R",69   "lines": 5,70   "truncated": false,71   "block": 8,72   "row": 127673  },74  {75   "path": "R/de_functions.R",76   "sha256": "9035ef7c19c4b8e0aab0118e97381c4365e6bfe454f35a7fd0f24db4bf5b17a6",77   "language": "R",78   "lines": 558,79   "truncated": false,80   "block": 8,81   "row": 491182  },83  {84   "path": "R/graph_embedding.R",85   "sha256": "d02c15aefc4566fc98c50d217d3d665b3081dbdef1303bc473096dc0486666e5",86   "language": "R",87   "lines": 88,88   "truncated": false,89   "block": 8,90   "row": 287591  },92  {93   "path": "R/integrations.R",94   "sha256": "b0c47f4c335a888e2992455209153d3759e9ba623d6e7d3cc7aea5908663af48",95   "language": "R",96   "lines": 618,97   "truncated": false,98   "block": 8,99   "row": 4977100  },101  {102   "path": "R/largeVis.R",103   "sha256": "619dbb01271c355ea7e0ff8821a7a1ed64e2b5c2b5d7f78b5d8cd8bacd71d113",104   "language": "R",105   "lines": 185,106   "truncated": false,107   "block": 8,108   "row": 4002109  },110  {111   "path": "R/plot.R",112   "sha256": "24ceea107c913242696af307249b9ec3a1555fbff2ca0b0d73c91bd6f921ad70",113   "language": "R",114   "lines": 636,115   "truncated": false,116   "block": 8,117   "row": 4960118  },119  {120   "path": "README.md",121   "sha256": "a0a5605d0b6735e068144cc4109f1d94cc1e0df2787a1365681f774b3ff9092f",122   "language": "Text",123   "lines": 242,124   "truncated": false,125   "block": 8,126   "row": 10786127  },128  {129   "path": "data-raw/create_rdata_file.R",130   "sha256": "f3b6320cb4547187c7120a77db6fd718895cf20aef43ff6c585dd8edc14aed70",131   "language": "R",132   "lines": 20,133   "truncated": false,134   "block": 8,135   "row": 1451136  },137  {138   "path": "doc/adjust_alignment_strength.R",139   "sha256": "d456ace12ef37f067833b01f5ac24166433f1832e4517af1aa4fa80873e2634b",140   "language": "R",141   "lines": 77,142   "truncated": false,143   "block": 8,144   "row": 2752145  },146  {147   "path": "doc/adjust_alignment_strength.Rmd",148   "sha256": "79a6c282d88c7878b707eaf556b0395c822fa483692f9fcf8689d625c788b763",149   "language": "R",150   "lines": 154,151   "truncated": false,152   "block": 8,153   "row": 3471154  },155  {156   "path": "doc/integrating_rnaseq_atacseq.R",157   "sha256": "f96672493367d4ab5c5925012680afce442c6bc3d7cf60041f89f5131c901fb9",158   "language": "R",159   "lines": 43,160   "truncated": false,161   "block": 8,162   "row": 2086163  },164  {165   "path": "doc/integrating_rnaseq_atacseq.Rmd",166   "sha256": "664b1b24e57a99cf9b2c8aaee9ca9e5c2946479e7970b4660a54f872729c6c9a",167   "language": "R",168   "lines": 81,169   "truncated": false,170   "block": 8,171   "row": 2574172  },173  {174   "path": "doc/scanpy_integration.R",175   "sha256": "1644412d0438318b13b4c0fa6bedb8c0de5c43a0b70c1592ef8e75b2b188718a",176   "language": "R",177   "lines": 43,178   "truncated": false,179   "block": 8,180   "row": 1998181  },182  {183   "path": "doc/scanpy_integration.Rmd",184   "sha256": "e5e3ffc280801538d1b8039b08b89ad1a90b1c888e0b13149b18b8c020a9b4bd",185   "language": "R",186   "lines": 120,187   "truncated": false,188   "block": 8,189   "row": 3136190  },191  {192   "path": "doc/walkthrough.R",193   "sha256": "ee74f740398f07631e5e9e38bd11dfb8cd714df73f934039d9fbd064e6f110ab",194   "language": "R",195   "lines": 199,196   "truncated": false,197   "block": 8,198   "row": 4080199  },200  {201   "path": "doc/walkthrough.Rmd",202   "sha256": "98eeacaf8b12051acb305681ddc2a611ecb6a017eb555cb62de20c2de6668d5d",203   "language": "R",204   "lines": 697,205   "truncated": false,206   "block": 8,207   "row": 4927208  },209  {210   "path": "inst/scanpy_integration.ipynb",211   "sha256": "2e61a27647086b5e2cd37d3961b1d7175682942022ecfe873ee503a361a04743",212   "language": "Jupyter",213   "lines": 86,214   "truncated": false,215   "block": 5,216   "row": 16330217  },218  {219   "path": "src/RcppExports.cpp",220   "sha256": "f8172b5583d292477bc75439dd5f5c04cd908179d549652cdea313d2b4949b63",221   "language": "C++",222   "lines": 377,223   "truncated": false,224   "block": 5,225   "row": 4833226  },227  {228   "path": "src/Rjnmf.cpp",229   "sha256": "f6705dd2d25b4a58fb2ab3a8ce34803997c8bb1f7e0f2a861a7a40b511542bf1",230   "language": "C++",231   "lines": 116,232   "truncated": false,233   "block": 5,234   "row": 2712235  },236  {237   "path": "src/adjustedRand.cpp",238   "sha256": "5bbbc37e8061e59b150076252bf2f7506633f897c4b125c7a92dafc788375472",239   "language": "C++",240   "lines": 157,241   "truncated": false,242   "block": 5,243   "row": 3421244  },245  {246   "path": "src/checkfunctions.cpp",247   "sha256": "2df7a25a67c1bbf00228a7817ed53a5a32dff230f632fcc94ed7d019fff1ab96",248   "language": "C++",249   "lines": 32,250   "truncated": false,251   "block": 5,252   "row": 1209253  },254  {255   "path": "src/cpca.cpp",256   "sha256": "5a5336455296f358877c9bc127a896853a661c6ba400c794322a183d466554e2",257   "language": "C++",258   "lines": 102,259   "truncated": false,260   "block": 5,261   "row": 2299262  },263  {264   "path": "src/deltacut.cpp",265   "sha256": "2dcf8d0740f03b00b9c4f9bce0b2aa377599cd9d97e32424e577077b467077f9",266   "language": "C++",267   "lines": 647,268   "truncated": false,269   "block": 5,270   "row": 4840271  },272  {273   "path": "src/edgeFilter.cpp",274   "sha256": "747a5eb8f067303205bdf46bc68f6cea73423fc7f5452e94c157cb4024cd8d4a",275   "language": "C++",276   "lines": 60,277   "truncated": false,278   "block": 5,279   "row": 2070280  },281  {282   "path": "src/edge_rebalancing.cpp",283   "sha256": "98ac32bf08f019f868adb5e6bc0c138ff505024e6c0283651e15f5d8f2a984cf",284   "language": "C++",285   "lines": 48,286   "truncated": false,287   "block": 5,288   "row": 1944289  },290  {291   "path": "src/edgeweights.cpp",292   "sha256": "63e8cb61d3f40c0a4096dade34f92b8476ffea40845e6a2c404ec6852861a0cc",293   "language": "C++",294   "lines": 184,295   "truncated": false,296   "block": 5,297   "row": 3456298  },299  {300   "path": "src/gradients.cpp",301   "sha256": "0a6c5d5bda40163aa6f5838adc57d7e7f3d01b55caa7920c5e894a2ef33eec05",302   "language": "C++",303   "lines": 105,304   "truncated": false,305   "block": 5,306   "row": 3119307  },308  {309   "path": "src/graph_embedding.cpp",310   "sha256": "e0a58e0e04e7e0a70fcd98a20a92603ede464eb16973ea8321216a4376e75f05",311   "language": "C++",312   "lines": 342,313   "truncated": false,314   "block": 5,315   "row": 4269316  },317  {318   "path": "src/include/alias.h",319   "sha256": "30b13469f9fbe38c06c217e22be6d548cf1e30ea70e91e7279aa7c875ec7c62c",320   "language": "C/C++",321   "lines": 89,322   "truncated": false,323   "block": 5,324   "row": 6722325  },326  {327   "path": "src/include/gradients.h",328   "sha256": "1251da7ee1b1bf859b327458bc498c2506f372f126e9ca027330735b9147ffc5",329   "language": "C/C++",330   "lines": 66,331   "truncated": false,332   "block": 5,333   "row": 6964334  },335  {336   "path": "src/include/largeVis.h",337   "sha256": "c0c50ca0d5e2114bc370c9e42a481904ebecf7c0689047daae220ad38b3acaad",338   "language": "C/C++",339   "lines": 33,340   "truncated": false,341   "block": 5,342   "row": 5797343  },344  {345   "path": "src/largeVis.cpp",346   "sha256": "2dcf63e97e9d5a00ad5b56ff93774a54d0aead481190864c147bdcbeceae78bf",347   "language": "C++",348   "lines": 296,349   "truncated": false,350   "block": 5,351   "row": 4064352  },353  {354   "path": "src/propagate_labels.cpp",355   "sha256": "33ad53a5fabf8115c23d8f3aa1d79d2519aa26ed5461acdea6795dbf7e64b31f",356   "language": "C++",357   "lines": 249,358   "truncated": false,359   "block": 5,360   "row": 4038361  },362  {363   "path": "src/spcov.cpp",364   "sha256": "337ac915cabf27112e667c1be891684a1644399fa70fac31a025a58875fd93b7",365   "language": "C++",366   "lines": 26,367   "truncated": false,368   "block": 5,369   "row": 1201370  },371  {372   "path": "tests/testthat.R",373   "sha256": "813c6f1bc8af5a380e9a38dad58424047a7ede172a69b299d52f85a12af1ad37",374   "language": "R",375   "lines": 3,376   "truncated": false,377   "block": 8,378   "row": 1259379  },380  {381   "path": "tests/testthat/test_functions.R",382   "sha256": "98185f248da02d1317aaf0de4c99017e844bbb9c7f906c504bd5a8b69a82cfa0",383   "language": "R",384   "lines": 47,385   "truncated": false,386   "block": 8,387   "row": 1706388  }389 ]390}