OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/samuel-book/stroke_outcome",4 "url": "https://github.com/samuel-book/stroke_outcome/",5 "host": "github.com",6 "commit": "124a07d79d7dab64911f7f8725c430e0756e8599",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "1fe617c020dbb860b1c98770cb25402c86a9961c366d594b0f509e37e82435e2",14 "language": "License",15 "lines": 21,16 "truncated": false,17 "block": 20,18 "row": 867719 },20 {21 "path": "README.md",22 "sha256": "1bdaaa207f316cdd0f167b8ffb00960c6c578fd28b22070c5454efb2c5da90e9",23 "language": "Text",24 "lines": 10,25 "truncated": false,26 "block": 21,27 "row": 282728 },29 {30 "path": "admission_prediction/01_msoa_regression.ipynb",31 "sha256": "495b6922877c54b33cbd6ed9c0e76a5e45d2a4c56f9e4927b0601eeddbd9f3be",32 "language": "Jupyter",33 "lines": 177,34 "truncated": false,35 "block": 20,36 "row": 796037 },38 {39 "path": "bonus_notebooks/data_sources_cheatsheet.ipynb",40 "sha256": "de257f34233476610c41e77aa705bf2f36c5bd78810a13b8f584f006b6fc4097",41 "language": "Jupyter",42 "lines": 369,43 "truncated": false,44 "block": 20,45 "row": 836946 },47 {48 "path": "bonus_notebooks/geography_maths.ipynb",49 "sha256": "0d3a0fcd8b955d84b37fd9e6d9e6b53aadcf55561a45f16fd87a37aa4f4b3191",50 "language": "Jupyter",51 "lines": 885,52 "truncated": false,53 "block": 20,54 "row": 851955 },56 {57 "path": "bonus_notebooks/mRS_datasets.ipynb",58 "sha256": "7a8f2a9c31e0ba975a38bcf28dacd2af520f1663845438ff2c45d896ecf35a59",59 "language": "Jupyter",60 "lines": 700,61 "truncated": false,62 "block": 20,63 "row": 851664 },65 {66 "path": "bonus_notebooks/mRS_outcomes_predict.ipynb",67 "sha256": "9e9a88fc53e544b67a3b37ea29e46f556d16eda304d9184ebe41edd8a6f0e7ed",68 "language": "Jupyter",69 "lines": 595,70 "truncated": false,71 "block": 20,72 "row": 847973 },74 {75 "path": "bonus_notebooks/mRS_outcomes_uncertainty.ipynb",76 "sha256": "cf790428d0096353b0acd594e726c75fc9ec046491df4337066d777f99b5b3ba",77 "language": "Jupyter",78 "lines": 374,79 "truncated": false,80 "block": 20,81 "row": 835082 },83 {84 "path": "bonus_notebooks/scale_dist.ipynb",85 "sha256": "58f3d99b3f72c18def505dc0e4173b6b62842d2357a95332fd3e6501609639d9",86 "language": "Jupyter",87 "lines": 207,88 "truncated": false,89 "block": 20,90 "row": 806491 },92 {93 "path": "bonus_notebooks/uncertainty.ipynb",94 "sha256": "b4ac7ec4f8e20bba580582376754d3d75fbbe9bdcd10691bcb621fd56aad61be",95 "language": "Jupyter",96 "lines": 132,97 "truncated": false,98 "block": 20,99 "row": 7837100 },101 {102 "path": "bonus_notebooks/weighted_combo.ipynb",103 "sha256": "f2c78a169b892083b4f99f5a613c7093c696e0d95eb5165cee44b98487720e5e",104 "language": "Jupyter",105 "lines": 352,106 "truncated": false,107 "block": 20,108 "row": 8291109 },110 {111 "path": "definitions_reference/paper.ipynb",112 "sha256": "c2e51678a5b83777b994de081f8fee9a6ae78543e600a3cc453c607400233d4f",113 "language": "Jupyter",114 "lines": 176,115 "truncated": false,116 "block": 20,117 "row": 8073118 },119 {120 "path": "dichotomised_outcome/clinical_outcome.py",121 "sha256": "d235e5c507b6b9495e5dc5b57f1883287a047d67d4d785aa6585a4ecf19cdc17",122 "language": "Python",123 "lines": 404,124 "truncated": false,125 "block": 20,126 "row": 20924127 },128 {129 "path": "dichotomised_outcome/demo.ipynb",130 "sha256": "61e9185a03b2cb0ddcb8897bd8b2e020fa20961b6d887111a09ddf6749430a42",131 "language": "Jupyter",132 "lines": 109,133 "truncated": false,134 "block": 20,135 "row": 7833136 },137 {138 "path": "england_wales/01_model_outcomes.ipynb",139 "sha256": "10289036dd556a585e8929120e7ac9abb35658aac8695b074a687f293a6079d1",140 "language": "Jupyter",141 "lines": 418,142 "truncated": false,143 "block": 20,144 "row": 8389145 },146 {147 "path": "england_wales/01c_weighted_outcomes.ipynb",148 "sha256": "ee892c697e9cc7b92702b6f45f4304b02efe6812d57144c262d986e8f50f8fba",149 "language": "Jupyter",150 "lines": 238,151 "truncated": false,152 "block": 20,153 "row": 8151154 },155 {156 "path": "england_wales/01d_weighted_outcomes_mrs_dists.ipynb",157 "sha256": "a5a24ee4d6f9625203f067be2f469b5600f97d870aa7d447a5efd82420292b7a",158 "language": "Jupyter",159 "lines": 473,160 "truncated": false,161 "block": 20,162 "row": 8438163 },164 {165 "path": "england_wales/02_lsoa_analysis_added_utility.ipynb",166 "sha256": "5ebbdaa612899b40d919583104cb59e3884ceb8553cf62b128a062dd36b9615c",167 "language": "Jupyter",168 "lines": 470,169 "truncated": false,170 "block": 20,171 "row": 8391172 },173 {174 "path": "england_wales/03_national_mrs_dists.ipynb",175 "sha256": "40f6c37336c9f0134ffc9f235dd48c8640cc91875a2573b7d9a0ef7d4c12e77d",176 "language": "Jupyter",177 "lines": 354,178 "truncated": false,179 "block": 20,180 "row": 8302181 },182 {183 "path": "england_wales/04_outlier_areas.ipynb",184 "sha256": "7ffa28ed672532d3a62e29a95cb8f2751d827385bd1b157cd777350c2cf6e775",185 "language": "Jupyter",186 "lines": 691,187 "truncated": false,188 "block": 20,189 "row": 8481190 },191 {192 "path": "england_wales/utilities/clinical_outcome.py",193 "sha256": "894fa44f2defa12a79ed9aad4e273cda457d987ba34c20b6922934e03fb5b12c",194 "language": "Python",195 "lines": 375,196 "truncated": false,197 "block": 20,198 "row": 21174199 },200 {201 "path": "general_results/01b_population.ipynb",202 "sha256": "d241165499c0cb03b3d79a49bf3aaa6eb86fd72886883f8371ba98b0521865f2",203 "language": "Jupyter",204 "lines": 350,205 "truncated": false,206 "block": 20,207 "row": 8161208 },209 {210 "path": "general_results/04_matrix.ipynb",211 "sha256": "5213e88ec5cd62a3d63c1c118f05087d07a2164f7d97cfdd2aad6e0071f1e129",212 "language": "Jupyter",213 "lines": 489,214 "truncated": false,215 "block": 20,216 "row": 8374217 },218 {219 "path": "general_results/04b_matrix_maths.ipynb",220 "sha256": "fa2cb8c57dfec0e762b1fc088fd5c598a90244e088b9ae2f138ca0d53648af22",221 "language": "Jupyter",222 "lines": 650,223 "truncated": false,224 "block": 20,225 "row": 8467226 },227 {228 "path": "general_results/05_geography.ipynb",229 "sha256": "87e14aea4ecfd1230f3cf823d568d8de84922627dbffb698b2e1266356ba2ca4",230 "language": "Jupyter",231 "lines": 405,232 "truncated": false,233 "block": 20,234 "row": 8365235 },236 {237 "path": "general_results/05_geography_outcomes.ipynb",238 "sha256": "eafb01401f43837705744fda31b356633488254a54ae01841b2ff235884c647c",239 "language": "Jupyter",240 "lines": 625,241 "truncated": false,242 "block": 20,243 "row": 8460244 },245 {246 "path": "general_results/05c_geography_outcomes_plots.ipynb",247 "sha256": "c82e6a9b0c66b4aeeb4311f223e309b1099eec9f54103702fcc606c3fe4c80b6",248 "language": "Jupyter",249 "lines": 525,250 "truncated": false,251 "block": 20,252 "row": 8462253 },254 {255 "path": "general_results/geography_calc.py",256 "sha256": "40bec5b9e3b74a8800a6636c0655c59aee4129179bf540c5e0974e46eb35a32d",257 "language": "Python",258 "lines": 382,259 "truncated": false,260 "block": 20,261 "row": 20653262 },263 {264 "path": "general_results/geography_plot.py",265 "sha256": "cf2d84ed04a945f29a98c5959ac567beb85366212fb1c7341266cc541cdafef3",266 "language": "Python",267 "lines": 347,268 "truncated": false,269 "block": 20,270 "row": 20876271 },272 {273 "path": "mRS_dist_resample_summary.ipynb",274 "sha256": "0c2e302f066be04f68263675a5f7ef5e935eff8a07fec46e769652902ea90d3a",275 "language": "Jupyter",276 "lines": 162,277 "truncated": false,278 "block": 20,279 "row": 8106280 },281 {282 "path": "old/03_demo_of_outcome_model.ipynb",283 "sha256": "666ffc8d76521c0958181cdf7177545927e2fe8c0be47df23ed623cdb1ff5ed7",284 "language": "Jupyter",285 "lines": 401,286 "truncated": false,287 "block": 20,288 "row": 8342289 },290 {291 "path": "old/06_show_outcome_model_code.ipynb",292 "sha256": "7171223347e4fe61c2cc907befce83aa775f758de86e76c4636fdc81e7904525",293 "language": "Jupyter",294 "lines": 10,295 "truncated": false,296 "block": 20,297 "row": 7621298 },299 {300 "path": "old/99_stroke_outcome_package_demo.ipynb",301 "sha256": "b660dc2b4fbb5bf774ca114371588d8aedc16a7280f49da796a915fa412768d8",302 "language": "Jupyter",303 "lines": 99,304 "truncated": false,305 "block": 20,306 "row": 7803307 },308 {309 "path": "outcome_model_methods/01_mrs_dist_derivation.ipynb",310 "sha256": "e5fd31c85a8b35003f77293a3c1cf99f7e03b6aae40ee4a7402bcf0d8526eed6",311 "language": "Jupyter",312 "lines": 688,313 "truncated": false,314 "block": 20,315 "row": 8536316 },317 {318 "path": "outcome_model_methods/01b_excess_deaths.ipynb",319 "sha256": "cfde3e2fa8e6cf962213562f96b4b85258d440a1679bb0129c7b358179ba34c1",320 "language": "Jupyter",321 "lines": 445,322 "truncated": false,323 "block": 20,324 "row": 8444325 },326 {327 "path": "outcome_model_methods/01c_extrapolate_time_zero.ipynb",328 "sha256": "bfacb252b519c94566c8dd4ac789a66b9370d2fff109d85e740c943d17cd02f9",329 "language": "Jupyter",330 "lines": 370,331 "truncated": false,332 "block": 20,333 "row": 8409334 },335 {336 "path": "outcome_model_methods/02_probs_with_time.ipynb",337 "sha256": "de062074ae592e534089047d6b50b440d606731c2a37e2d7915498742e7f0bb9",338 "language": "Jupyter",339 "lines": 382,340 "truncated": false,341 "block": 20,342 "row": 8367343 },344 {345 "path": "outcome_model_methods/02b_formulae.ipynb",346 "sha256": "226fc8706c5e5608fbe7e523203323b485753f5d126af2ab14d37c3db45122d9",347 "language": "Jupyter",348 "lines": 339,349 "truncated": false,350 "block": 20,351 "row": 8385352 },353 {354 "path": "outcome_model_methods/02c_extra_maths.ipynb",355 "sha256": "68ec23f85db45cf17508c23ff9c019cf03cd9139ec409f4ac1f744dd72c83c44",356 "language": "Jupyter",357 "lines": 253,358 "truncated": false,359 "block": 20,360 "row": 8152361 },362 {363 "path": "outcome_model_methods/03_probs_with_time_results.ipynb",364 "sha256": "57892061c7ad9f5fa351ee47f29a29a212d6e65d33a23e56ef91ec602debaa60",365 "language": "Jupyter",366 "lines": 281,367 "truncated": false,368 "block": 20,369 "row": 8099370 },371 {372 "path": "outcome_utilities/added_utility_between_dists.py",373 "sha256": "7919ca40f9e617d3ebf56d19171721442d81a998ad9097e9aafedf3582cc290f",374 "language": "Python",375 "lines": 130,376 "truncated": false,377 "block": 20,378 "row": 18050379 },380 {381 "path": "outcome_utilities/clinical_outcome.py",382 "sha256": "f4bbeadb6da53a001b85a43c6642ddfa13d4a1366e79eaffad8714fb93b43604",383 "language": "Python",384 "lines": 368,385 "truncated": false,386 "block": 20,387 "row": 21107388 },389 {390 "path": "outcome_utilities/dist_derive_plot.py",391 "sha256": "87115481a063356fa49372cb44e3a1e7d06f17d57d45987435439584e68d3512",392 "language": "Python",393 "lines": 1358,394 "truncated": false,395 "block": 21,396 "row": 364397 },398 {399 "path": "outcome_utilities/dist_plot.py",400 "sha256": "6c03b5dd49737258718b543dc4973f2983085842b189aff83467171f47f7dab9",401 "language": "Python",402 "lines": 491,403 "truncated": false,404 "block": 20,405 "row": 21613406 },407 {408 "path": "outcome_utilities/extrapolate_odds_ratio.py",409 "sha256": "3d28e1af01ef666daba0e14453f0d80dfec9700a7a8357eac675b0c347780afc",410 "language": "Python",411 "lines": 40,412 "truncated": false,413 "block": 20,414 "row": 14757415 },416 {417 "path": "outcome_utilities/mRS_datasets.py",418 "sha256": "0423036225ac193f6a6e76dbd68dd1791520e23029d8ef74e88119d67f988004",419 "language": "Python",420 "lines": 267,421 "truncated": false,422 "block": 20,423 "row": 20086424 },425 {426 "path": "outcome_utilities/plot_probs_with_time.py",427 "sha256": "ceb359335319899f2ab01fdfb8f40d68d09f1ac7e37774334123d63b1248bbc4",428 "language": "Python",429 "lines": 174,430 "truncated": false,431 "block": 20,432 "row": 18666433 },434 {435 "path": "outcome_utilities/probs_with_time.py",436 "sha256": "5ea84e404d1f77acd41283d30c175fa1e5efdd7192623719c1c0f70d6d95bb81",437 "language": "Python",438 "lines": 63,439 "truncated": false,440 "block": 20,441 "row": 15697442 },443 {444 "path": "outcome_utilities/scale_dist.py",445 "sha256": "0bfa22fce65710f773d11e6f405a0ac21bd7cacedbf88ee5a57dc2560b8af77e",446 "language": "Python",447 "lines": 42,448 "truncated": false,449 "block": 20,450 "row": 15164451 },452 {453 "path": "outcome_utilities/summary_outcome_resampling.ipynb",454 "sha256": "61b08482b8f43535f083d6e2066cd9d9cec5871ffc35db71dd8cd1fb64ed97aa",455 "language": "Jupyter",456 "lines": 923,457 "truncated": false,458 "block": 20,459 "row": 8518460 },461 {462 "path": "package_docs/demo_continuous_outcomes.ipynb",463 "sha256": "b74471cc6f5c1396aa93944c548dea8443131ffdf13b21963a1b620df9b46a47",464 "language": "Jupyter",465 "lines": 258,466 "truncated": false,467 "block": 20,468 "row": 8183469 },470 {471 "path": "package_docs/demo_discrete_outcomes.ipynb",472 "sha256": "7fe8bed246f9192732453728513547a024901465385f45dcadbdd79e06ca3ac2",473 "language": "Jupyter",474 "lines": 271,475 "truncated": false,476 "block": 20,477 "row": 8238478 },479 {480 "path": "package_docs/docs_continuous_outcome.ipynb",481 "sha256": "998b6e5e6a76bbb3d6cbf7e57c39c2b7bbe2c586485a8b9298f072c7409400cf",482 "language": "Jupyter",483 "lines": 402,484 "truncated": false,485 "block": 20,486 "row": 8453487 },488 {489 "path": "package_docs/docs_discrete_outcome.ipynb",490 "sha256": "211aeaf781f6294f29db6311c3ece8ba6d2ef90bb3bd3a993b0b0116835eb846",491 "language": "Jupyter",492 "lines": 388,493 "truncated": false,494 "block": 20,495 "row": 8476496 },497 {498 "path": "package_docs/images/continuous_outcome_figures.ipynb",499 "sha256": "c645a2ca733792c2a98b49e1ea8cc9157ee54ab9c35278acc1e00f7edd4666b6",500 "language": "Jupyter",501 "lines": 972,502 "truncated": false,503 "block": 20,504 "row": 8533505 },506 {507 "path": "package_docs/images/discrete_outcome_figures.ipynb",508 "sha256": "2c36d22dadc142593c385eabdd8913bb3bf55033ecb7ca69d10d493933714bd0",509 "language": "Jupyter",510 "lines": 1483,511 "truncated": false,512 "block": 20,513 "row": 8568514 },515 {516 "path": "package_docs/images/old_continuous_outcome_illustration.ipynb",517 "sha256": "94318e3d38b8c41425be7a9314798e7cdb3a615d6b4fb32bd1ecce1bded9d4fe",518 "language": "Jupyter",519 "lines": 1263,520 "truncated": false,521 "block": 20,522 "row": 8567523 }524 ]525}