OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/trendscenter/gift-bids",4 "url": "https://github.com/trendscenter/gift-bids/tree/main/misc/spect/proj/march2024",5 "host": "github.com",6 "commit": "0dd81ed375f01917777ad0c3497d15c545d11779",7 "license": "CC-BY-4.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "b1629970da3b8327f6a1dc1564eb9e24552a9d75cf4cda47ba4b237f522ebfdb",14 "language": "License",15 "lines": 399,16 "truncated": false,17 "block": 3,18 "row": 815819 },20 {21 "path": "README.md",22 "sha256": "efdacc36b34db3c33ce453632f1f3bc90a01ef8af7dfffa666ac96d11fd44f28",23 "language": "Text",24 "lines": 52,25 "truncated": false,26 "block": 4,27 "row": 248928 },29 {30 "path": "demo/cfg/Input_multi_ses.m",31 "sha256": "62483eae3b2b58a1000f041fe30cd2c59e791981f213d1d544172283b1fed395",32 "language": "MATLAB",33 "lines": 110,34 "truncated": false,35 "block": 3,36 "row": 1453737 },38 {39 "path": "demo/cfg/Input_spatial_ica_bids.m",40 "sha256": "cacef17ec66a0c21a84c203928a04d00b828ed947bd65d44dde54045633f9789",41 "language": "MATLAB",42 "lines": 111,43 "truncated": false,44 "block": 3,45 "row": 1456546 },47 {48 "path": "demo/cfg/icatb/icatb_nii2csv.sh",49 "sha256": "f78cdd368051616c2f84f260dec8f82e253a68f8622537b38d5544c478c2ac46",50 "language": "Shell",51 "lines": 44,52 "truncated": false,53 "block": 4,54 "row": 178355 },56 {57 "path": "demo/cfg/icatb/icatb_sbm_merge_nii.sh",58 "sha256": "c9339c85dc8bcad7441948e27d174ef62839f33c32d4be6b48c410b92fd2e115",59 "language": "Shell",60 "lines": 17,61 "truncated": false,62 "block": 4,63 "row": 154364 },65 {66 "path": "demo/cfg/icatb/misc/bids_dummy/icatb_defaults.m",67 "sha256": "0d9415004ad50f33c4244992a09e3de0cea48fd4349e287d8ee4c3606a72e5f1",68 "language": "MATLAB",69 "lines": 821,70 "truncated": false,71 "block": 3,72 "row": 1701773 },74 {75 "path": "demo/cfg/input_blind_pet.m",76 "sha256": "96eac99e9c82a3369ee18e07e95c183e04cb468b95d59a4f24c2b650786a29b6",77 "language": "MATLAB",78 "lines": 101,79 "truncated": false,80 "block": 3,81 "row": 1297482 },83 {84 "path": "demo/cfg/input_neuromark_pet.m",85 "sha256": "a9036fc505cc4e4dfd9e4299ea3b91c6f7f8205de4d0f4181fe07deb2a1a2b8a",86 "language": "MATLAB",87 "lines": 92,88 "truncated": false,89 "block": 3,90 "row": 1253291 },92 {93 "path": "demo/cfg/input_neuromark_pet_flexible.m",94 "sha256": "12f6d09db2e6697c94f2bbb7fd54d742a71eb4dc50c870cff566be947825a218",95 "language": "MATLAB",96 "lines": 92,97 "truncated": false,98 "block": 3,99 "row": 12525100 },101 {102 "path": "demo/cfg/input_neuromark_pet_niiprep.m",103 "sha256": "5af040e8ef24542edd25ece16fe423c5026daaf07e440f2b30b1cec50aa0c39d",104 "language": "MATLAB",105 "lines": 213,106 "truncated": false,107 "block": 3,108 "row": 14798109 },110 {111 "path": "demo/demo_data_nmark022026pet.sh",112 "sha256": "32f62877ceaf9f6fff32eb14cf064f84d9886f1cd00c4371f04b19d067604cd9",113 "language": "Shell",114 "lines": 52,115 "truncated": false,116 "block": 