Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__medvisbonn__bonndit.json507 linesDownload Raw Back to 76
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/medvisbonn/bonndit",4 "url": "https://github.com/MedVisBonn/bonndit",5 "host": "github.com",6 "commit": "f0415475074486f68b459ce59b0db21b740e8d4c",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": ".virtual_documents/Bingham_filter.ipynb",13   "sha256": "03f940017d7903ab2f9a39651c9cd660b356a33126daf48f89da3ee282efb9cd",14   "language": "Jupyter",15   "lines": 299,16   "truncated": false,17   "block": 22,18   "row": 1310719  },20  {21   "path": "Bingham_filter.ipynb",22   "sha256": "39c42c0e773de2f9ab61ea00e1de2051c99f28808f4c4e1be14d4a9fc587687c",23   "language": "Jupyter",24   "lines": 300,25   "truncated": false,26   "block": 22,27   "row": 1311928  },29  {30   "path": "CMakeFiles/3.16.3/CompilerIdCXX/CMakeCXXCompilerId.cpp",31   "sha256": "f14bde86890747b7f5f01e4ced595dfc637340ec091c288334d9b47f67264eb8",32   "language": "C++",33   "lines": 660,34   "truncated": false,35   "block": 22,36   "row": 631437  },38  {39   "path": "CMakeFiles/FindOpenMP/OpenMPCheckVersion.cpp",40   "sha256": "417207a615f11e32488191cf373f7116592bbfa58b6058e0a26e1fe6d7e2b494",41   "language": "C++",42   "lines": 17,43   "truncated": false,44   "block": 22,45   "row": 410946  },47  {48   "path": "CMakeFiles/FindOpenMP/OpenMPTryFlag.cpp",49   "sha256": "81eafa9cf9c841bf41e43e87e40d71eacd72af5f563182b962bf5c91c9c5d890",50   "language": "C++",51   "lines": 12,52   "truncated": false,53   "block": 22,54   "row": 394155  },56  {57   "path": "LICENSE",58   "sha256": "10eb680da455665c7c09f14ba74a531e297eb9e52b943ce2d99c6615a476dd97",59   "language": "License",60   "lines": 33,61   "truncated": false,62   "block": 22,63   "row": 1415664  },65  {66   "path": "README.rst",67   "sha256": "f6cdeccd028893d2e8dfe8656add05cddddfe60ddefe0b1441f5e6b9c39cf795",68   "language": "Text",69   "lines": 101,70   "truncated": false,71   "block": 24,72   "row": 79773  },74  {75   "path": "docs/conf.py",76   "sha256": "49d342fbe56a04dbf44ab6e64bbf8f04c514288fffc0fb6a7c61a7aa1d437334",77   "language": "Python",78   "lines": 163,79   "truncated": false,80   "block": 23,81   "row": 628582  },83  {84   "path": "setup.py",85   "sha256": "741c81e2e46b8fbe00f301789a40b1ba89016c9895f1d3a56e90ddfadd32ebe1",86   "language": "Python",87   "lines": 325,88   "truncated": false,89   "block": 23,90   "row": 1143891  },92  {93   "path": "setup_conda.py",94   "sha256": "33d8be3452a96a1bdb2c939a876fe91ae88c4c0945de799190ef70f98b16fd74",95   "language": "Python",96   "lines": 205,97   "truncated": false,98   "block": 23,99   "row": 8265100  },101  {102   "path": "src/bonndit/__init__.py",103   "sha256": "1f3dfaddd0ce9aaf0321e252babb05e670d780744ba5cdaa411a145a008c5729",104   "language": "Python",105   "lines": 14,106   "truncated": false,107   "block": 22,108   "row": 27242109  },110  {111   "path": "src/bonndit/deconv/base.py",112   "sha256": "00216eba49b43f372bc3fda4ff365a37218463203d3d87b03327ac41d9bf901f",113   "language": "Python",114   "lines": 66,115   "truncated": false,116   "block": 23,117   "row": 941118  },119  {120   "path": "src/bonndit/deconv/dki.py",121   "sha256": "26a25dc2f1765e921b495e5d9a91ac7bcfd432b794c0cc636fb1130caa00265e",122   "language": "Python",123   "lines": 695,124   "truncated": false,125   "block": 23,126   "row": 13518127  },128  {129   "path": "src/bonndit/deconv/multivoxel.py",130   "sha256": "534364434698ade653dfd8ac6d1fec63d70f8ddfae51321e7704ce8a9ef429e8",131   "language": "Python",132   "lines": 219,133   "truncated": false,134   "block": 23,135   "row": 8497136  },137  {138   "path": "src/bonndit/deconv/shdeconv.py",139   "sha256": "ab640a2bbd921d6736a75cc711f828901cbc3913c2933d340897e763233ea3fc",140   "language": "Python",141   "lines": 620,142   "truncated": false,143   "block": 23,144   "row": 12793145  },146  {147   "path": "src/bonndit/deconv/shoredeconv.py",148   "sha256": "a366fdfa81f2f6532a23c5532d14db6ddaef4e2c3408e6f98520ec3d3435a991",149   "language": "Python",150   "lines": 885,151   "truncated": false,152   "block": 23,153   "row": 14276154  },155  {156   "path": "src/bonndit/directions/watsonfit.py",157   "sha256": "08cca64b9d62062aa8ae2d273973436472d35fc7af23b977c64ec5b041617526",158   "language": "Python",159   "lines": 389,160   "truncated": false,161   "block": 23,162   "row": 12798163  },164  {165   "path": "src/bonndit/models/LowRank.py",166   "sha256": "10e4f46a6f9b51f79bdafa993a8371d5c816ac26a2062385268becd21c88049c",167   "language": "Python",168   "lines": 18,169   "truncated": false,170   "block": 22,171   "row": 27593172  },173  {174   "path": "src/bonndit/tracking2/__init__.py",175   "sha256": "fa121a53dc48be3a7fb8ad7d073cb4c27fa856b2c018b8d91bc8659dbec73e79",176   "language": "Python",177   "lines": 6,178   "truncated": false,179   "block": 22,180   "row": 25898181  },182  {183   "path": "src/bonndit/tracking2/dirGetter.py",184   "sha256": "8da0fe938152f0b9c65024c71a5a5899442d2c8c30723933382028b1dc241e43",185   "language": "Python",186   "lines": 120,187   "truncated": false,188   "block": 23,189   "row": 6326190  },191  {192   "path": "src/bonndit/tracking2/dirSelector.py",193   "sha256": "799ca15fa1cbe33492c40b5ecab72cbdec1e21952db376c6c71e8e6e44b5ffbb",194   "language": "Python",195   "lines": 94,196   "truncated": false,197   "block": 23,198   "row": 4798199  },200  {201   "path": "src/bonndit/tracking2/dirSelectorRestored.py",202   "sha256": "5b4a58068ccf6e592245fa5869828330dda9cbdc717d50608e7bf2c57088796a",203   "language": "Python",204   "lines": 85,205   "truncated": false,206   "block": 23,207   "row": 4306208  },209  {210   "path": "src/bonndit/tracking2/dirValidator.py",211   "sha256": "6e840b5e0065659f5e715292a084c8f3ac8cd78857fcb2867a36e14fcc1d9cc7",212   "language": "Python",213   "lines": 126,214   "truncated": false,215   "block": 23,216   "row": 6042217  },218  {219   "path": "src/bonndit/tracking2/interpolator.py",220   "sha256": "8b0aa8bf868abd944bdb29addb81a4b5e91f9705000330b558824adb06567aea",221   "language": "Python",222   "lines": 69,223   "truncated": false,224   "block": 23,225   "row": 3457226  },227  {228   "path": "src/bonndit/tracking2/pointTrafo.py",229   "sha256": "01dadfd06fc5c28811ca3fbafc362bc52b5fac2d0105c86eba95ff3dd1add49b",230   "language": "Python",231   "lines": 11,232   "truncated": false,233   "block": 22,234   "row": 26357235  },236  {237   "path": "src/bonndit/tracking2/tracking.py",238   "sha256": "adda8629cfcae5343fc7d662ac96ccfc2f9d8ef8a12c58c2f133d3ca8a71aa69",239   "language": "Python",240   "lines": 89,241   "truncated": false,242   "block": 23,243   "row": 4276244  },245  {246   "path": "src/bonndit/utilc/watsonfit.cpp",247   "sha256": "109e2c02c9e1803ec5dd10b453ab9cbf0c6ddb2b7879ab7a98b0e3c87595894e",248   "language": "C++",249   "lines": 1624,250   "truncated": false,251   "block": 22,252   "row": 6431253  },254  {255   "path": "src/bonndit/utilc/watsonfit.h",256   "sha256": "ce8ee8efcc4e9b88d3c4266c8d89c8088e39f9b9235fe8e46bde6c33d6fa9cae",257   "language": "C/C++",258   "lines": 16,259   "truncated": false,260   "block": 22,261   "row": 6998262  },263  {264   "path": "src/bonndit/utils/constants.py",265   "sha256": "fbe99011877bd09e4887c09697a466110baea4a8dbd63c940610bda6446cae48",266   "language": "Python",267   "lines": 303,268   "truncated": false,269   "block": 23,270   "row": 12800271  },272  {273   "path": "src/bonndit/utils/dwmri.py",274   "sha256": "2f0a093ddc2539eae089404f27732945c3531ee5ae11ec621e300ab95986e029",275   "language": "Python",276   "lines": 337,277   "truncated": false,278   "block": 23,279   "row": 10994280  },281  {282   "path": "src/bonndit/utils/esh.py",283   "sha256": "6cff528d8098a345947706e0af02798627b9740f5bf3abda1b25d49c5dd7fdd8",284   "language": "Python",285   "lines": 445,286   "truncated": false,287   "block": 23,288   "row": 11978289  },290  {291   "path": "src/bonndit/utils/fields.py",292   "sha256": "2b54d33c973175afd76e51bff72adbc1869455438427a161a5808d868f4622c6",293   "language": "Python",294   "lines": 267,295   "truncated": false,296   "block": 23,297   "row": 9289298  },299  {300   "path": "src/bonndit/utils/gradients.py",301   "sha256": "484e2d7339b17bc1896ccb0768c35875e8f66173b93d43ce6a79acf3948eff84",302   "language": "Python",303   "lines": 50,304   "truncated": false,305   "block": 23,306   "row": 10307  },308  {309   "path": "src/bonndit/utils/io.py",310   "sha256": "888353a518c139882d8fc9bac2b30149d636c49469d5053831dc2755ad23c3cc",311   "language": "Python",312   "lines": 173,313   "truncated": false,314   "block": 23,315   "row": 6129316  },317  {318   "path": "src/bonndit/utils/mmath.py",319   "sha256": "40415dddb27eae98e06c1390f188bac220b2eb2b2176245c7ff8a45a040da18f",320   "language": "Python",321   "lines": 43,322   "truncated": false,323   "block": 22,324   "row": 28748325  },326  {327   "path": "src/bonndit/utils/multivoxel.py",328   "sha256": "534364434698ade653dfd8ac6d1fec63d70f8ddfae51321e7704ce8a9ef429e8",329   "language": "Python",330   "lines": 219,331   "truncated": false,332   "block": 23,333   "row": 8497334  },335  {336   "path": "src/bonndit/utils/nrrd.py",337   "sha256": "a40de70506960dc7836b622348e71cc5b93e9249f27651f0639c04bb427a5203",338   "language": "Python",339   "lines": 569,340   "truncated": false,341   "block": 23,342   "row": 13067343  },344  {345   "path": "src/bonndit/utils/shore.py",346   "sha256": "6dd6977aea0a84ba48ab2d005184621908b29faf5fcad6393da4a8456823c42a",347   "language": "Python",348   "lines": 252,349   "truncated": false,350   "block": 23,351   "row": 9209352  },353  {354   "path": "src/bonndit/utils/storage.py",355   "sha256": "876dbc37a432d94c04ac2fb9ba8cdf80ba779a101364664cc926707a9e7af0a5",356   "language": "Python",357   "lines": 275,358   "truncated": false,359   "block": 23,360   "row": 8386361  },362  {363   "path": "src/bonndit/utils/tck_io.py",364   "sha256": "7a96ddf6673601e9229c9d8135381c730bad6df8208e5937dd93ff0be78c46a0",365   "language": "Python",366   "lines": 114,367   "truncated": false,368   "block": 23,369   "row": 6339370  },371  {372   "path": "src/bonndit/utils/tensor.py",373   "sha256": "e2229ea6ece5279ecdcfe50768b1017c9598249ba5d7d32c48c2993d822f9b33",374   "language": "Python",375   "lines": 225,376   "truncated": false,377   "block": 23,378   "row": 6864379  },380  {381   "path": "src/bonndit/utils/vector.py",382   "sha256": "2cfed329e3b2410e93605c53fbf0f684a9c1715f35497e02a5c50fc3736afcac",383   "language": "Python",384   "lines": 132,385   "truncated": false,386   "block": 23,387   "row": 3655388  },389  {390   "path": "src/bonndit/utils/watson_fodf_generation.py",391   "sha256": "bb8070dc399351908d4fe7c3b5523da72ee3d5e7954f76e0e248b6b53f18bf8e",392   "language": "Python",393   "lines": 204,394   "truncated": false,395   "block": 23,396   "row": 8934397  },398  {399   "path": "src/bonndit/utils/watson_utils.py",400   "sha256": "762c3684cf5ca3ea0166100bf8c1ad16d037978367aac602e781b2e65afc66bd",401   "language": "Python",402   "lines": 302,403   "truncated": false,404   "block": 23,405   "row": 9778406  },407  {408   "path": "test.py",409   "sha256": "134feaf44a43a2c7c0c9a23a3204478333ac2e9950062ad58be5cec40505e673",410   "language": "Python",411   "lines": 9,412   "truncated": false,413   "block": 22,414   "row": 26120415  },416  {417   "path": "tests/constants.py",418   "sha256": "69636bdd1f3da375cdbf0e6f22bcd792d37b7cb8edb8622adb1182625d52b9d5",419   "language": "Python",420   "lines": 57,421   "truncated": false,422   "block": 23,423   "row": 3033424  },425  {426   "path": "tests/test_DkiFit.py",427   "sha256": "acf9b450a047dd656bf765f2841e00b4aaeb501e3d71482e590be7d18040f0cd",428   "language": "Python",429   "lines": 93,430   "truncated": false,431   "block": 23,432   "row": 3192433  },434  {435   "path": "tests/test_DkiModel.py",436   "sha256": "b8e125918b1f341c11115a16b136c700d62d84b74fa1cc680072ca34aa6ac4cc",437   "language": "Python",438   "lines": 44,439   "truncated": false,440   "block": 22,441   "row": 29574442  },443  {444   "path": "tests/test_ShResponse.py",445   "sha256": "5f1db734d097d4550957eda59d8c18674289e042417b5b850396b35b3adf719b",446   "language": "Python",447   "lines": 110,448   "truncated": false,449   "block": 23,450   "row": 5481451  },452  {453   "path": "tests/test_ShResponseEstimator.py",454   "sha256": "1155be9b5ddf62f9f58c4fd1be9670dfb069ba969f769f210f2a8d0d5b042303",455   "language": "Python",456   "lines": 61,457   "truncated": false,458   "block": 23,459   "row": 1464460  },461  {462   "path": "tests/test_ShoreFitMt.py",463   "sha256": "e4e1a440b86c085346688be2d025464f68fab09189dc10518104b7bdeddd7b6f",464   "language": "Python",465   "lines": 138,466   "truncated": false,467   "block": 23,468   "row": 7494469  },470  {471   "path": "tests/test_ShoreModelMt.py",472   "sha256": "888803c548d2c00a3e8765c82aa829a3fbc68312b2cb03818571e14c204d24fc",473   "language": "Python",474   "lines": 74,475   "truncated": false,476   "block": 23,477   "row": 3103478  },479  {480   "path": "tests/test_bonndit.py",481   "sha256": "18342ae17f3843412f353bd2ed59f8a1665fe0d0defc845f635ce56333d48ec1",482   "language": "Python",483   "lines": 6,484   "truncated": false,485   "block": 22,486   "row": 25639487  },488  {489   "path": "tests/test_gradients.py",490   "sha256": "ce6dad07aebeda40454b97802d39f0f4de27341c75f5ead161bb4c03956e2d59",491   "language": "Python",492   "lines": 46,493   "truncated": false,494   "block": 23,495   "row": 753496  },497  {498   "path": "tests/test_io.py",499   "sha256": "c6f77309cbfe82d24976fce5bab324af2e99cf1768c6f3c495fa56817354f91d",500   "language": "Python",501   "lines": 57,502   "truncated": false,503   "block": 23,504   "row": 772505  }506 ]507}