OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/ptolmachev/simplifiedmodel_rcpg_swcpg_interaction",4 "url": "https://github.com/ptolmachev/SimplifiedModel_rCPG_swCPG_interaction",5 "host": "github.com",6 "commit": "a6c77427e6f0466ce91650a5e99c8c287e6d9674",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "ff350e3e6e24c6bf737e40dd20a25ac090b424f6373001e215528976c21b8633",14 "language": "License",15 "lines": 21,16 "truncated": false,17 "block": 1,18 "row": 210719 },20 {21 "path": "README.md",22 "sha256": "9530ccbcf3ecbb2cd2c06eb8f32c2137c86800680f68fdb8eefc94e33f77a012",23 "language": "Text",24 "lines": 38,25 "truncated": false,26 "block": 1,27 "row": 1180228 },29 {30 "path": "code/rCPGswCPG/Experiment.py",31 "sha256": "0d076bae71975828796dd5be77d3896066265af9c637cda376fa180f9b7a22dd",32 "language": "Python",33 "lines": 238,34 "truncated": false,35 "block": 1,36 "row": 883137 },38 {39 "path": "code/rCPGswCPG/Network.py",40 "sha256": "a514902954dff414a214e4f1931606a949a595de16ca117df371358bd6bf73c4",41 "language": "Python",42 "lines": 254,43 "truncated": false,44 "block": 1,45 "row": 832446 },47 {48 "path": "code/rCPGswCPG/construct_protocol.py",49 "sha256": "4c38bd93d55a8774127d8e961f3410e1e183ed9debeba297e80613a7cfca384e",50 "language": "Python",51 "lines": 14,52 "truncated": false,53 "block": 1,54 "row": 542055 },56 {57 "path": "code/rCPGswCPG/experiments/KF_lesioning_different_amps.py",58 "sha256": "f311f1b0f2d200618ba52f8b27847f7125087d54fafe8bcc53e9d4929e1e5a21",59 "language": "Python",60 "lines": 45,61 "truncated": false,62 "block": 1,63 "row": 632664 },65 {66 "path": "code/rCPGswCPG/experiments/lesioning_KF.py",67 "sha256": "1e08ed1ec7a413e18c21893c1d864136444845d8798f1554dbc986c0cc2e95ec",68 "language": "Python",69 "lines": 44,70 "truncated": false,71 "block": 1,72 "row": 663073 },74 {75 "path": "code/rCPGswCPG/experiments/prc_running_simulations.py",76 "sha256": "358af186fdbf82c989a72d4d186c2a56a0099446760c59228b6f87888acc39f7",77 "language": "Python",78 "lines": 155,79 "truncated": false,80 "block": 1,81 "row": 810582 },83 {84 "path": "code/rCPGswCPG/experiments/tau_v_sweep.py",85 "sha256": "c47df7ec62fc2685f08379df3338f4e411999602b13f72c3142c822d833be641",86 "language": "Python",87 "lines": 71,88 "truncated": false,89 "block": 1,90 "row": 666391 },92 {93 "path": "code/rCPGswCPG/experiments/variation_single_param.py",94 "sha256": "d985ade0d6dceb784783f9a912ee26038b722196ed327d2734a34de54fc67585",95 "language": "Python",96 "lines": 81,97 "truncated": false,98 "block": 1,99 "row": 7484100 },101 {102 "path": "code/rCPGswCPG/experiments/varying_arousal_drive.py",103 "sha256": "fe742aea0c4fe7f6f8ee6c1447d213a8fc725e39bace02d3cad40e09cccaa78e",104 "language": "Python",105 "lines": 39,106 "truncated": false,107 "block": 1,108 "row": 6389109 },110 {111 "path": "code/rCPGswCPG/model_params/config_loader.py",112 "sha256": "16f089ae33a624012cbfd7dec0125965ad31db14995b8da702fb67d92d619441",113 "language": "Python",114 "lines": 154,115 "truncated": false,116 "block": 1,117 "row": 7605118 },119 {120 "path": "code/rCPGswCPG/parameter_extraction/param_extraction_utils.py",121 "sha256": "3eeb04fe0ce51cba80bfd173979781f7aa21a4eb06f1bb420bf0516b55a405f5",122 "language": "Python",123 "lines": 205,124 "truncated": false,125 "block": 1,126 "row": 7955127 },128 {129 "path": "code/rCPGswCPG/plotting_figures/Fig4_exp_vs_sim_swallowing_and_breathing.py",130 "sha256": "1bde5a1ea0406e7b952909d4882a32161614c0a734fcaa2895f01ba48b20efe5",131 "language": "Python",132 "lines": 98,133 "truncated": false,134 "block": 1,135 "row": 7485136 },137 {138 "path": "code/rCPGswCPG/plotting_figures/Fig5_PRC_comparison.py",139 "sha256": "b9af9a03d6f403e940557a895428c931d2683a4c8c3410fbc2485b2f4eac0a26",140 "language": "Python",141 "lines": 146,142 "truncated": false,143 "block": 1,144 "row": 7781145 },146 {147 "path": "code/rCPGswCPG/plotting_figures/Fig6_Solitary_swallow_PIR/PIR_mechanism_solitary_swallow.py",148 "sha256": "9a840a7b449a8939299c63761f3e6cf39a8f6921ddaf236ce8efd7468beb0084",149 "language": "Python",150 "lines": 39,151 "truncated": false,152 "block": 1,153 "row": 5987154 },155 {156 "path": "code/rCPGswCPG/plotting_figures/Fig6_Solitary_swallow_PIR/PIR_solitary_swallow_phase_space_analysis.py",157 "sha256": "620266ec8186dfb8b5faa9fb63ece8e76aa90978f69a4d7acd6d2151b4177c27",158 "language": "Python",159 "lines": 210,160 "truncated": false,161 "block": 1,162 "row": 8369163 },164 {165 "path": "code/rCPGswCPG/plotting_figures/Fig6_Solitary_swallow_PIR/isolating_drives_to_SwHCO.py",166 "sha256": "c2964ce71cc9ae03a858e0e081d0db9eb27580a8cc01c9c1c4fe817b42a35f7d",167 "language": "Python",168 "lines": 66,169 "truncated": false,170 "block": 1,171 "row": 6611172 },173 {174 "path": "code/rCPGswCPG/plotting_figures/Fig7_apn_vs_eupn.py",175 "sha256": "c8bb9c9f8795dfb3f2969d7da8ce2130db2059155559508fb7fffd5a830f3efc",176 "language": "Python",177 "lines": 74,178 "truncated": false,179 "block": 1,180 "row": 7047181 },182 {183 "path": "code/rCPGswCPG/plotting_figures/Fig8_pathological_behavior.py",184 "sha256": "b6f1df42486e71db9418dbc0f6b3462ec2b379feb8346c1807748f72b31908cd",185 "language": "Python",186 "lines": 69,187 "truncated": false,188 "block": 1,189 "row": 6673190 },191 {192 "path": "code/rCPGswCPG/plotting_figures/Fig9_VNA_responses.py",193 "sha256": "9127e7c7aa473328ba15862b6dbf4d5f0e1aa2a9bad63b3517636a4bc6615ddc",194 "language": "Python",195 "lines": 69,196 "truncated": false,197 "block": 1,198 "row": 6908199 },200 {201 "path": "code/rCPGswCPG/plotting_figures/Fig9_effect_of_varying_the_variables.py",202 "sha256": "849ff643eed26c0b125b3d0de093b9758a352e15b9d90e0e9fd8c137626d1ec9",203 "language": "Python",204 "lines": 193,205 "truncated": false,206 "block": 1,207 "row": 8335208 },209 {210 "path": "code/rCPGswCPG/plotting_figures/plotting_PNA_VNA_Intact_different_amps.py",211 "sha256": "8fa506548adc49dd93c471d0da1a9cf5a2e64b54aed69267e6f54b59c4e59b3f",212 "language": "Python",213 "lines": 50,214 "truncated": false,215 "block": 1,216 "row": 6414217 },218 {219 "path": "code/rCPGswCPG/plotting_figures/plotting_PNA_VNA_KF_inh_different_amps.py",220 "sha256": "2a87fd626f373cda0701eac081b8e99aae8e4368e337ebdfff9c791bedde677a",221 "language": "Python",222 "lines": 50,223 "truncated": false,224 "block": 1,225 "row": 6409226 },227 {228 "path": "code/rCPGswCPG/plotting_figures/plotting_effect_of_varying_arousal_drive.py",229 "sha256": "fd539adf7bd64dfb10894a7b9dcf58f7dc55d08537941e1d51958443f58fc8fb",230 "language": "Python",231 "lines": 