OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/pyushkevich/ashs",4 "url": "https://github.com/pyushkevich/ashs",5 "host": "github.com",6 "commit": "8dc72a2b7e96c19d64ef494890093b92ec2a10df",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "8ceb4b9ee5adedde47b31e975c1d90c73ad27b6b165a1dcd80c7c545eb65b903",14 "language": "License",15 "lines": 674,16 "truncated": false,17 "block": 1,18 "row": 223419 },20 {21 "path": "README.md",22 "sha256": "13e742d9b3dd2dfc427fd909d0beaff4678ecab1f7ed75d3693df710ee3d8900",23 "language": "Text",24 "lines": 4,25 "truncated": false,26 "block": 10,27 "row": 1971128 },29 {30 "path": "bin/ashs_atlas_bl_qsub.sh",31 "sha256": "8f5b1ff6883388279d1d6e4b5ec970dedc8d65edf5fe1e5fe596324210e928ef",32 "language": "Shell",33 "lines": 48,34 "truncated": false,35 "block": 10,36 "row": 1938937 },38 {39 "path": "bin/ashs_atlas_bootstrap_qsub.sh",40 "sha256": "1195944b4b5cfc1f4725f90dd70f80f663dde8e427fc6237d6c5e2934cf49615",41 "language": "Shell",42 "lines": 94,43 "truncated": false,44 "block": 10,45 "row": 1952646 },47 {48 "path": "bin/ashs_atlas_initdir_qsub.sh",49 "sha256": "ec9e7ce2f45dd953a7d371cb6aaf978d1f0052372c1927337d0b2047a88a8977",50 "language": "Shell",51 "lines": 75,52 "truncated": false,53 "block": 10,54 "row": 1949655 },56 {57 "path": "bin/ashs_atlas_lf_qsub.sh",58 "sha256": "02740b1776bd50ce000707eaf205be699d79e56ed905ca0074d7a6321def538d",59 "language": "Shell",60 "lines": 54,61 "truncated": false,62 "block": 10,63 "row": 1939564 },65 {66 "path": "bin/ashs_atlas_loo_qsub.sh",67 "sha256": "0d68b2daa1df60a9dbd91faf8bce4a2a9ef380b89f4087d78c13f9b5123e82f9",68 "language": "Shell",69 "lines": 94,70 "truncated": false,71 "block": 10,72 "row": 1951573 },74 {75 "path": "bin/ashs_atlas_pairwise_qsub.sh",76 "sha256": "dd991898fbb6e7258f95a52ef1a44e612144cfea6041400de650f55ba6dac52c",77 "language": "Shell",78 "lines": 62,79 "truncated": false,80 "block": 10,81 "row": 1942582 },83 {84 "path": "bin/ashs_atlas_resample_to_template_qsub.sh",85 "sha256": "3be9b8841d7a41b094643d931c4194cc23bd3f66d28547d9edb72a7e7587c516",86 "language": "Shell",87 "lines": 89,88 "truncated": false,89 "block": 10,90 "row": 1950591 },92 {93 "path": "bin/ashs_atlas_upgrade.sh",94 "sha256": "aa829e9c49dd4f466faf5380af9f02beaf540d139b69613ecf789044a3e9bd2e",95 "language": "Shell",96 "lines": 77,97 "truncated": false,98 "block": 10,99 "row": 19510100 },101 {102 "path": "bin/ashs_biascorr_qsub.sh",103 "sha256": "24e81bdd87d070afb9963d7729490fecd68cfc599207567c2012c32a06f02573",104 "language": "Shell",105 "lines": 74,106 "truncated": false,107 "block": 10,108 "row": 19471109 },110 {111 "path": "bin/ashs_bootstrap_qsub.sh",112 "sha256": "fc416a2d17169911ca1abc077d4e500aa1c235ec1447db2b8ad5cdeb15be174f",113 "language": "Shell",114 "lines": 142,115 "truncated": false,116 "block": 10,117 "row": 19575118 },119 {120 "path": "bin/ashs_common_master.sh",121 "sha256": "5af9da69ac4bd87aa2e8df7560eea8f6f578e9236763a6e0fce3924e24d946b0",122 "language": "Shell",123 "lines": 50,124 "truncated": false,125 "block": 10,126 "row": 19439127 },128 {129 "path": "bin/ashs_config.sh",130 "sha256": "76f98acceffe9afed136ce494acd6f5a9b84870208e71fc5cf05f0fa668f313f",131 "language": "Shell",132 "lines": 240,133 "truncated": false,134 "block": 10,135 "row": 19644136 },137 {138 "path": "bin/ashs_default_hook.sh",139 "sha256": "c1d45f3d4795647ef8f40a6d3da60abb7de91f97c6a28cbad9e6a7f15ae38c64",140 "language": "Shell",141 "lines": 60,142 "truncated": false,143 "block": 10,144 "row": 19455145 },146 {147 "path": "bin/ashs_extractstats_qsub.sh",148 "sha256": "016af6692857797db6150e81bacc27d9c1cef3a84af4b8ae0b75b51e08d31af4",149 "language": "Shell",150 "lines": 170,151 "truncated": false,152 "block": 10,153 "row": 19601154 },155 {156 "path": "bin/ashs_finalqa_qsub.sh",157 "sha256": "e351e7396476a2bdaa060746f193b268a61f68eef2d2987f474567d0f81abcdf",158 "language": "Shell",159 "lines": 112,160 "truncated": false,161 "block": 10,162 "row": 19547163 },164 {165 "path": "bin/ashs_function_qsub.sh",166 "sha256": "2d172b9b32c0a4821f32c85b46f366f51dfc9c4c644d9d402279995799dfa59b",167 "language": "Shell",168 "lines": 37,169 "truncated": false,170 "block": 10,171 "row": 19345172 },173 {174 "path": "bin/ashs_grid.sh",175 "sha256": "852dba2b304ec6f319387e4852b4a0cf9c121c103abac226759532b98a05e5d6",176 "language": "Shell",177 "lines": 242,178 "truncated": false,179 "block": 10,180 "row": 19624181 },182 {183 "path": "bin/ashs_heuristic_qsub.sh",184 "sha256": "b4ceb959ec174b876e4862b14c0095a3fc6cdd3552c870b1ade1ff8bae18e3fc",185 "language": "Shell",186 "lines": 92,187 "truncated": false,188 "block": 10,189 "row": 19500190 },191 {192 "path": "bin/ashs_lib.sh",193 "sha256": "6be602af2fa16dced17aeec5c06aff2c27b51dcbda27d4944104df2abb3e9518",194 "language": "Shell",195 "lines": 2563,196 "truncated": false,197 "block": 10,198 "row": 19670199 },200 {201 "path": "bin/ashs_main.sh",202 "sha256": "7d543cb703c692a5657d7c3c48ca303bffd0f5a778c91e7a7677a0cf4b5dc0f1",203 "language": "Shell",204 "lines": 593,205 "truncated": false,206 "block": 10,207 "row": 19666208 },209 {210 "path": "bin/ashs_multiaffine_qsub.sh",211 "sha256": "66c38e086dd632b2db2bfc864ea8e87f6307e5dd30c392304fb51c67edb96007",212 "language": "Shell",213 "lines": 64,214 "truncated": false,215 "block": 10,216 "row": 19448217 },218 {219 "path": "bin/ashs_multiatlas_qsub.sh",220 "sha256": "274cf3ebbf3dc4f48ca1e7b992418ad69f37dd9f4ced318b3f5ad8296cb863f1",221 "language": "Shell",222 "lines": 58,223 "truncated": false,224 "block": 10,225 "row": 19419226 },227 {228 "path": "bin/ashs_template_qsub.sh",229 "sha256": "f5df4e948225336a46da78282ce2404e6d468e8913d8d53b0b3ed3e0d8ebb9af",230 "language": "Shell",231 "lines": 286,232 "truncated": false,233 "block": 10,234 "row": 19640235 },236 {237 "path": "bin/ashs_thickness_qsub.sh",238 "sha256": "b5c5f486cf43ab7b5d34ff08839531d3c6d51a9726e364a52801be49c81bb547",239 "language": "Shell",240 "lines": 112,241 "truncated": false,242 "block": 10,243 "row": 19555244 },245 {246 "path": "bin/ashs_train.sh",247 "sha256": "094641744995bbd276870aeefacabb83ea9506dfbac50d3edc432c14d2ec03fb",248 "language": "Shell",249 "lines": 500,250 "truncated": false,251 "block": 10,252 "row": 19660253 },254 {255 "path": "bin/ashs_util_makepdf.sh",256 "sha256": "dfa799c200b695d70eb65c81a323cbb497c5224d616fd1c3ddc1afae3bb62d78",257 "language": "Shell",258 "lines": 127,259 "truncated": false,260 "block": 10,261 "row": 19534262 },263 {264 "path": "bin/ashs_version.sh",265 "sha256": "b40a0fe43b5293fe97bb56250cf2ed4308f57b77a0140c90cf5bffb4b474d702",266 "language": "Shell",267 "lines": 41,268 "truncated": false,269 "block": 10,270 "row": 19410271 },272 {273 "path": "bin/ashs_voting_qsub.sh",274 "sha256": "f041f9fd4760eaecddfa054220345e16d4d55aad6dc7c03596c439f2417c9d7e",275 "language": "Shell",276 "lines": 59,277 "truncated": false,278 "block": 10,279 "row": 19428280 },281 {282 "path": "ext/Linux/bin/ants_1042/ANTSpexec.sh",283 "sha256": "2cdbdaa6c544119ed8bbd0cd83eebf0ed7f232013a1a1be17e7ec1c17cfdb0d8",284 "language": "Shell",285 "lines": 215,286 "truncated": false,287 "block": 10,288 "row": 19569289 },290 {291 "path": "ext/Linux/bin/ants_1042/ants.sh",292 "sha256": "330ed7bf51497fde9dc05320e6d4220d32d5a953ef90a5cd1a6dd2ccbede1165",293 "language": "Shell",294 "lines": 160,295 "truncated": false,296 "block": 10,297 "row": 19600298 },299 {300 "path": "ext/Linux/bin/ants_1042/antsIntroduction.sh",301 "sha256": "2c86095d8c6a7f158b38f4b0cabcd0fe4165cbcecded2cae14029301f44632f8",302 "language": "Shell",303 "lines": 684,304 "truncated": false,305 "block": 10,306 "row": 19668307 },308 {309 "path": "ext/Linux/bin/ants_1042/antsaffine.sh",310 "sha256": "b23f8d10593fb10c42fc4e84f63b1b7a65dc32bd9c8a62ddec12be28dc81a7be",311 "language": "Shell",312 "lines": 86,313 "truncated": false,314 "block": 10,315 "row": 19456316 },317 {318 "path": "ext/Linux/bin/ants_1042/buildtemplateparallel.sh",319 "sha256": "05b2773628fae96ae29ddf3d324040d0fa1963568284eca917938ab5c7ff7d0f",320 "language": "Shell",321 "lines": 1061,322 "truncated": false,323 "block": 10,324 "row": 19669325 },326 {327 "path": "ext/Linux/bin/ants_1042/waitForSGEQJobs.pl",328 "sha256": "96c93828264b81fdb85443b5ea91379d4b8f9f5263e7852bc8991880db7926bc",329 "language": "Perl",330 "lines": 142,331 "truncated": false,332 "block": 10,333 "row": 9534334 },335 {336 "path": "src/CorrectiveLearning/AdaBoost.h",337 "sha256": "e106c00241c661838d73c6aaf785e63858a8fd8a446a9990d22d0b7383ac297e",338 "language": "C/C++",339 "lines": 304,340 "truncated": false,341 "block": 10,342 "row": 3393343 },344 {345 "path": "src/CorrectiveLearning/util.h",346 "sha256": "54cd0c7ad21ef27db6179402f647d4debb67cb7109ecdf79683e1cc38da04d58",347 "language": "C/C++",348 "lines": 111,349 "truncated": false,350 "block": 10,351 "row": 3025352 },353 {354 "path": "src/LabelFusion/WeightedVotingLabelFusionImageFilter.h",355 "sha256": "e26c1b3bfe291403e8f1c85c41ed30e184abd9eee22317135d4bd183cdb5a8f7",356 "language": "C/C++",357 "lines": 255,358 "truncated": false,359 "block": 10,360 "row": 3349361 },362 {363 "path": "src/PatchSuperResolution/include/CommandLineHelper.h",364 "sha256": "1fe1b7fcd4b4935c5bb96265de7f47721b60de0b099aa0806c6486084a52de69",365 "language": "C/C++",366 "lines": 328,367 "truncated": false,368 "block": 10,369 "row": 3371370 },371 {372 "path": "src/PatchSuperResolution/include/check.h",373 "sha256": "2895015ebed27f6f19aa669796fa0bf5f7354a0478aaadb71a91b321c1378bf5",374 "language": "C/C++",375 "lines": 11,376 "truncated": false,377 "block": 10,378 "row": 2211379 },380 {381 "path": "src/PatchSuperResolution/src/MABONLM3D.h",382 "sha256": "60f08e720e7de135bf0065049bbb20e2c6c6b53a858ee4de375c3ce9f5f44488",383 "language": "C/C++",384 "lines": 6,385 "truncated": false,386 "block": 10,387 "row": 2195388 },389 {390 "path": "src/PatchSuperResolution/src/NLMUpsample.h",391 "sha256": "c2e621585414533d97b8df1b124cb376b0d09c922a3e859bef64de79f5a1405a",392 "language": "C/C++",393 "lines": 4,394 "truncated": false,395 "block": 10,396 "row": 2196397 },398 {399 "path": "src/PatchSuperResolution/src/util/itkOrientedRASImage.h",400 "sha256": "ba2c627c49347a9418136d9eeff9b848cc805f1f6dbd5ecea05f2613c3ff9331",401 "language": "C/C++",402 "lines": 271,403 "truncated": false,404 "block": 10,405 "row": 3414406 },407 {408 "path": "src/PointSet/itkOrientedRASImage.h",409 "sha256": "1f6dfb1b5c67e7ec7bdb373b57ae287e168005f7bb57f1b0e59d4a6e936d46a3",410 "language": "C/C++",411 "lines": 216,412 "truncated": false,413 "block": 10,414 "row": 3322415 },416 {417 "path": "src/PointSet/itk_to_nifti_xform.h",418 "sha256": "33b6cbe9287cffa1b157865d1c60b525475779032242aaff14f651d125d4f3af",419 "language": "C/C++",420 "lines": 81,421 "truncated": false,422 "block": 10,423 "row": 2874424 },425 {426 "path": "testing/atlas_system_test/config/ashs_config_test.sh",427 "sha256": "f1a6cf091113edeb5e09c63cffa2370fe1d671a8675af6e29408c95b7d7b4639",428 "language": "Shell",429 "lines": 17,430 "truncated": false,431 "block": 10,432 "row": 19036433 },434 {435 "path": "testing/atlas_system_test/runme.sh",436 "sha256": "71e333d8bb58ca0e75afb1ad4e166143ce57bcf757413b9824f1e8d80b70ff3a",437 "language": "Shell",438 "lines": 15,439 "truncated": false,440 "block": 10,441 "row": 19041442 }443 ]444}