Datasetpublic
OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
rootmanifests74github.com__shaner-lab__cablam.json
github.com__shaner-lab__cablam.json282 linesDownload Raw Back to 74
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/shaner-lab/cablam",4 "url": "https://github.com/Shaner-Lab/CaBLAM",5 "host": "github.com",6 "commit": "698ce783243b76516debc320ed9dc5cd00da4d7e",7 "license": "CC0-1.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/notebooks/.virtual_documents/dotplots.ipynb",13   "sha256": "4e9a6f1bace5129a5467dc4199553ebfc0947939bcc00fc8fc59923a5b61d308",14   "language": "Jupyter",15   "lines": 160,16   "truncated": false,17   "block": 14,18   "row": 1552819  },20  {21   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/notebooks/background_subtraction_&_traces_viewer.ipynb",22   "sha256": "724230cdeb83f43a20b687036e18a2ad0899ff2ba7b66a362f1811ecd83a18ec",23   "language": "Jupyter",24   "lines": 91,25   "truncated": false,26   "block": 14,27   "row": 1506328  },29  {30   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/notebooks/dotplots.ipynb",31   "sha256": "10cb841973dce65375b3e201a88b5b4a9d31223d9995b4e80f68b389bafc11b6",32   "language": "Jupyter",33   "lines": 161,34   "truncated": false,35   "block": 14,36   "row": 1552937  },38  {39   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/notebooks/lum_timecourse_analysis.ipynb",40   "sha256": "863a7bc44b93ea1c66790bfa3332ffe0a041640e6530fa6a8c10b13dcc19e392",41   "language": "Jupyter",42   "lines": 210,43   "truncated": false,44   "block": 14,45   "row": 1565046  },47  {48   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/notebooks/lum_timecourses_figure.ipynb",49   "sha256": "8ef88e0810632d1253dc6675e13267175525c82e225d533cdae1ef17cb0476ff",50   "language": "Jupyter",51   "lines": 134,52   "truncated": false,53   "block": 14,54   "row": 1530655  },56  {57   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/src/background_subtraction_&_traces_viewer.py",58   "sha256": "bef3124e9b7f93d66253e5fadfa9607392679198d3cad021f829e28a14119a56",59   "language": "Python",60   "lines": 107,61   "truncated": false,62   "block": 15,63   "row": 1322264  },65  {66   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/src/dotplots.py",67   "sha256": "0639afe334cacdee5f4ad3606f4163ea81dbc62214a309eb6f1a0b4c978d12e4",68   "language": "Python",69   "lines": 170,70   "truncated": false,71   "block": 15,72   "row": 1848173  },74  {75   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/src/lum_timecourse_analysis.py",76   "sha256": "e0da9ba0834925c507d438e132162d2b2347a53eddb8afec001bffc0b7c927fe",77   "language": "Python",78   "lines": 207,79   "truncated": false,80   "block": 15,81   "row": 1946082  },83  {84   "path": "CFz&FFz_validation_in_N2a/n2a_biolum_imaging/src/lum_timecourses_figure.py",85   "sha256": "820aafa95ea77707453c60555b50048c8b164adedc9ef1db1b956f301afe90c9",86   "language": "Python",87   "lines": 143,88   "truncated": false,89   "block": 15,90   "row": 1646191  },92  {93   "path": "CFz&FFz_validation_in_N2a/substrate_dose_response/notebook/dose_response_curve.ipynb",94   "sha256": "bd58491c7ff4b9b7a267fe78c38a3a462f521761da4ef9bf9d9890b95f9cc5be",95   "language": "Jupyter",96   "lines": 124,97   "truncated": false,98   "block": 14,99   "row": 15269100  },101  {102   "path": "CFz&FFz_validation_in_N2a/substrate_dose_response/src/dose_response_curve.py",103   "sha256": "68d5be8f01b6f68439044c16f2bd42e7eb28b68fa3f9bba1874b7dbf6b450d4c",104   "language": "Python",105   "lines": 133,106   "truncated": false,107   "block": 15,108   "row": 16014109  },110  {111   "path": "LICENSE",112   "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499",113   "language": "License",114   "lines": 121,115   "truncated": false,116   "block": 1,117   "row": 2210118  },119  {120   "path": "Neuron_Culture/BL_CalciumAnalysis/image_analysis_methods.py",121   "sha256": "250b20f372cb7f15d7517ed9452e5df0790d7235a32a1893a280dbe49e28ca8b",122   "language": "Python",123   "lines": 96,124   "truncated": false,125   "block": 15,126   "row": 15240127  },128  {129   "path": "Neuron_Culture/BL_CalciumAnalysis/image_analysis_methods_umich.py",130   "sha256": "f298bf16a8dfa895a5cbb7d6f4c2e183e0e790322240b4a56610a33b120933de",131   "language": "Python",132   "lines": 195,133   "truncated": false,134   "block": 15,135   "row": 21470136  },137  {138   "path": "Neuron_Culture/notebooks/calcium_imaging_analysis.ipynb",139   "sha256": "4af72d8bac47a3d51609bc25883358afd1fbeeed8d06b570e82a219a01034a61",140   "language": "Jupyter",141   "lines": 4379,142   "truncated": true,143   "block": 14,144   "row": 16747145  },146  {147   "path": "Neuron_Culture/notebooks/calcium_imaging_analysis_final.ipynb",148   "sha256": "33e13a6a58980d06a34ec86074228f12d97be74e2e23456463c0d1ff95cbb264",149   "language": "Jupyter",150   "lines": 3649,151   "truncated": false,152   "block": 14,153   "row": 16740154  },155  {156   "path": "README.md",157   "sha256": "e8298079335e9674cee9d160f19cb65266ccb08f2f8f7720e4b5032e16fbc2cd",158   "language": "Text",159   "lines": 157,160   "truncated": false,161   "block": 16,162   "row": 7436163  },164  {165   "path": "Titration/titration_fit_global.py",166   "sha256": "1301fc995ca3c3c2620da04946f70ea962fa38fbc9ddb8c2a045bd4ae135a65d",167   "language": "Python",168   "lines": 813,169   "truncated": false,170   "block": 16,171   "row": 503172  },173  {174   "path": "cablam_in_vivo_analysis/run_all_in_vivo.m",175   "sha256": "327a982435a76c62ef0b16709ca82693a3d6d4ceb80510bfde1da8952121d6de",176   "language": "MATLAB",177   "lines": 55,178   "truncated": false,179   "block": 14,180   "row": 22161181  },182  {183   "path": "cablam_in_vivo_analysis/scripts/infusion_ffz_data/inf_figures_and_stats.m",184   "sha256": "5a26ca1368aeba0fff56ae17311a10eee26505772a20f36c9815559c5c181a0b",185   "language": "MATLAB",186   "lines": 418,187   "truncated": false,188   "block": 15,189   "row": 3528190  },191  {192   "path": "cablam_in_vivo_analysis/scripts/infusion_ffz_data/inf_process_all.m",193   "sha256": "94282e7a2ed4003fc8bd1a81760841715b24e99fc96481b53aff84dbd24add31",194   "language": "MATLAB",195   "lines": 91,196   "truncated": false,197   "block": 14,198   "row": 23572199  },200  {201   "path": "cablam_in_vivo_analysis/scripts/infusion_ffz_data/inf_process_frames.m",202   "sha256": "c7cbf0e48b6d310c1b711436ad2e0379473d85c08005eca0f49e289ec89c8365",203   "language": "MATLAB",204   "lines": 51,205   "truncated": false,206   "block": 14,207   "row": 21058208  },209  {210   "path": "cablam_in_vivo_analysis/scripts/infusion_ffz_data/inf_process_main.m",211   "sha256": "1e207c7d7d4ca7300e2f3ab075b591a4273a430e69576a1aeffb0fb9319cdf36",212   "language": "MATLAB",213   "lines": 71,214   "truncated": false,215   "block": 14,216   "row": 22074217  },218  {219   "path": "cablam_in_vivo_analysis/scripts/infusion_ffz_data/inf_process_running.m",220   "sha256": "33aaf8c21be7d4026bb99f48b92c94e0f354545080bd623aa692f82b2cf47044",221   "language": "MATLAB",222   "lines": 64,223   "truncated": false,224   "block": 14,225   "row": 22838226  },227  {228   "path": "cablam_in_vivo_analysis/scripts/infusion_ffz_data/inf_process_trials.m",229   "sha256": "e6572db54f1b7802eddf3bac9cbe6282a8bf361b0da25a651ee926564988e923",230   "language": "MATLAB",231   "lines": 75,232   "truncated": false,233   "block": 14,234   "row": 22916235  },236  {237   "path": "cablam_in_vivo_analysis/scripts/long_ffz_data/long_duration_all.m",238   "sha256": "1b473d99629d73098cee3a75f4641358d6e456a5264e5176721b25e7981105a3",239   "language": "MATLAB",240   "lines": 201,241   "truncated": false,242   "block": 15,243   "row": 1131244  },245  {246   "path": "cablam_in_vivo_analysis/scripts/ro_cfz_data/ro_figures_and_stats.m",247   "sha256": "72eaadd6a904a7698a69c61859a8ae8e2deb41e6c3680c8e30930698bf680210",248   "language": "MATLAB",249   "lines": 125,250   "truncated": false,251   "block": 14,252   "row": 24571253  },254  {255   "path": "cablam_in_vivo_analysis/scripts/ro_cfz_data/ro_process_all.m",256   "sha256": "37a7cfd11091c9742cd2c1c6a6f6238ef2c277efcefdf6d60fab8849b88f263f",257   "language": "MATLAB",258   "lines": 96,259   "truncated": false,260   "block": 14,261   "row": 23587262  },263  {264   "path": "cablam_in_vivo_analysis/scripts/utilities/jbfill.m",265   "sha256": "2a52b0d5b912cb0ca22cffb4350bc196fc53e9bb3057ea14bf4e8316cab23dee",266   "language": "MATLAB",267   "lines": 31,268   "truncated": false,269   "block": 14,270   "row": 21591271  },272  {273   "path": "zebrafish data & code/makeBLfigs.m",274   "sha256": "e44532697e90b38f4b629f8b711ed16e5d8fb795563868f31de541801dd3e2ae",275   "language": "MATLAB",276   "lines": 223,277   "truncated": false,278   "block": 15,279   "row": 1833280  }281 ]282}