73,232 "truncated": false,233 "block": 1,234 "row": 6705235 },236 {237 "path": "code/rCPGswCPG/plotting_figures/plotting_utils.py",238 "sha256": "30d499189f2a0d0134c69a38ff2236471698235b74a8c60894fd2c03aed3ce55",239 "language": "Python",240 "lines": 126,241 "truncated": false,242 "block": 1,243 "row": 7278244 },245 {246 "path": "code/rCPGswCPG/prc_extraction/prc_extraction_subroutines/filtering_utils.py",247 "sha256": "b9279430c1d3f71156388c7ed7f54efc32fda1609050396a5c5ff09fb252bc83",248 "language": "Python",249 "lines": 64,250 "truncated": false,251 "block": 1,252 "row": 6319253 },254 {255 "path": "code/rCPGswCPG/prc_extraction/prc_extraction_subroutines/phase_extraction.py",256 "sha256": "3c7401211d252b1e1cd0aaad4ec7627e867a609c2917eccd041f22930c1eb4f0",257 "language": "Python",258 "lines": 112,259 "truncated": false,260 "block": 1,261 "row": 7103262 },263 {264 "path": "code/rCPGswCPG/prc_extraction/prc_extraction_subroutines/prc_extraction_linear_fit.py",265 "sha256": "d053411f1a9f53fede65aab67d24e026a9b760e4a098eb213a1c8177455e1cb9",266 "language": "Python",267 "lines": 66,268 "truncated": false,269 "block": 1,270 "row": 6783271 },272 {273 "path": "code/rCPGswCPG/prc_extraction/run_prc_extraction.py",274 "sha256": "1aafeacef21cf4b708ec9c9d02186422b30f55521399498f29325ca969439f45",275 "language": "Python",276 "lines": 85,277 "truncated": false,278 "block": 1,279 "row": 7281280 },281 {282 "path": "code/rCPGswCPG/protocols/__init__.py",283 "sha256": "775150f2168d8df4f0e5b3e248c1001f0cc927307994c923ee5e705e27f5a55b",284 "language": "Python",285 "lines": 1,286 "truncated": false,287 "block": 1,288 "row": 5108289 },290 {291 "path": "code/rCPGswCPG/protocols/protocols.py",292 "sha256": "447209fb88732af26c563188dce52c3cbef246187f5e5b8981124186aeb015a6",293 "language": "Python",294 "lines": 136,295 "truncated": false,296 "block": 1,297 "row": 7633298 },299 {300 "path": "code/rCPGswCPG/run_model.py",301 "sha256": "04f8299b00363a4c1d3e22c35252d28c17179803559aed5df3a5c76f83ccbd01",302 "language": "Python",303 "lines": 71,304 "truncated": false,305 "block": 1,306 "row": 6749307 },308 {309 "path": "code/rCPGswCPG/utils/__init__.py",310 "sha256": "c30cc8d0758ccf4154a7857ae971917f379a2b781a4149c88c3b2d1bc654a452",311 "language": "Python",312 "lines": 1,313 "truncated": false,314 "block": 1,315 "row": 5004316 },317 {318 "path": "code/rCPGswCPG/utils/gen_utils.py",319 "sha256": "6f77e0e6e399e6f6c1c87fa3c53e836667401bccead885aa7bdff990a2933a5b",320 "language": "Python",321 "lines": 45,322 "truncated": false,323 "block": 1,324 "row": 5790325 },326 {327 "path": "code/rCPGswCPG/utils/sp_utils.py",328 "sha256": "efc3b3b80f562e2a3bfef5be024dec36834e10b68ef1d83b9e86bc1db828b10f",329 "language": "Python",330 "lines": 146,331 "truncated": false,332 "block": 1,333 "row": 7533334 },335 {336 "path": "code/rCPGswCPG/utils/utils.py",337 "sha256": "622c0a3cd04ffa64fc4f8cf85d0e3e89f19ba39b60d0796f864ec4d042dd5d34",338 "language": "Python",339 "lines": 86,340 "truncated": false,341 "block": 1,342 "row": 6910343 },344 {345 "path": "code/setup.py",346 "sha256": "2a2cd6a73cd6d7b9baa5939c7a1faed32bbd34e3282df53dd1dee9f07b9b2e8e",347 "language": "Python",348 "lines": 24,349 "truncated": false,350 "block": 1,351 "row": 5540352 }353 ]354}