4,117 "row": 2117118 },119 {120 "path": "demo/gift-bids-demo.sh",121 "sha256": "611ac77a37194c5c001d5a6f90e234c591c4dc8c90cdfd6942d721429edcc333",122 "language": "Shell",123 "lines": 107,124 "truncated": false,125 "block": 4,126 "row": 2145127 },128 {129 "path": "demo/hostfiles/docker/docker_blindica_pet_basic.sh",130 "sha256": "6dd83c6061001bef1bd363c8f845e8ae5bea3a577952e81ab025a8df84fc9c7b",131 "language": "Shell",132 "lines": 11,133 "truncated": false,134 "block": 4,135 "row": 1578136 },137 {138 "path": "demo/hostfiles/docker/docker_neuromark_pet_basic.sh",139 "sha256": "e5bbfc244a6d8b30726b852a7d4ebc9a6d0cde04cd33adb09372df41ae21c35a",140 "language": "Shell",141 "lines": 13,142 "truncated": false,143 "block": 4,144 "row": 1618145 },146 {147 "path": "demo/hostfiles/docker/docker_neuromark_pet_sep_sub_files.sh",148 "sha256": "6ef3a707c1b53910a5401a264952357a9b6c7ba25bc8cb607b88e4dea136e08d",149 "language": "Shell",150 "lines": 54,151 "truncated": false,152 "block": 4,153 "row": 1843154 },155 {156 "path": "demo/smooth10.sh",157 "sha256": "eade93dfebcee9074fa20fd6da867f5abdb75fc4c0d9daa41587eba0cc7969e3",158 "language": "Shell",159 "lines": 8,160 "truncated": false,161 "block": 4,162 "row": 1446163 },164 {165 "path": "gica_bids_app.m",166 "sha256": "6cc2a6cd46ead0f578a67c60a461b39d35a233e4d8c425e8175bafcdecf5e0f3",167 "language": "MATLAB",168 "lines": 217,169 "truncated": false,170 "block": 3,171 "row": 15775172 },173 {174 "path": "misc/pet/pipe/onp/example_fbb/02_PET_FBB_main.sh",175 "sha256": "1574977fc4548136efceb8e3bb60686b06a91b2b09c3dd7b0a4fb52896b17546",176 "language": "Shell",177 "lines": 42,178 "truncated": false,179 "block": 4,180 "row": 1731181 },182 {183 "path": "misc/pet/pipe/onp/example_fbb/05_PET_dcm2niix.sh",184 "sha256": "6e06c244943c5de74c636024be93813fca611daad68d48ede2f2f16c36786a02",185 "language": "Shell",186 "lines": 215,187 "truncated": false,188 "block": 4,189 "row": 2206190 },191 {192 "path": "misc/pet/pipe/onp/example_fbb/08_mkdir_bids.sh",193 "sha256": "8c7d638b4dd1d599578eb260af79101b940082715bf67dd5b218d3d8d185f0e3",194 "language": "Shell",195 "lines": 201,196 "truncated": false,197 "block": 4,198 "row": 2259199 },200 {201 "path": "misc/pet/pipe/onp/example_fbb/10_mv_nii.sh",202 "sha256": "c1570b48b0e00996916b88dd05989c3c5c1a335d0c46bc62d09b0f7c83ddc2f5",203 "language": "Shell",204 "lines": 375,205 "truncated": false,206 "block": 4,207 "row": 2273208 },209 {210 "path": "misc/pet/pipe/onp/example_fbb/15_rename_nii.sh",211 "sha256": "4c946defea7550e51b1597b03c6e9f5a8de3ad15e3dd5685e19e58fa2d48640b",212 "language": "Shell",213 "lines": 200,214 "truncated": false,215 "block": 4,216 "row": 2268217 },218 {219 "path": "misc/pet/pipe/onp/example_fbb/20_mv_json.sh",220 "sha256": "df3664c7cbd2576977c8ae021365e3affc5e4a3f6c328b359819cc8d30031769",221 "language": "Shell",222 "lines": 375,223 "truncated": false,224 "block": 4,225 "row": 2270226 },227 {228 "path": "misc/pet/pipe/onp/example_fbb/25_rename_json.sh",229 "sha256": "f0b753ca0840ea365f18388593e7d8698e3ebbf8f60ffd8876526cef36e9346b",230 "language": "Shell",231 "lines": 200,232 "truncated": false,233 "block": 4,234 "row": 2269235 },236 {237 "path": "misc/pet/pipe/onp/example_fbb/35_t1_dcm2niix.sh",238 "sha256": "29ecb2c0da0a432410e73814160cd050355f152ef62ec9bf8d3b29b981ed4a0b",239 "language": "Shell",240 "lines": 196,241 "truncated": false,242 "block": 4,243 "row": 2239244 },245 {246 "path": "misc/pet/pipe/onp/example_fbb/40_mv_nii_t1.sh",247 "sha256": "bd0645ca3cf8fd4394346e6584ec3a55df2e7cc993cd27167f6ce4baa0de6a3f",248 "language": "Shell",249 "lines": 195,250 "truncated": false,251 "block": 4,252 "row": 2271253 },254 {255 "path": "misc/pet/pipe/onp/example_fbb/45_mv_json_t1.sh",256 "sha256": "c9a5364eb28b15dee43203760d080e788af4a5c4ea23bd512211e6a6de072236",257 "language": "Shell",258 "lines": 195,259 "truncated": false,260 "block": 4,261 "row": 2272262 },263 {264 "path": "misc/pet/pipe/onp/example_fbb/70_slurm_PET_FBB_FS_Nov2023.sh",265 "sha256": "f80808b70ce5b5c34befaebd6395b017a660e56a61746e1fb84d4d40dd6b51b5",266 "language": "Shell",267 "lines": 49,268 "truncated": false,269 "block": 4,270 "row": 1820271 },272 {273 "path": "misc/pet/pipe/onp/example_fbb/80_slurm_PET_FBB_HMC_Nov2023.sh",274 "sha256": "b3940575557af71d2380b46f743908d528a4abfa59b3a53b83d560dc637432ae",275 "language": "Shell",276 "lines": 30,277 "truncated": false,278 "block": 4,279 "row": 1631280 },281 {282 "path": "misc/pet/pipe/onp/example_fbb/90_slurm_PETPrep_FBB_Nov2023.sh",283 "sha256": "bcec597708ede8ec67fc02c7c5dad38518aa77f959d1b7515e8a64fd79604646",284 "language": "Shell",285 "lines": 33,286 "truncated": false,287 "block": 4,288 "row": 1664289 },290 {291 "path": "misc/pet/pipe/onp/example_fbb/99_final_intensities.sh",292 "sha256": "f12ea38e932b761401234308d7727ec2a88c633bd94d99c48afde9c1797ad77b",293 "language": "Shell",294 "lines": 187,295 "truncated": false,296 "block": 4,297 "row": 2236298 },299 {300 "path": "misc/pet/pipe/onp/example_fbb/trnSuvr.sh",301 "sha256": "934a56c7bb20d51547bf8ad1fda7c3455a347d801fc9e68a49bdcb155a932246",302 "language": "Shell",303 "lines": 66,304 "truncated": false,305 "block": 4,306 "row": 2079307 },308 {309 "path": "misc/spect/proj/march2024/Amritha_Spect_FNC_Matrix.m",310 "sha256": "edfc152b06adbff0511a664268b0ac739d68a955a7517a937f79dfd711c2d064",311 "language": "MATLAB",312 "lines": 246,313 "truncated": false,314 "block": 3,315 "row": 16339316 },317 {318 "path": "misc/spect/proj/march2024/SPECT_Analysis_Clinical_Part2.R",319 "sha256": "3faf1810ac1beb19b038ad958a06cd2e07f5a2e07126a2782e02de3680f9de37",320 "language": "R",321 "lines": 211,322 "truncated": false,323 "block": 4,324 "row": 963325 },326 {327 "path": "run.sh",328 "sha256": "2c909a839eb852d0d36c2996d176c0a83beec08e6e94fa48f6a57484646aef3a",329 "language": "Shell",330 "lines": 2,331 "truncated": false,332 "block": 4,333 "row": 1293334 }335 ]336}