Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__holehouse-lab__pimms.json1038 linesDownload Raw Back to 6d
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/holehouse-lab/pimms",4 "url": "https://github.com/holehouse-lab/PIMMS/",5 "host": "github.com",6 "commit": "98c53c3406a77dc67dc5e5a3dbdbbb6a86275dde",7 "license": "LGPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "fc4af941eaae9792b61f7f8d3473678fc5580da4a69ba7bf84c7f8dfa021f4f9",14   "language": "License",15   "lines": 57,16   "truncated": false,17   "block": 10,18   "row": 616019  },20  {21   "path": "README.md",22   "sha256": "fc9b624afb70e0f00b29503e605b9463a397b5a0ce95e5e5261b089c629dfb3a",23   "language": "Text",24   "lines": 95,25   "truncated": false,26   "block": 10,27   "row": 1994928  },29  {30   "path": "build.sh",31   "sha256": "eddece76c1082eb3d288aabe01bfa63a15df2860ce63edc80f3cfac2160040a4",32   "language": "Shell",33   "lines": 23,34   "truncated": false,35   "block": 10,36   "row": 1930137  },38  {39   "path": "clean.sh",40   "sha256": "e06cced08b0140fd1fad4a87f6a1592a358fdbac2eed8bcd8cdf9da96860baf3",41   "language": "Shell",42   "lines": 29,43   "truncated": false,44   "block": 10,45   "row": 1933046  },47  {48   "path": "colab/pimms_phase_separation_demo.ipynb",49   "sha256": "e68d9270e5c1b094263631a1775e5732515e224466bb367678519937db7b9471",50   "language": "Jupyter",51   "lines": 166,52   "truncated": false,53   "block": 10,54   "row": 542155  },56  {57   "path": "demo_keyfiles/amphiphile_bilayer/build_bilayer_seed.py",58   "sha256": "34be2b4622d62899632c2680f96598d60b6ee1b9ec2b09b77814550f85545914",59   "language": "Python",60   "lines": 74,61   "truncated": false,62   "block": 10,63   "row": 1273164  },65  {66   "path": "demo_keyfiles/multiphase_core_shell/build_onion_seed.py",67   "sha256": "3e0105d014993f675c9c4c8b2b8e924f32c15384d5dac066cbeaac0b947f58fd",68   "language": "Python",69   "lines": 106,70   "truncated": false,71   "block": 10,72   "row": 1329773  },74  {75   "path": "demo_keyfiles/star_destroyer/build_star_destroyer.py",76   "sha256": "3ff88c3b4d2a5d1740f7adb69b4d9707cf6d544b5ff3fa4876b4d31a856db6a0",77   "language": "Python",78   "lines": 143,79   "truncated": false,80   "block": 10,81   "row": 1400682  },83  {84   "path": "demos/chains-on-a-surface_sims/build_surface_attach.ipynb",85   "sha256": "6ac6b9596419db0a2d808e9e55c45edf3b2acad24d3fbb1229d6cf32e11931c3",86   "language": "Jupyter",87   "lines": 199,88   "truncated": false,89   "block": 10,90   "row": 547491  },92  {93   "path": "demos/surface/build_surface.ipynb",94   "sha256": "89f8e9723f62d01d156f2046b8a107639fabf539ad6217bbd508f55751631c37",95   "language": "Jupyter",96   "lines": 74,97   "truncated": false,98   "block": 10,99   "row": 5010100  },101  {102   "path": "devtools/scripts/create_conda_env.py",103   "sha256": "b2e2aa552abf3847e9fb185ce3a9972fdca73028237bbb1ec78a73ff6b405dc6",104   "language": "Python",105   "lines": 95,106   "truncated": false,107   "block": 9,108   "row": 8996109  },110  {111   "path": "devtools/travis-ci/before_install.sh",112   "sha256": "4e2cc02ef47cb8ba3459f957ba80db55f516d18fcbea90d7a903a7ea78fa80d3",113   "language": "Shell",114   "lines": 41,115   "truncated": false,116   "block": 10,117   "row": 19368118  },119  {120   "path": "docs/conf.py",121   "sha256": "94e708eab6454fd438801b099e40cf4e2bebd202608022ced22363390008bb96",122   "language": "Python",123   "lines": 305,124   "truncated": false,125   "block": 10,126   "row": 15629127  },128  {129   "path": "docs/generate_keywords.py",130   "sha256": "35a433108b6c08f5a8ddabf217e3961b50aa4b956bded67ecf694296d39172ad",131   "language": "Python",132   "lines": 163,133   "truncated": false,134   "block": 10,135   "row": 13866136  },137  {138   "path": "pimms/CONFIG.py",139   "sha256": "5b2c908f55a277f71b8e3bc542b26f436f5217cf12c8c058f7b356d82cd4fbc1",140   "language": "Python",141   "lines": 506,142   "truncated": false,143   "block": 10,144   "row": 17511145  },146  {147   "path": "pimms/IO_utils.py",148   "sha256": "92c62df8c5df1f68efa918cfe987f19a56917e1d972b530905335facd03c3190",149   "language": "Python",150   "lines": 353,151   "truncated": false,152   "block": 10,153   "row": 15259154  },155  {156   "path": "pimms/__init__.py",157   "sha256": "f5ee22c341c06d46896924eda78207cec802aa6d9380f1a2fa12a772d294930e",158   "language": "Python",159   "lines": 28,160   "truncated": false,161   "block": 10,162   "row": 10604163  },164  {165   "path": "pimms/acceptance.py",166   "sha256": "18ac68e87a8c9cf880bbb07a3e7872fbc1b8accf7968aa3143a72a34e2a522e4",167   "language": "Python",168   "lines": 576,169   "truncated": false,170   "block": 10,171   "row": 16802172  },173  {174   "path": "pimms/analysis_IO.py",175   "sha256": "3fa66e6d7f70ff21cffac5bf6f97da65d070ce72633f59c80307a4cb88942da7",176   "language": "Python",177   "lines": 983,178   "truncated": false,179   "block": 10,180   "row": 17261181  },182  {183   "path": "pimms/analysis_general.py",184   "sha256": "87da574c0bc8b7a0a63ec95e57b699296eb250ae5492bf3828c881919097f9ab",185   "language": "Python",186   "lines": 123,187   "truncated": false,188   "block": 10,189   "row": 13513190  },191  {192   "path": "pimms/analysis_structures.py",193   "sha256": "834d8946c510cb59143c161e03f89371c3de9f00a56de2b6c76ac5935e06dd3d",194   "language": "Python",195   "lines": 496,196   "truncated": false,197   "block": 10,198   "row": 16380199  },200  {201   "path": "pimms/chain.py",202   "sha256": "92a89c9a23e30535e1fa81b434e58882a633ef9f9f763bae832420562f10b9c3",203   "language": "Python",204   "lines": 983,205   "truncated": false,206   "block": 10,207   "row": 17327208  },209  {210   "path": "pimms/chainTSMMC.py",211   "sha256": "6b86e501ef1b41d57267ef199ee93b3a3ee029f8d152f3c203a9b8783d193105",212   "language": "Python",213   "lines": 410,214   "truncated": false,215   "block": 10,216   "row": 16650217  },218  {219   "path": "pimms/check_randomness.py",220   "sha256": "f49aaa6843028f6623f0f09bc0c6ab29f0b40d0728ea8cff184f5f4dd0453be3",221   "language": "Python",222   "lines": 35,223   "truncated": false,224   "block": 10,225   "row": 10779226  },227  {228   "path": "pimms/cluster_utils.py",229   "sha256": "75925861261e1a4b86adf74df54a09ee55927f7d375413324ec5c5deec9c5c46",230   "language": "Python",231   "lines": 517,232   "truncated": false,233   "block": 10,234   "row": 16679235  },236  {237   "path": "pimms/crankshaft_list_functions.py",238   "sha256": "2e6d260aca47949f26230df3707ee976d7e4ade6ee98d782d3c138aa640abafe",239   "language": "Python",240   "lines": 575,241   "truncated": false,242   "block": 10,243   "row": 16696244  },245  {246   "path": "pimms/cython_testing.py",247   "sha256": "1aa424c98d67e9319e97ff008a3a0dfd819608abe88eff9f3463a1186de9a0df",248   "language": "Python",249   "lines": 23,250   "truncated": false,251   "block": 10,252   "row": 10717253  },254  {255   "path": "pimms/data_structures.py",256   "sha256": "f6c85a52ba03b146777fefd3cdf7deeee129cc54a852752437b160636858ebc3",257   "language": "Python",258   "lines": 286,259   "truncated": false,260   "block": 10,261   "row": 15329262  },263  {264   "path": "pimms/dev_megacrank_rng_check.py",265   "sha256": "deae2659a5187c7bba26adeac22ccc86ce0ed289dc34070e6b003c2bcbbfc4eb",266   "language": "Python",267   "lines": 57,268   "truncated": false,269   "block": 10,270   "row": 11733271  },272  {273   "path": "pimms/dev_randint_check.py",274   "sha256": "bb9fe52cf7e8314ea2fab9eae64b5b57b94b5daa5364b5fb1475dc6722528cd5",275   "language": "Python",276   "lines": 17,277   "truncated": false,278   "block": 10,279   "row": 10397280  },281  {282   "path": "pimms/dev_randneg_check.py",283   "sha256": "065b2f6c7cb1e80518b6e645cd5ef2da5514ec9f897d32bac3942f762ac0a984",284   "language": "Python",285   "lines": 19,286   "truncated": false,287   "block": 10,288   "row": 10417289  },290  {291   "path": "pimms/energy.py",292   "sha256": "5ae56d912bbde91ef198c2881fb9ce6eab5da2dbda2fb40de91f4ffbc8086b6d",293   "language": "Python",294   "lines": 1177,295   "truncated": false,296   "block": 10,297   "row": 17509298  },299  {300   "path": "pimms/fast_kernels/benchmark.py",301   "sha256": "d830d5efec8b243ea53fac1e236125a4fc47cf40f747eb02fe8d588f80c05538",302   "language": "Python",303   "lines": 308,304   "truncated": false,305   "block": 10,306   "row": 15645307  },308  {309   "path": "pimms/fast_kernels/benchmark_parallel.py",310   "sha256": "e949a656443d8275c0caf228e0c9bdc451959fcc03b6a7017688271d97b344d4",311   "language": "Python",312   "lines": 463,313   "truncated": false,314   "block": 10,315   "row": 16553316  },317  {318   "path": "pimms/fast_kernels/end_to_end.py",319   "sha256": "5123ffc1279249cf8cf9cf2ea5ba1844ae95dcd1239dd7f809683ac368bb0921",320   "language": "Python",321   "lines": 150,322   "truncated": false,323   "block": 10,324   "row": 14054325  },326  {327   "path": "pimms/file_utilities.py",328   "sha256": "ae1d7e8abca4ee8b57746b656b4cf2a787572c6f8dcd27e236fa87435f4dd849",329   "language": "Python",330   "lines": 242,331   "truncated": false,332   "block": 10,333   "row": 15321334  },335  {336   "path": "pimms/initialized_systems.py",337   "sha256": "4730cb0b3d60f2beed222668b7d1d0eb53f9b44a7e89abc6591b01589443ddd7",338   "language": "Python",339   "lines": 274,340   "truncated": false,341   "block": 10,342   "row": 15651343  },344  {345   "path": "pimms/keyfile_parser.py",346   "sha256": "3bed1ff67d28b1bbba9d8af2386d86d433691a2b99dd7cb83373db237542a5e7",347   "language": "Python",348   "lines": 2000,349   "truncated": false,350   "block": 10,351   "row": 17751352  },353  {354   "path": "pimms/lattice.py",355   "sha256": "9e9b6efb1ff8b0a0b6954cc1d16f1b193e8983dcf7ae00400bb7d7da8fbdb020",356   "language": "Python",357   "lines": 845,358   "truncated": false,359   "block": 10,360   "row": 17225361  },362  {363   "path": "pimms/latticeExceptions.py",364   "sha256": "66088f5ad98efc1899e23799a6f48b4449bc3ea67db3eeed516824f003f05e1f",365   "language": "Python",366   "lines": 195,367   "truncated": false,368   "block": 10,369   "row": 14053370  },371  {372   "path": "pimms/lattice_analysis_utils.py",373   "sha256": "cab2308a3e3537d3dd255c0ae4fd2e3cd68c2b77bed3619d3ccd1e62c713162a",374   "language": "Python",375   "lines": 988,376   "truncated": false,377   "block": 10,378   "row": 17365379  },380  {381   "path": "pimms/lattice_utils.py",382   "sha256": "44c128bf20e36f9f492ac0a0d696cf24d18b369a76625acff517773e8abce328",383   "language": "Python",384   "lines": 2940,385   "truncated": false,386   "block": 10,387   "row": 17750388  },389  {390   "path": "pimms/lemonade/__init__.py",391   "sha256": "42ff27d42e35304c520bb6b05b3775c2679cafe7dbf2ed30f57e656e441c2580",392   "language": "Python",393   "lines": 41,394   "truncated": false,395   "block": 10,396   "row": 11530397  },398  {399   "path": "pimms/lemonade/_analysis.py",400   "sha256": "83da8bd582be05c9dd2c775887331adc9dd1d03b1fa74e232a3b427d4b2ba5d5",401   "language": "Python",402   "lines": 118,403   "truncated": false,404   "block": 10,405   "row": 13489406  },407  {408   "path": "pimms/lemonade/_load.py",409   "sha256": "bebb3e88d43da033b55af46cb521b524d422edbfc7f2694d49749a93804eb27a",410   "language": "Python",411   "lines": 172,412   "truncated": false,413   "block": 10,414   "row": 15047415  },416  {417   "path": "pimms/lemonade/_store.py",418   "sha256": "4ddc005e5506513bd602a55e77974aa9e8d729984ac1f11be5030f45fa97fdd2",419   "language": "Python",420   "lines": 190,421   "truncated": false,422   "block": 10,423   "row": 15060424  },425  {426   "path": "pimms/lemonade/_topology.py",427   "sha256": "f165e612346357a18d8d37ed2700a69356fd225fba413152ce07e870d41eaaf2",428   "language": "Python",429   "lines": 133,430   "truncated": false,431   "block": 10,432   "row": 14045433  },434  {435   "path": "pimms/lemonade/cluster.py",436   "sha256": "49bb5d6621bc8047d3c467b4a739e046ae32bdf084c63b26ac517e90fb3768ea",437   "language": "Python",438   "lines": 178,439   "truncated": false,440   "block": 10,441   "row": 14330442  },443  {444   "path": "pimms/lemonade/frame.py",445   "sha256": "822f4ece5b933a867a5ae56b16355964e701fca96affb568ffbb46c2a33d13dd",446   "language": "Python",447   "lines": 126,448   "truncated": false,449   "block": 10,450   "row": 13437451  },452  {453   "path": "pimms/lemonade/kernels/__init__.py",454   "sha256": "8995526e56d98954ba32e3110051928a8e1a0127c253ce93bc2d15f78344c4a2",455   "language": "Python",456   "lines": 8,457   "truncated": false,458   "block": 10,459   "row": 10058460  },461  {462   "path": "pimms/lemonade/phase_separation.py",463   "sha256": "87f556e0d624edcc28034442198859a3a0546148db9a3eec315fd98b5ac041fe",464   "language": "Python",465   "lines": 586,466   "truncated": false,467   "block": 10,468   "row": 16992469  },470  {471   "path": "pimms/lemonade/polymer.py",472   "sha256": "29f4448127114c35e85b49ddfdab1c21e5ecc7101e99e03b692ac09e109125c8",473   "language": "Python",474   "lines": 100,475   "truncated": false,476   "block": 10,477   "row": 12870478  },479  {480   "path": "pimms/lemonade/surface_tension.py",481   "sha256": "f77ee50e0c975fd6ca6ce8951c738ec6fc59d817e0357eaa4a181ba0708c149a",482   "language": "Python",483   "lines": 306,484   "truncated": false,485   "block": 10,486   "row": 16047487  },488  {489   "path": "pimms/lemonade/tests/conftest.py",490   "sha256": "6768c485c03e357c4f7de7b695ef6f852705ffb08371cf03b0a262e12b7adab7",491   "language": "Python",492   "lines": 123,493   "truncated": false,494   "block": 10,495   "row": 13383496  },497  {498   "path": "pimms/lemonade/tests/test_lemonade.py",499   "sha256": "f5134b362bff92bceabb13affaf589560e46868556ac0ecc84c22cabce911517",500   "language": "Python",501   "lines": 255,502   "truncated": false,503   "block": 10,504   "row": 15519505  },506  {507   "path": "pimms/lemonade/tests/test_phase_separation.py",508   "sha256": "28a1e587830342b5fec53c6a33390dec72da1ac2974d1e3d705ed4290a5628ba",509   "language": "Python",510   "lines": 349,511   "truncated": false,512   "block": 10,513   "row": 16078514  },515  {516   "path": "pimms/lemonade/tests/test_surface_tension.py",517   "sha256": "f9a4e9eb3ba43f252e27ac9bc13bd51382f603fc2b75f0d6fde809d71b91d54d",518   "language": "Python",519   "lines": 102,520   "truncated": false,521   "block": 10,522   "row": 13093523  },524  {525   "path": "pimms/lemonade/trajectory.py",526   "sha256": "adf6de18825132d20d5bb8659affe72c8a94b3872a63d658f04d5d3658bb00be",527   "language": "Python",528   "lines": 135,529   "truncated": false,530   "block": 10,531   "row": 13303532  },533  {534   "path": "pimms/longrange_utils.py",535   "sha256": "1c84421a73e62048fbe5bc561745733c9438c115daed7fb6e15ac71e7a2518e6",536   "language": "Python",537   "lines": 249,538   "truncated": false,539   "block": 10,540   "row": 15414541  },542  {543   "path": "pimms/moveEvent.py",544   "sha256": "43bb70804fb89dd9c3a8ed9ab4602e6c2f4049cb7b3b815ec002207c94936b90",545   "language": "Python",546   "lines": 213,547   "truncated": false,548   "block": 10,549   "row": 15246550  },551  {552   "path": "pimms/moves.py",553   "sha256": "28dcc20c9669ec899df8bdd6f8c211ee62a86db7a181e449ab09b241a07f8147",554   "language": "Python",555   "lines": 3272,556   "truncated": false,557   "block": 10,558   "row": 17797559  },560  {561   "path": "pimms/nonequilibrium_utils.py",562   "sha256": "3cfaae9bb71056b16e03de559240bb7025fb6f1e861dc59266201be9c7cc2fe9",563   "language": "Python",564   "lines": 108,565   "truncated": false,566   "block": 10,567   "row": 13399568  },569  {570   "path": "pimms/numpy_utils.py",571   "sha256": "239ee1759458b475cfe335935a588c7e73f2c89ab2238a033bf72e0eadc0a2c2",572   "language": "Python",573   "lines": 155,574   "truncated": false,575   "block": 10,576   "row": 13335577  },578  {579   "path": "pimms/parameterfile_parser.py",580   "sha256": "05ac4d9ad50054bcc49a282a2fc9fe89e1e3154ac8509df86128604b0f5aeeb1",581   "language": "Python",582   "lines": 544,583   "truncated": false,584   "block": 10,585   "row": 16826586  },587  {588   "path": "pimms/pdb_utils.py",589   "sha256": "c1d4450c49dcf55bcd8c0de2799dc7776b431e05e8088966bbd542b9be5f7125",590   "language": "Python",591   "lines": 822,592   "truncated": false,593   "block": 10,594   "row": 17120595  },596  {597   "path": "pimms/pimmslogger.py",598   "sha256": "1ba7f0c0bf68a22e34b07d128f03c403bca7c09ccfe6bc1b369f7c264251d285",599   "language": "Python",600   "lines": 131,601   "truncated": false,602   "block": 10,603   "row": 13187604  },605  {606   "path": "pimms/print_interaction_matrix.py",607   "sha256": "023b2e5e452a7794d4a4fc9de0c399e60f59500e65ce95b9a151fdebe6817e34",608   "language": "Python",609   "lines": 29,610   "truncated": false,611   "block": 10,612   "row": 10822613  },614  {615   "path": "pimms/restart.py",616   "sha256": "73b5200adfb68721d7317bd9e436063547a8e93ae34b09df9702c0b4c35321cc",617   "language": "Python",618   "lines": 689,619   "truncated": false,620   "block": 10,621   "row": 17139622  },623  {624   "path": "pimms/simulation.py",625   "sha256": "fb3e694f2799a89c13539f80656b99e5ae203270256baca4bc50656c6cbe5f2f",626   "language": "Python",627   "lines": 2892,628   "truncated": false,629   "block": 10,630   "row": 17787631  },632  {633   "path": "pimms/tests/__init__.py",634   "sha256": "b6522578b5ffef3245c10bb09ea3fd7c9d27417743d6e03e97cb97f30e0a50a3",635   "language": "Python",636   "lines": 3,637   "truncated": false,638   "block": 9,639   "row": 6366640  },641  {642   "path": "pimms/tests/benchmarks/__init__.py",643   "sha256": "c9f20b4760da6d5a7da94b6683c6d7b5cab245e72436c180d38074fb4b25a502",644   "language": "Python",645   "lines": 1,646   "truncated": false,647   "block": 10,648   "row": 9674649  },650  {651   "path": "pimms/tests/benchmarks/__main__.py",652   "sha256": "3d2438ae92f4746e9ffaa1f837b1fe803f6281091d1f31f8c95643716f257d9a",653   "language": "Python",654   "lines": 5,655   "truncated": false,656   "block": 10,657   "row": 9718658  },659  {660   "path": "pimms/tests/benchmarks/cli.py",661   "sha256": "c985686685c3152bd70d7d0e45663a2364db53c05690e62bb5920997f7498a8c",662   "language": "Python",663   "lines": 493,664   "truncated": false,665   "block": 10,666   "row": 16349667  },668  {669   "path": "pimms/tests/kernel_test_utils.py",670   "sha256": "1b15ae6255e839189b6464cc19812ac279fb35849d6cd95ea0d096832e20915f",671   "language": "Python",672   "lines": 420,673   "truncated": false,674   "block": 10,675   "row": 16509676  },677  {678   "path": "pimms/tests/non_equal_box/test_non_equal_box.py",679   "sha256": "6c34365102b638e0b40cb6c20b0f8347137e9662711f7a1c59d2eb3ed486b751",680   "language": "Python",681   "lines": 277,682   "truncated": false,683   "block": 10,684   "row": 15910685  },686  {687   "path": "pimms/tests/simulation_tests/clean_up_tests.sh",688   "sha256": "73fdad3e0a58f543f49cccf9cb733fa032d8b57c8ff495b32e1f09b1a46220d8",689   "language": "Shell",690   "lines": 11,691   "truncated": false,692   "block": 10,693   "row": 19064694  },695  {696   "path": "pimms/tests/simulation_tests/conftest.py",697   "sha256": "3a9a74ac19bccfe45e9db3b8951cef473f87c5fe4c672c40627a97d693019eca",698   "language": "Python",699   "lines": 350,700   "truncated": false,701   "block": 10,702   "row": 15737703  },704  {705   "path": "pimms/tests/simulation_tests/generate_expected_output.py",706   "sha256": "df7359f9ecf0ebedb287582f75214e2807df19bc7d19e8ec2f8dedc59310ea34",707   "language": "Python",708   "lines": 411,709   "truncated": false,710   "block": 10,711   "row": 15890712  },713  {714   "path": "pimms/tests/simulation_tests/run_up_test_sims.sh",715   "sha256": "768654695b76093ed41c34525093cc2102c534d3e0658bfe235996e853c17b9f",716   "language": "Shell",717   "lines": 16,718   "truncated": false,719   "block": 10,720   "row": 19214721  },722  {723   "path": "pimms/tests/simulation_tests/test_simulation_regression.py",724   "sha256": "80ccf7da2ca653f61aa4ff12fb771f79ef922bb15f455564e7ac064aa9e4a8b7",725   "language": "Python",726   "lines": 25,727   "truncated": false,728   "block": 10,729   "row": 11156730  },731  {732   "path": "pimms/tests/test_acceptance.py",733   "sha256": "dbae62aa0ae93c469d327b1eeb154b4242931f3189a8822bd480ad4f92a93c84",734   "language": "Python",735   "lines": 221,736   "truncated": false,737   "block": 10,738   "row": 14780739  },740  {741   "path": "pimms/tests/test_analysis_fast_paths.py",742   "sha256": "6c5952b85fc50aaff846984c7fc517c84ce288ae34802519e2e7739bc1f40238",743   "language": "Python",744   "lines": 282,745   "truncated": false,746   "block": 10,747   "row": 15793748  },749  {750   "path": "pimms/tests/test_analysis_general.py",751   "sha256": "b7fdf32593b67378778bbee7fabfb1bae940998b4b433a231b40928be7ca11ef",752   "language": "Python",753   "lines": 68,754   "truncated": false,755   "block": 10,756   "row": 12244757  },758  {759   "path": "pimms/tests/test_analysis_io.py",760   "sha256": "bd765e54ca10c1e2a23645995cc3d3ac754407eb21575eb59400075134169d4d",761   "language": "Python",762   "lines": 253,763   "truncated": false,764   "block": 10,765   "row": 15482766  },767  {768   "path": "pimms/tests/test_analysis_structures.py",769   "sha256": "5d737cad937751b512185c1029c489be7e086b8aff5539f29f6878bb2f773844",770   "language": "Python",771   "lines": 78,772   "truncated": false,773   "block": 10,774   "row": 12798775  },776  {777   "path": "pimms/tests/test_chain.py",778   "sha256": "9bc5e53adc14d2976f592832b02e5a021b8bb4313dd3ad621754d87732a6fc03",779   "language": "Python",780   "lines": 356,781   "truncated": false,782   "block": 10,783   "row": 16083784  },785  {786   "path": "pimms/tests/test_cli.py",787   "sha256": "98044e40925521c91cc789007744da934384aee96ff87b1b37b95b2dc2071a55",788   "language": "Python",789   "lines": 161,790   "truncated": false,791   "block": 10,792   "row": 14528793  },794  {795   "path": "pimms/tests/test_cluster_utils.py",796   "sha256": "f52a96d262cbe4cd5c543f0dfee919d2fe93581a52bf5d9478e790bd2ffd1497",797   "language": "Python",798   "lines": 208,799   "truncated": false,800   "block": 10,801   "row": 14953802  },803  {804   "path": "pimms/tests/test_custom_analysis.py",805   "sha256": "a723691c3c8e09398a5c8fa4c13d3fc557b88cddbdc7a2bef6069384148a55fe",806   "language": "Python",807   "lines": 263,808   "truncated": false,809   "block": 10,810   "row": 14997811  },812  {813   "path": "pimms/tests/test_data_structures.py",814   "sha256": "6fb7fb67da823fb120d9a63fc4d43f87066d449a211a9be773ad5714c46887fa",815   "language": "Python",816   "lines": 82,817   "truncated": false,818   "block": 10,819   "row": 12393820  },821  {822   "path": "pimms/tests/test_detailed_balance.py",823   "sha256": "e7b6300ebb759c0448002e40f7c5f095ef9813d148deb76caffac94f00b464cd",824   "language": "Python",825   "lines": 322,826   "truncated": false,827   "block": 10,828   "row": 16330829  },830  {831   "path": "pimms/tests/test_energy.py",832   "sha256": "7e09d35219bfbeea586fa78d2196a51e0cd36d93b982e524bcb0a797079b51b3",833   "language": "Python",834   "lines": 257,835   "truncated": false,836   "block": 10,837   "row": 15290838  },839  {840   "path": "pimms/tests/test_initialized_systems.py",841   "sha256": "1265038a6c922b957da05755bb07222e285e7d14a4b3ced7832cf16497f18fd2",842   "language": "Python",843   "lines": 70,844   "truncated": false,845   "block": 10,846   "row": 12548847  },848  {849   "path": "pimms/tests/test_kernel_correctness.py",850   "sha256": "350e7c8e5417fa2e86eaebc38971ed94ae4eefb89c4f727c721a5e5904ae90a9",851   "language": "Python",852   "lines": 495,853   "truncated": false,854   "block": 10,855   "row": 16975856  },857  {858   "path": "pimms/tests/test_keyfile_parser.py",859   "sha256": "4b808aedefcd5690608f01b2c7f3528c149a7aebde5dc20cfe4f6275dad57861",860   "language": "Python",861   "lines": 157,862   "truncated": false,863   "block": 10,864   "row": 13647865  },866  {867   "path": "pimms/tests/test_lattice.py",868   "sha256": "870a30458109536a0768632e918bd988f0553cc8cc47df91d938f0da5de20a17",869   "language": "Python",870   "lines": 143,871   "truncated": false,872   "block": 10,873   "row": 13589874  },875  {876   "path": "pimms/tests/test_lattice_analysis_utils.py",877   "sha256": "cade5fd01682195ce95d34be712c9981596864fcb698346fa1c93747d114f7b6",878   "language": "Python",879   "lines": 298,880   "truncated": false,881   "block": 10,882   "row": 15472883  },884  {885   "path": "pimms/tests/test_lattice_utils.py",886   "sha256": "0ef923ffeece928002cf27047a199a6e0bdbaa9a7e82e0d6861163a2adc81b28",887   "language": "Python",888   "lines": 548,889   "truncated": false,890   "block": 10,891   "row": 16720892  },893  {894   "path": "pimms/tests/test_move_and_box_gating.py",895   "sha256": "1c8d72787c37dba16ad44cf41c80a07bdcf60b76431ae4aeae531896b227f3a3",896   "language": "Python",897   "lines": 186,898   "truncated": false,899   "block": 10,900   "row": 15104901  },902  {903   "path": "pimms/tests/test_moves.py",904   "sha256": "d8f20b195b9d522f0ce18bf6f2dbeb43b555b3fd6a182e4d0ff0f2baf95686ec",905   "language": "Python",906   "lines": 223,907   "truncated": false,908   "block": 10,909   "row": 14812910  },911  {912   "path": "pimms/tests/test_numpy_utils.py",913   "sha256": "0296306111e4e921376e12dc8268ce661508f337c8e5fa83735f07293d75f7e1",914   "language": "Python",915   "lines": 64,916   "truncated": false,917   "block": 10,918   "row": 11783919  },920  {921   "path": "pimms/tests/test_package_hygiene.py",922   "sha256": "e7a7e7eaba5580c732457ee7ce2d07d9a1985fbea7519ba495e44ff525fc5d61",923   "language": "Python",924   "lines": 131,925   "truncated": false,926   "block": 10,927   "row": 13843928  },929  {930   "path": "pimms/tests/test_parallel_report.py",931   "sha256": "63918fc3fc082c92a66c399500a3bf1cc01dee36e3b1e878bbc07e053ea675c2",932   "language": "Python",933   "lines": 132,934   "truncated": false,935   "block": 10,936   "row": 14572937  },938  {939   "path": "pimms/tests/test_parameterfile_parser.py",940   "sha256": "d5061bfd6f43422ff34b6dcb34b247dad3feeb15f677f1ab66a5a015f12b7403",941   "language": "Python",942   "lines": 231,943   "truncated": false,944   "block": 10,945   "row": 14172946  },947  {948   "path": "pimms/tests/test_pbc.py",949   "sha256": "f040d02e4477baf23b36b0ce9a4e0ce49f9557c5274a2d6454eb87058c862d83",950   "language": "Python",951   "lines": 259,952   "truncated": false,953   "block": 10,954   "row": 15694955  },956  {957   "path": "pimms/tests/test_pdb_utils.py",958   "sha256": "7371de54be36bb6863b3a42bac42f79921c85c32c7a7f5511e7d947183a6122d",959   "language": "Python",960   "lines": 204,961   "truncated": false,962   "block": 10,963   "row": 14903964  },965  {966   "path": "pimms/tests/test_pimms.py",967   "sha256": "0c5fa239ae52a2f0eb991bcc46158d74a3e765f0c1cc6cdbc7fb6445d74ddcac",968   "language": "Python",969   "lines": 12,970   "truncated": false,971   "block": 10,972   "row": 9972973  },974  {975   "path": "pimms/tests/test_rereview_cli.py",976   "sha256": "d8645082c126bcf0e3b79c22a0c08eac89ab181cb38e8d95b7c1f139abbcc9f9",977   "language": "Python",978   "lines": 37,979   "truncated": false,980   "block": 10,981   "row": 10945982  },983  {984   "path": "pimms/tests/test_rereview_mc_core.py",985   "sha256": "c8eca4785d4738f8589af1d39e25457164cffc80139f0382156c4b6520a42c72",986   "language": "Python",987   "lines": 226,988   "truncated": false,989   "block": 10,990   "row": 14785991  },992  {993   "path": "pimms/tests/test_restart.py",994   "sha256": "ca74b7ab42ddc41c820dd79c3ce440921de30e016e9cb88bf1b1bd66dcbe07d4",995   "language": "Python",996   "lines": 191,997   "truncated": false,998   "block": 10,999   "row": 137641000  },1001  {1002   "path": "pimms/tests/test_review_fixes.py",1003   "sha256": "69694f16a0e4d06d537ce939f845989d4f94e76459c647fd7ae687dcdef3e2be",1004   "language": "Python",1005   "lines": 1469,1006   "truncated": false,1007   "block": 10,1008   "row": 176541009  },1010  {1011   "path": "pimms/tests/test_simulation.py",1012   "sha256": "2d06352d6293f05429bfe2abf4cf9523d210b14768a47a52822fe538da71505b",1013   "language": "Python",1014   "lines": 481,1015   "truncated": false,1016   "block": 10,1017   "row": 163901018  },1019  {1020   "path": "pimms/tests/test_trajectory_unwrap.py",1021   "sha256": "6e457a97f8478341734f705f2b978373f0a017f0d38faa00ac3f0a51b595f43a",1022   "language": "Python",1023   "lines": 127,1024   "truncated": false,1025   "block": 10,1026   "row": 139681027  },1028  {1029   "path": "setup.py",1030   "sha256": "0499efe60c01bbeca1284e5365461fad5fce5063bbba294e923f87677682e6cb",1031   "language": "Python",1032   "lines": 139,1033   "truncated": false,1034   "block": 10,1035   "row": 131461036  }1037 ]1038}