OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/kschan0214/sepia",4 "url": "https://github.com/kschan0214/sepia",5 "host": "github.com",6 "commit": "db939ccc1e9aa2d02c2dc0e6adb5ad2b1f0cc839",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "f69eda24dcbabca2c503d0f9ee703cb1d6d57690f2e5096c7a1160324941b0b5",14 "language": "License",15 "lines": 21,16 "truncated": false,17 "block": 11,18 "row": 1413319 },20 {21 "path": "README.md",22 "sha256": "3b43a1775b1094c9ecbb753a33e4a824a25e4c48f8d243cb9559319b3ec76f5c",23 "language": "Text",24 "lines": 252,25 "truncated": false,26 "block": 13,27 "row": 701528 },29 {30 "path": "SpecifyAtlasDirectory.template.m",31 "sha256": "063f98f89c90ae484320cd1ffd8612a316a2ef2bb570c386119f57d3a25a349b",32 "language": "MATLAB",33 "lines": 24,34 "truncated": false,35 "block": 11,36 "row": 1655337 },38 {39 "path": "SpecifyToolboxesDirectory.template.m",40 "sha256": "a756d1bc0ad5737adb8ad9a768deaeef4ee12ec4a2de8ff415abd36d45d6c7e4",41 "language": "MATLAB",42 "lines": 37,43 "truncated": false,44 "block": 11,45 "row": 1749946 },47 {48 "path": "addons/bfr/BFRnet/Wrapper_BFR_BFRnet.m",49 "sha256": "88dfe88a9e9cdca367c10277f2c76fff9944e99c19ae523f3922e86355740531",50 "language": "MATLAB",51 "lines": 85,52 "truncated": false,53 "block": 11,54 "row": 2051255 },56 {57 "path": "addons/bfr/BFRnet/addon_config.m",58 "sha256": "9ee1dca0ce9a10753e2089d7be24bd1b079de29b0657995475f8aa0608f22ff3",59 "language": "MATLAB",60 "lines": 30,61 "truncated": false,62 "block": 11,63 "row": 1692164 },65 {66 "path": "addons/bfr/BFRnet/get_set_bfr_BFRnet.m",67 "sha256": "1002ffee8989304649ac48de2de4a25a99fa1b4c7a7a0edc048b6fcda634d0ae",68 "language": "MATLAB",69 "lines": 29,70 "truncated": false,71 "block": 11,72 "row": 1619573 },74 {75 "path": "addons/bfr/BFRnet/sepia_handle_panel_bkgRemoval_BFRnet.m",76 "sha256": "10e8b5dedadcea4b98f31f8b3637d68091acbd8e92637b959e4db64abd83e629",77 "language": "MATLAB",78 "lines": 45,79 "truncated": false,80 "block": 11,81 "row": 1703582 },83 {84 "path": "addons/bfr/BFRnet/setup_BFRnet_environment.m",85 "sha256": "51c742b7b7cc081a5b578d847c87a6e826da11c3ed40027644b1386c7b1d9ebb",86 "language": "MATLAB",87 "lines": 8,88 "truncated": false,89 "block": 11,90 "row": 1533191 },92 {93 "path": "addons/echo_combine/medi_nonlinear_fit_bipolar/(nonsupport)addon_config.m",94 "sha256": "ac67959addd6afb374d3a8968d8fb6060e499617e9eee296a7505d39d84b4c7c",95 "language": "MATLAB",96 "lines": 30,97 "truncated": false,98 "block": 11,99 "row": 17172100 },101 {102 "path": "addons/echo_combine/medi_nonlinear_fit_bipolar/Wrapper_EchoCombine_MEDInonlinearfit_bipolar.m",103 "sha256": "a53000886f3262d9812d02e8ea50ac2b5bba9c0de9514d499eac8701d7338cea",104 "language": "MATLAB",105 "lines": 54,106 "truncated": false,107 "block": 11,108 "row": 18996109 },110 {111 "path": "addons/echo_combine/medi_nonlinear_fit_bipolar/get_set_echocombine_medinonlinearfitbipolar.m",112 "sha256": "71361606bd448c9d120c2e3dbebcdcf7cfe904147b1c1f9ca3df0b3cb51e873d",113 "language": "MATLAB",114 "lines": 95,115 "truncated": false,116 "block": 11,117 "row": 21651118 },119 {120 "path": "addons/echo_combine/medi_nonlinear_fit_bipolar/sepia_handle_panel_EchoCombine_medi_nonlinear_fit_bipolar.m",121 "sha256": "96fd921c7449fe2c8ca31565c03a917327403a497c380e7a91da51c195a29199",122 "language": "MATLAB",123 "lines": 137,124 "truncated": false,125 "block": 11,126 "row": 23394127 },128 {129 "path": "addons/echo_combine/romeo/Wrapper_TotalField_ROMEO.m",130 "sha256": "56417a663b5bb5c60b99a3191e1090ce7faf67500dc6e22d7b96c4acc03a2bfb",131 "language": "MATLAB",132 "lines": 122,133 "truncated": false,134 "block": 11,135 "row": 22884136 },137 {138 "path": "addons/echo_combine/romeo/addon_config.m",139 "sha256": "f4df03362bcab1d6a33d683eab3ca557cb4947d17509b03c4222971108239295",140 "language": "MATLAB",141 "lines": 30,142 "truncated": false,143 "block": 11,144 "row": 17008145 },146 {147 "path": "addons/echo_combine/romeo/get_set_TotalField_ROMEO.m",148 "sha256": "80d20078881a778c00fb1d33da7035804fe9690bab7709bd647d690ffb3809c0",149 "language": "MATLAB",150 "lines": 144,151 "truncated": false,152 "block": 11,153 "row": 23232154 },155 {156 "path": "addons/echo_combine/romeo/sepia_handle_panel_TotalField_ROMEO.m",157 "sha256": "35e685d382f4840e6a48ccec358e81260ea17168ffcaecf171d95a9cfa70421b",158 "language": "MATLAB",159 "lines": 158,160 "truncated": false,161 "block": 12,162 "row": 339163 },164 {165 "path": "addons/phase_unwrap/romeo/Wrapper_Unwrap_ROMEO_singleEcho.m",166 "sha256": "f4c079d4e2b7f3afc224bd70d5b28db1a25cc385c9a140bfd113a89d8c0c2ea0",167 "language": "MATLAB",168 "lines": 73,169 "truncated": false,170 "block": 11,171 "row": 20175172 },173 {174 "path": "addons/phase_unwrap/romeo/addon_config.m",175 "sha256": "7ad3f8565419ca1e9cdb64dfa02299e7afa1bcb2954417e366326944bea36e86",176 "language": "MATLAB",177 "lines": 36,178 "truncated": false,179 "block": 11,180 "row": 17517181 },182 {183 "path": "addons/phase_unwrap/segue/Wrapper_Unwrap_SEGUE.m",184 "sha256": "5630c914dd64f175e4baccf757229b86869d71faa0e9350608e77796d290f0d8",185 "language": "MATLAB",186 "lines": 48,187 "truncated": false,188 "block": 11,189 "row": 18034190 },191 {192 "path": "addons/phase_unwrap/segue/addon_config.m",193 "sha256": "91bac55e5bdbe8f68dac5bc7b7d21372875428c782b30945679707e3222a751d",194 "language": "MATLAB",195 "lines": 36,196 "truncated": false,197 "block": 11,198 "row": 17326199 },200 {201 "path": "addons/qsm/Chi-separation/Wrapper_QSM_Chi_separation.m",202 "sha256": "f5a7bb5f0bdf7c4e4468bd05679ba055c1847fed3b605159afc5805294181dbc",203 "language": "MATLAB",204 "lines": 167,205 "truncated": false,206 "block": 12,207 "row": 137208 },209 {210 "path": "addons/qsm/Chi-separation/addon_config.m",211 "sha256": "6f3a58736619c79a64e0837f881fa5909dc9d88c20bd4bd6df3636a27dd399f1",212 "language": "MATLAB",213 "lines": 30,214 "truncated": false,215 "block": 11,216 "row": 17121217 },218 {219 "path": "addons/qsm/Chi-separation/get_set_qsm_Chi_separation.m",220 "sha256": "fe59a787da960c598b7ffa55ba3cf27a890f2a1140d1889913bbf2a3d9e93d5c",221 "language": "MATLAB",222 "lines": 116,223 "truncated": false,224 "block": 11,225 "row": 23308226 },227 {228 "path": "addons/qsm/Chi-separation/sepia_handle_panel_qsm_Chi_separation.m",229 "sha256": "244afc72d9eb363fb3f7c4eeaa06a1d8f4b26f739a5122acf5d8621fe516b05f",230 "language": "MATLAB",231 "lines": 141,232 "truncated": false,233 "block": 11,234 "row": 22992235 },236 {237 "path": "addons/qsm/HEIDI/Wrapper_QSM_HEIDI4all.m",238 "sha256": "290185562f6f4b33907909ac845ea21961ecc65caabd1bb5b52e87998310f2ce",239 "language": "MATLAB",240 "lines": 188,241 "truncated": false,242 "block": 12,243 "row": 859244 },245 {246 "path": "addons/qsm/HEIDI/Wrapper_QSM_LSQRandHEIDI.m",247 "sha256": "b635a9f67c57c00a688d8daba28cbdcfae650fd348a7c20d90a24056b3ef396c",248 "language": "MATLAB",249 "lines": 206,250 "truncated": false,251 "block": 12,252 "row": 1181253 },254 {255 "path": "addons/qsm/HEIDI/addon_config.m",256 "sha256": "7c47d568f69c91c8d86cbeb1948fb1cdab28f0b257891f905b444aed8b2e43b6",257 "language": "MATLAB",258 "lines": 30,259 "truncated": false,260 "block": 11,261 "row": 16925262 },263 {264 "path": "addons/qsm/HEIDI/get_set_qsm_heidi.m",265 "sha256": "ed46116c91189b3afa017bdc6d74dbd4d9a6f5a54a377504ebaad4bbba39e523",266 "language": "MATLAB",267 "lines": 119,268 "truncated": false,269 "block": 11,270 "row": 22232271 },272 {273 "path": "addons/qsm/HEIDI/sepia_handle_panel_qsm_HEIDI.m",274 "sha256": "b2410860af2cdd0beee20db8d0aa8f864952e34114d68ad025a956430d9b6793",275 "language": "MATLAB",276 "lines": 161,277 "truncated": false,278 "block": 12,279 "row": 631280 },281 {282 "path": "addons/qsm/LPCNN/Wrapper_QSM_LPCNN.m",283 "sha256": "eaa31e2e07e6925a7ce16d603e0e33f19bd085856c5fed00d1c29cf4d57ce226",284 "language": "MATLAB",285 "lines": 154,286 "truncated": false,287 "block": 11,288 "row": 22791289 },290 {291 "path": "addons/qsm/LPCNN/addon_config.m",292 "sha256": "d50729df559bbf0497fb1c0633bcf16adcad4e237aab60487327e2c84e8f6d6b",293 "language": "MATLAB",294 "lines": 30,295 "truncated": false,296 "block": 11,297 "row": 16879298 },299 {300 "path": "addons/qsm/LPCNN/get_set_qsm_lpcnn.m",301 "sha256": "bc4b20d06bba531ddb62cd95150d0c203fdb6476bc17ccf123f112959650300a",302 "language": "MATLAB",303 "lines": 32,304 "truncated": false,305 "block": 11,306 "row": 16208307 },308 {309 "path": "addons/qsm/LPCNN/inference_template.py",310 "sha256": "03f81124b73f85a8193bc4c84ad9d2f8f7ebd1a27f35e17e3710581872a84b01",311 "language": "Python",312 "lines": 157,313 "truncated": false,314 "block": 12,315 "row": 14297316 },317 {318 "path": "addons/qsm/LPCNN/sepia_handle_panel_qsm_LPCNN.m",319 "sha256": "4181d4aa4997ca9b44dbf748e3f2920d3ddca5a82c895bad2754f88ec3c86fd6",320 "language": "MATLAB",321 "lines": 38,322 "truncated": false,323 "block": 11,324 "row": 16469325 },326 {327 "path": "addons/qsm/LPCNN/setup_LPCNN_environment.m",328 "sha256": "968f33df7d37544db77189f67a67ce4dac090145eec0a91d7f3e5242218a9d4d",329 "language": "MATLAB",330 "lines": 12,331 "truncated": false,332 "block": 11,333 "row": 16324334 },335 {336 "path": "addons/qsm/LPCNN/to_numpy_template.py",337 "sha256": "36dc1fd7a57ad3f199f03228a68f23641cdbfcb088c48d72c6bf67789d5d71d3",338 "language": "Python",339 "lines": 24,340 "truncated": false,341 "block": 12,342 "row": 4329343 },344 {345 "path": "addons/qsm/MRI_susceptibility_calculation/Wrapper_QSM_iterTik.m",346 "sha256": "a3120463be936e237547f2236ef60f1caa9e2c0fe18d106f2bf4bdb6a7ce3a83",347 "language": "MATLAB",348 "lines": 106,349 "truncated": false,350 "block": 11,351 "row": 22178352 },353 {354 "path": "addons/qsm/MRI_susceptibility_calculation/addon_config.m",355 "sha256": "dff63ff1dcb119d724746ebb1d2165daf40135f05f43d69072de16af65f4cd94",356 "language": "MATLAB",357 "lines": 30,358 "truncated": false,359 "block": 11,360 "row": 16974361 },362 {363 "path": "addons/qsm/MRI_susceptibility_calculation/get_set_qsm_iterTik.m",364 "sha256": "e0a2a518845afd55ee62aa238f3257b597eaf96f2081d039eaf4a02d5050f131",365 "language": "MATLAB",366 "lines": 82,367 "truncated": false,368 "block": 11,369 "row": 21108370 },371 {372 "path": "addons/qsm/MRI_susceptibility_calculation/sepia_handle_panel_qsm_iterTik.m",373 "sha256": "8b036f2860a16189d1161e1f047a04743d12776080d0194dbf3d1aaf9527f222",374 "language": "MATLAB",375 "lines": 129,376 "truncated": false,377 "block": 11,378 "row": 22895379 },380 {381 "path": "addons/qsm/QSMnet/Wrapper_QSM_QSMnet.m",382 "sha256": "89e58e34d86cd2b7af902462528ba231744370a6627c7d4d4011142c3280e325",383 "language": "MATLAB",384 "lines": 92,385 "truncated": false,386 "block": 11,387 "row": 21007388 },389 {390 "path": "addons/qsm/QSMnet/addon_config.m",391 "sha256": "0b9a23915bddd371f8bad877f93d5d9dd3213c3d41d3acd8a8483af47cc757c1",392 "language": "MATLAB",393 "lines": 30,394 "truncated": false,395 "block": 11,396 "row": 16898397 },398 {399 "path": "addons/qsm/QSMnet/get_set_qsm_QSMnet.m",400 "sha256": "3e7301cbcc281786b20f3b75677a88409b94761574eba6ba1083bdb4f3c10851",401 "language": "MATLAB",402 "lines": 31,403 "truncated": false,404 "block": 11,405 "row": 16185406 },407 {408 "path": "addons/qsm/QSMnet/inference_template.py",409 "sha256": "84125f1d5994ce9bcfaf76e3096fa63e3a6c7e46ab55a96b4adac5d46f3e5f39",410 "language": "Python",411 "lines": 106,412 "truncated": false,413 "block": 12,414 "row": 12433415 },416 {417 "path": "addons/qsm/QSMnet/sepia_handle_panel_qsm_QSMnet.m",418 "sha256": "78f9da118e84af4c9d345f07d72fef88727a5834a92719d0aa4798f6ac439d7b",419 "language": "MATLAB",420 "lines": 38,421 "truncated": false,422 "block": 11,423 "row": 16506424 },425 {426 "path": "addons/qsm/QSMnet/setup_qsmnet_environment.m",427 "sha256": "75a5a83c33b84d78769f5c4c86985c5ced4e7085c794f18c2a82a46bdfd44baf",428 "language": "MATLAB",429 "lines": 8,430 "truncated": false,431 "block": 11,432 "row": 15494433 },434 {435 "path": "addons/qsm/ndi/NDI.m",436 "sha256": "f146a48e7ffc4159e8bab2f7aa1eb8c5a603bb54946b58fc260df61db11b5705",437 "language": "MATLAB",438 "lines": 118,439 "truncated": false,440 "block": 11,441 "row": 21173442 },443 {444 "path": "addons/qsm/ndi/Wrapper_QSM_NDI.m",445 "sha256": "b6713e4bb3b3836b47233d7632bd922a1facacbeccb026e071e72bd443380480",446 "language": "MATLAB",447 "lines": 103,448 "truncated": false,449 "block": 11,450 "row": 21666451 },452 {453 "path": "addons/qsm/ndi/addon_config.m",454 "sha256": "4a7f8a6fd358ace1df7cefac8194e2914184c469e3aa4f6b323d352bae654c07",455 "language": "MATLAB",456 "lines": 30,457 "truncated": false,458 "block": 11,459 "row": 16855460 },461 {462 "path": "addons/qsm/ndi/get_set_qsm_ndi.m",463 "sha256": "cdc58484b02e36d074a725cc967a39f957b01d85fcca4821b0fe338accb7dd80",464 "language": "MATLAB",465 "lines": 61,466 "truncated": false,467 "block": 11,468 "row": 19114469 },470 {471 "path": "addons/qsm/ndi/rmse.m",472 "sha256": "5da68d4384d24d44599b33d9367d5a0e54ab52d8e1498eae69957fcae157131a",473 "language": "MATLAB",474 "lines": 14,475 "truncated": false,476 "block": 11,477 "row": 15011478 },479 {480 "path": "addons/qsm/ndi/sepia_handle_panel_qsm_NDI.m",481 "sha256": "d566b6c71b49a5e3e5745530968edc8fb9436c8c231a9a12858008c1ab6196cc",482 "language": "MATLAB",483 "lines": 90,484 "truncated": false,485 "block": 11,486 "row": 20922487 },488 {489 "path": "addons/qsm/xQSM/Wrapper_QSM_xQSM.m",490 "sha256": "5f51b4d99f91c1f9afb68a1494019564e8852da8242221d928708066389c40ab",491 "language": "MATLAB",492 "lines": 86,493 "truncated": false,494 "block": 11,495 "row": 20712496 },497 {498 "path": "addons/qsm/xQSM/addon_config.m",499 "sha256": "36ed6f6d085bc683f45a20efd7447574aaddea45a736cbf1050de98ec99ff72c",500 "language": "MATLAB",501 "lines": 30,502 "truncated": false,503 "block": 11,504 "row": 16865505 },506 {507 "path": "addons/qsm/xQSM/get_set_qsm_xQSM.m",508 "sha256": "01b7af742b13e3ba34865b61188fca52c6447d357d69c2e725f72eb593ff7e2c",509 "language": "MATLAB",510 "lines": 59,511 "truncated": false,512 "block": 11,513 "row": 18861514 },515 {516 "path": "addons/qsm/xQSM/sepia_handle_panel_qsm_xQSM.m",517 "sha256": "6f117dc0c26f1a1ee0b44f98c5af61c8ae03937a6c4ec142055d0507e8fa58d6",518 "language": "MATLAB",519 "lines": 61,520 "truncated": false,521 "block": 11,522 "row": 18536523 },524 {525 "path": "addons/qsm/xQSM/setup_xQSM_environment.m",526 "sha256": "bf1dbd00050afd31171fefee568db9e04e054c2562d7d65103e7c6ebd45078f8",527 "language": "MATLAB",528 "lines": 8,529 "truncated": false,530 "block": 11,531 "row": 15177532 },533 {534 "path": "addons/swi_smwi/clearswi/Wrapper_CLEARSWI.m",535 "sha256": "cd48f7909ed16b4ac8f8d034cae38e5cf264a6e4ceae1e8d183dfccd9277223c",536 "language": "MATLAB",537 "lines": 148,538 "truncated": false,539 "block": 11,540 "row": 23444541 },542 {543 "path": "addons/swi_smwi/clearswi/addon_config.m",544 "sha256": "3f3bcddcc5e6782ced473807e45a4f43caf7c3298cea830eddf2199d6155a279",545 "language": "MATLAB",546 "lines": 30,547 "truncated": false,548 "block": 11,549 "row": 16904550 },551 {552 "path": "addons/swi_smwi/clearswi/get_set_clearswi.m",553 "sha256": "a3adb8beeda27647257a557e3d3f1e8fb424fdb7fb96ccbde1cba9a8c0a7516b",554 "language": "MATLAB",555 "lines": 68,556 "truncated": false,557 "block": 11,558 "row": 20213559 },560 {561 "path": "addons/swi_smwi/clearswi/sepia_handle_panel_clearswi.m",562 "sha256": "672f7a97ce13275a613427a3fedfc88f2c7d8fe1d9a9ab87f6001bf19deda1ce",563 "language": "MATLAB",564 "lines": 123,565 "truncated": false,566 "block": 11,567 "row": 23042568 },569 {570 "path": "analysis/segmentation/ANTs_gre_2_Atlas_applyTransform.sh",571 "sha256": "8d33f81acc7a4a63b8d69beb14768f6c2248ac4fd3d030de729251fce6934c83",572 "language": "Shell",573 "lines": 42,574 "truncated": false,575 "block": 13,576 "row": 5004577 },578 {579 "path": "analysis/segmentation/ANTs_gre_2_t1w.sh",580 "sha256": "f2899c3eaef2e62af8ffd6ddfd677ba3fc8342665fe51c114502448c689f45c6",581 "language": "Shell",582 "lines": 86,583 "truncated": false,584 "block": 13,585 "row": 5479586 },587 {588 "path": "analysis/segmentation/ANTs_gre_2_t1wAtlas_applyTransform.sh",589 "sha256": "aaae6539f10404c7045fefa81b335f4b95c8774443c5d614afec7b160123530f",590 "language": "Shell",591 "lines": 56,592 "truncated": false,593 "block": 13,594 "row": 5195595 },596 {597 "path": "analysis/segmentation/ANTs_gre_2_t1w_applyTransform.sh",598 "sha256": "b024d8f8c775577812ddae77feff29c9e9508d7d2a358266b7eb66bff5bd7db4",599 "language": "Shell",600 "lines": 38,601 "truncated": false,602 "block": 13,603 "row": 4934604 },605 {606 "path": "analysis/segmentation/ANTs_t1w_2_Atlas_applyTransform.sh",607 "sha256": "f4cdb55275f481169e8afce18f1886f190eece88df13205f0a4e5f12a966b48c",608 "language": "Shell",609 "lines": 40,610 "truncated": false,611 "block": 13,612 "row": 4977613 },614 {615 "path": "analysis/segmentation/ANTs_t1w_2_t1w_atlas_quick.sh",616 "sha256": "1201eaec497c22699d628469aea3c0cb1fc494c294724a8aa1de4bae2124fb63",617 "language": "Shell",618 "lines": 71,619 "truncated": false,620 "block": 13,621 "row": 5452622 },623 {624 "path": "analysis/segmentation/ANTs_t1w_2_t1w_atlas_template.sh",625 "sha256": "4b502b543b763f7dedaf7ec5dc0e1e158ab2693ff4add6356e35a9ac2435e20d",626 "language": "Shell",627 "lines": 90,628 "truncated": false,629 "block": 13,630 "row": 5520631 },632 {633 "path": "analysis/segmentation/get_AHEAD_atlas_labels.m",634 "sha256": "17395c3e4aec6a8d823c0f10cf74611fc41c50b147ba4ca72f69c04f1e2e65fa",635 "language": "MATLAB",636 "lines": 351,637 "truncated": false,638 "block": 12,639 "row": 1969640 },641 {642 "path": "analysis/segmentation/get_CIT168_reinf_learn_labels.m",643 "sha256": "69c941eacf7166f25f3ea40232317b1a2dffeb2f1aec238058fafd1c92f8c22c",644 "language": "MATLAB",645 "lines": 197,646 "truncated": false,647 "block": 12,648 "row": 1077649 },650 {651 "path": "analysis/segmentation/get_MuSus100_atlas_labels.m",652 "sha256": "b03fb55f177ef5d5f0c7379e0e5b40339101f8102448c5bcb14ddb80b8adc2a7",653 "language": "MATLAB",654 "lines": 218,655 "truncated": false,656 "block": 12,657 "row": 1268658 },659 {660 "path": "analysis/segmentation/private/compute_AHEAD_hybrid_contrastmatch.m",661 "sha256": "e764305fc027b942bd3628002448aa0c73ef1025004c3b6de76b03b89b76e50b",662 "language": "MATLAB",663 "lines": 172,664 "truncated": false,665 "block": 12,666 "row": 122667 },668 {669 "path": "analysis/segmentation/private/compute_MuSus100_hybrid_contrastmatch.m",670 "sha256": "4338916ad0c3896f6f5a7a8e7d23b548f13b12d772dc3985de2afe2c6a2d827c",671 "language": "MATLAB",672 "lines": 169,673 "truncated": false,674 "block": 12,675 "row": 132676 },677 {678 "path": "analysis/segmentation/private/compute_MuSus100_hybrid_given_fit.m",679 "sha256": "84e7b636cfd04d090dc76408d57cde0602daf66652faa47bd0eaa224de3fc1e5",680 "language": "MATLAB",681 "lines": 45,682 "truncated": false,683 "block": 11,684 "row": 19151685 },686 {687 "path": "analysis/segmentation/sandbox/testing_script.m",688 "sha256": "2e1ab95abb705b3cae8ae8a35eac33283ef4ab8868ec790b81c0fecc3d5e4415",689 "language": "MATLAB",690 "lines": 79,691 "truncated": false,692 "block": 11,693 "row": 22861694 },695 {696 "path": "configuration/sepia_configuration_BFR.m",697 "sha256": "5a8237487f428eaeada92ea2487e7bfc9c7ca48c3861df48255e1128aa04c391",698 "language": "MATLAB",699 "lines": 66,700 "truncated": false,701 "block": 11,702 "row": 21044703 },704 {705 "path": "configuration/sepia_configuration_EchoCombine.m",706 "sha256": "5122605dc2c927677b513463cc234a3a2bb0f13cf5bb28adbfce292c1e52f76e",707 "language": "MATLAB",708 "lines": 43,709 "truncated": false,710 "block": 11,711 "row": 19347712 },713 {714 "path": "configuration/sepia_configuration_QSM.m",715 "sha256": "548acab04724d5b650f2e8c45130f4846110e60d3795f46f6cbbfab55f9d201f",716 "language": "MATLAB",717 "lines": 61,718 "truncated": false,719 "block": 11,720 "row": 20544721 },722 {723 "path": "configuration/sepia_configuration_R2s.m",724 "sha256": "b2b782831df79e5be39b44a80d5a88a7bb58c111115b8747bd52bce9629c8e88",725 "language": "MATLAB",726 "lines": 57,727 "truncated": false,728 "block": 11,729 "row": 20465730 },731 {732 "path": "configuration/sepia_configuration_SWISMWI.m",733 "sha256": "9b7bf393aaa24fb840f8358e10ef4661c3c51504dcd8a93c05b7c897c697b892",734 "language": "MATLAB",735 "lines": 42,736 "truncated": false,737 "block": 11,738 "row": 18891739 },740 {741 "path": "configuration/sepia_configuration_unwrap.m",742 "sha256": "f3030e0d2fc5efb50c7e061e6ac68bebf7d3e1ed39740745baa05b2b0b96505b",743 "language": "MATLAB",744 "lines": 49,745 "truncated": false,746 "block": 11,747 "row": 19269748 },749 {750 "path": "download_atlas.m",751 "sha256": "276e18e999ddd981e12a0f64d024181eecedee39b59d4db86954ec58b5ee7f21",752 "language": "MATLAB",753 "lines": 153,754 "truncated": false,755 "block": 11,756 "row": 23184757 },758 {759 "path": "download_toolboxes.m",760 "sha256": "266d85e86cdf0b9d91b86c59cc1d4654104d3ec18c4656addf7db5c653f7dfbc",761 "language": "MATLAB",762 "lines": 51,763 "truncated": false,764 "block": 11,765 "row": 18791766 },767 {768 "path": "gui_func/callback/ButtonOpen_Callback.m",769 "sha256": "7c6dd5aeae0806a98abd25fb487f232ec8fc6e2d08c944e0e43de3949992b5bd",770 "language": "MATLAB",771 "lines": 102,772 "truncated": false,773 "block": 11,774 "row": 21525775 },776 {777 "path": "gui_func/callback/CheckboxEditPair_Callback.m",778 "sha256": "1b87d85d71b307b1d86825e68c253dcfb15ce86c4ddd264a8b21901256ac2cec",779 "language": "MATLAB",780 "lines": 41,781 "truncated": false,782 "block": 11,783 "row": 17828784 },785 {786 "path": "gui_func/callback/EditInputMinMax_Callback.m",787 "sha256": "251a42fdb8ca049e3ceb266d9be65ca0f456c7be4cdf757790d0db86ca05909c",788 "language": "MATLAB",789 "lines": 46,790 "truncated": false,791 "block": 11,792 "row": 17913793 },794 {795 "path": "gui_func/callback/config/get_num_as_string.m",796 "sha256": "7ae4e68d5c74ba40da8d9bbf364cfcae805a52299e89abecbf6186266e8bd0e5",797 "language": "MATLAB",798 "lines": 57,799 "truncated": false,800 "block": 11,801 "row": 18392802 },803 {804 "path": "gui_func/callback/config/get_set_bfr_iharperella.m",805 "sha256": "ea9ee9fd83456cbc94f4c38e16ab6d7c167f406023a87b2bef9b65b69785bddc",806 "language": "MATLAB",807 "lines": 45,808 "truncated": false,809 "block": 11,810 "row": 16717811 },812 {813 "path": "gui_func/callback/config/get_set_bfr_lbv.m",814 "sha256": "e47342999a7aedbdb7186be9f5bdced28858d52429fd982ccad84b43194fc1cd",815 "language": "MATLAB",816 "lines": 48,817 "truncated": false,818 "block": 11,819 "row": 17959820 },821 {822 "path": "gui_func/callback/config/get_set_bfr_pdf.m",823 "sha256": "8914e4759d843d952b8b1af0fc9b523455772e20dc72d1ff2bda474abbae16a5",824 "language": "MATLAB",825 "lines": 48,826 "truncated": false,827 "block": 11,828 "row": 17987829 },830 {831 "path": "gui_func/callback/config/get_set_bfr_resharp.m",832 "sha256": "1fcff73a986950960930cbbfdfbe4e132fc3ba78a089bcad9c0f6b2dea5d5bbf",833 "language": "MATLAB",834 "lines": 46,835 "truncated": false,836 "block": 11,837 "row": 17793838 },839 {840 "path": "gui_func/callback/config/get_set_bfr_sharp.m",841 "sha256": "36e1adbfe5dfa11cfa84fc24f87a7315be973b088ee70d9c7eaff5685c4aa6a0",842 "language": "MATLAB",843 "lines": 47,844 "truncated": false,845 "block": 11,846 "row": 17800847 },848 {849 "path": "gui_func/callback/config/get_set_bfr_vsharp.m",850 "sha256": "9cf12c609353e9ba7c13fd374487f3406b3bc27bd1df8a1be7f8c79195821376",851 "language": "MATLAB",852 "lines": 76,853 "truncated": false,854 "block": 11,855 "row": 20428856 },857 {858 "path": "gui_func/callback/config/get_set_bfr_vsharpsti.m",859 "sha256": "1855a79e5319a68fad1919610b7a86cceae29fec767b93fed5adcc76a7e54978",860 "language": "MATLAB",861 "lines": 44,862 "truncated": false,863 "block": 11,864 "row": 17518865 },866 {867 "path": "gui_func/callback/config/get_set_bfr_vsharpsti2d.m",868 "sha256": "3d69e0029908818d20ce7d8b119def31ab2514b8b00c6e9148472bd109c7c9aa",869 "language": "MATLAB",870 "lines": 44,871 "truncated": false,872 "block": 11,873 "row": 17529874 },875 {876 "path": "gui_func/callback/config/get_set_echocombine_medinonlinearfit.m",877 "sha256": "e23302c21ee846aa9925683fca1d027320aa28315a4067c2e95e670cda1af5b9",878 "language": "MATLAB",879 "lines": 105,880 "truncated": false,881 "block": 11,882 "row": 22023883 },884 {885 "path": "gui_func/callback/config/get_set_echocombine_optimumweigts.m",886 "sha256": "62f592bc3e5d24a317e4ad5044e3c1352bbf4af70aa40bf23d63a33118f665c3",887 "language": "MATLAB",888 "lines": 109,889 "truncated": false,890 "block": 11,891 "row": 22198892 },893 {894 "path": "gui_func/callback/config/get_set_qsm_cfs.m",895 "sha256": "176f616e747b7e1829183fbbe0483790ce7740c5228edc7cd23eefffef35efc8",896 "language": "MATLAB",897 "lines": 52,898 "truncated": false,899 "block": 11,900 "row": 18610901 },902 {903 "path": "gui_func/callback/config/get_set_qsm_fansi.m",904 "sha256": "631fe532747da840c12ab378b271b0604bdd18f61de2cde52dd1411399ecfb36",905 "language": "MATLAB",906 "lines": 140,907 "truncated": false,908 "block": 11,909 "row": 22735910 },911 {912 "path": "gui_func/callback/config/get_set_qsm_ilsqr.m",913 "sha256": "4623cdcaaffd9fa6d386d0cad0c36ebd42048f6e7f45b4eb7a40d54d65f7f2d1",914 "language": "MATLAB",915 "lines": 60,916 "truncated": false,917 "block": 11,918 "row": 19205919 },920 {921 "path": "gui_func/callback/config/get_set_qsm_medi.m",922 "sha256": "5723df1154628316ae0c02d48da422daee28ca9a730405bb07c1dccf9690586b",923 "language": "MATLAB",924 "lines": 119,925 "truncated": false,926 "block": 11,927 "row": 22344928 },929 {930 "path": "gui_func/callback/config/get_set_qsm_starqsm.m",931 "sha256": "db76b974edb3ae7ba79288447c5106274d15369c3173728d05ad876d0a260851",932 "language": "MATLAB",933 "lines": 41,934 "truncated": false,935 "block": 11,936 "row": 17260937 },938 {939 "path": "gui_func/callback/config/get_set_qsm_stisuiteilsqr.m",940 "sha256": "ea262a94aece1330abdd2e27f3a0d1299b81103f19d2ca029e7727744e1e11bf",941 "language": "MATLAB",942 "lines": 59,943 "truncated": false,944 "block": 11,945 "row": 19049946 },947 {948 "path": "gui_func/callback/config/get_set_qsm_tkd.m",949 "sha256": "bf84e122924d7967eeb36279590ba3bde7d1c07a1b976e345dd7c30667795044",950 "language": "MATLAB",951 "lines": 44,952 "truncated": false,953 "block": 11,954 "row": 17558955 },956 {957 "path": "gui_func/callback/config/get_set_r2s_ARLO.m",958 "sha256": "2a37f1b05489c11c66644dbe80d0439e058f9bad512bf4e52d6499d1442fb24e",959 "language": "MATLAB",960 "lines": 53,961 "truncated": false,962 "block": 11,963 "row": 18226964 },965 {966 "path": "gui_func/callback/config/get_set_r2s_GeometricSum.m",967 "sha256": "0be64d7cf7b2ddb372922c8e492c42ba3eda94ec53e9200de585dc55b062c5a4",968 "language": "MATLAB",969 "lines": 53,970 "truncated": false,971 "block": 11,972 "row": 18235973 },974 {975 "path": "gui_func/callback/config/get_set_r2s_LinearRegression.m",976 "sha256": "cd1b8b920a5a328ff7e6792c66c9e2a424c862a7bda31b7baecace63ced8b35a",977 "language": "MATLAB",978 "lines": 36,979 "truncated": false,980 "block": 11,981 "row": 16446982 },983 {984 "path": "gui_func/callback/config/get_set_r2s_NLLS.m",985 "sha256": "0e1138c27c273caa8d0ea2bdc062de826c4ebbd5dee8a1a40119f3bafa4fc8f5",986 "language": "MATLAB",987 "lines": 45,988 "truncated": false,989 "block": 11,990 "row": 17579991 },992 {993 "path": "gui_func/callback/config/get_set_r2s_SequenceOfProduct.m",994 "sha256": "39deb68c7d26126a9581a21b72ff832050c31c60d03c7b62b58fa3cf134e82dc",995 "language": "MATLAB",996 "lines": 68,997 "truncated": false,998 "block": 11,999 "row": 193791000 },1001 {1002 "path": "gui_func/callback/config/get_set_r2s_Trapezoidal.m",1003 "sha256": "2735d217c707b3fb2d2f6a26a4cfaa4183c75670de456350fd9ed0980ea06e70",1004 "language": "MATLAB",1005 "lines": 53,1006 "truncated": false,1007 "block": 11,1008 "row": 182751009 },1010 {1011 "path": "gui_func/callback/config/get_string_as_string.m",1012 "sha256": "07b3b0532f77b4ffc864b0724614efae4321c7e9e622a0f1bf49101cc2d31e2b",1013 "language": "MATLAB",1014 "lines": 35,1015 "truncated": false,1016 "block": 11,1017 "row": 163391018 },1019 {1020 "path": "gui_func/callback/config/sepia_print_checkbox_value.m",1021 "sha256": "3a71540e2b0197998f451b6bc5066b20189bc60ecfb8a410d1439ab7711dc135",1022 "language": "MATLAB",1023 "lines": 27,1024 "truncated": false,1025 "block": 11,1026 "row": 159771027 },1028 {1029 "path": "gui_func/callback/config/sepia_print_edit_as_string.m",1030 "sha256": "ee64dd4adf371705eab62eaea49ea1c85e1dad151897741c9654fa92845f994e",1031 "language": "MATLAB",1032 "lines": 21,1033 "truncated": false,1034 "block": 11,1035 "row": 157531036 },1037 {1038 "path": "gui_func/callback/config/sepia_print_popup_as_string.m",1039 "sha256": "8da88cb883310b7ee0dd89f3d555d7c121e7ee6af20b4bee5075da2e387ec5c2",1040 "language": "MATLAB",1041 "lines": 27,1042 "truncated": false,1043 "block": 11,1044 "row": 160321045 },1046 {1047 "path": "gui_func/callback/config/sepia_read_checkbox_value.m",1048 "sha256": "d13553f329b5002de1b1200e5f336f47069e5cc1d1c1b3f17c210e7543ab7d3b",1049 "language": "MATLAB",1050 "lines": 29,1051 "truncated": false,1052 "block": 11,1053 "row": 163381054 },1055 {1056 "path": "gui_func/callback/config/sepia_read_edit_string.m",1057 "sha256": "043a80f37d65ac165a74cba8195785b3e9979162fdce89ed950a94b3cf4b8914",1058 "language": "MATLAB",1059 "lines": 29,1060 "truncated": false,1061 "block": 11,1062 "row": 162881063 },1064 {1065 "path": "gui_func/callback/config/sepia_read_popup_value.m",1066 "sha256": "eaa43af85d4709e9af2b8637f8a945e67340fea643533ead9847115699ab489d",1067 "language": "MATLAB",1068 "lines": 37,1069 "truncated": false,1070 "block": 11,1071 "row": 168161072 },1073 {1074 "path": "gui_func/callback/config/set_config_Callback.m",1075 "sha256": "8038446b6502afcfffad3e8554a2687e859765becd1adab95dbd1f80b7ba8110",1076 "language": "MATLAB",1077 "lines": 365,1078 "truncated": false,1079 "block": 12,1080 "row": 14031081 },1082 {1083 "path": "gui_func/callback/config/set_non_nan_value.m",1084 "sha256": "3ae8eb5919ebd08b73ed05c618293ba85212c7382842267b5c047e834b4b92cd",1085 "language": "MATLAB",1086 "lines": 21,1087 "truncated": false,1088 "block": 11,1089 "row": 153631090 },1091 {1092 "path": "gui_func/panel/Analysis_method/sepia_handle_panel_analysis_segmentation_AHEAD.m",1093 "sha256": "b7ba3d911dc12150b4750215d42ae54798f8fb4c0854b88eb7b0b5e2d1ce234b",1094 "language": "MATLAB",1095 "lines": 347,1096 "truncated": false,1097 "block": 12,1098 "row": 18841099 },1100 {1101 "path": "gui_func/panel/Analysis_method/sepia_handle_panel_analysis_segmentation_CIT168RL.m",1102 "sha256": "e4abbd148fe5f7544c3e278fefe129dca28ffcdd9fe9c305adc17cd242e3c9cb",1103 "language": "MATLAB",1104 "lines": 311,1105 "truncated": false,1106 "block": 12,1107 "row": 17671108 },1109 {1110 "path": "gui_func/panel/Analysis_method/sepia_handle_panel_analysis_segmentation_MuSus100.m",1111 "sha256": "e43c9b1818ee86616ab1693c8cee7a3c406f239e38a25af958b74118fa99a8c0",1112 "language": "MATLAB",1113 "lines": 318,1114 "truncated": false,1115 "block": 12,1116 "row": 18161117 },1118 {1119 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_LBV.m",1120 "sha256": "6f81d5b1604540cb61bb9bd141b629bec9607563a52e0b6069f9879fab044c1b",1121 "language": "MATLAB",1122 "lines": 80,1123 "truncated": false,1124 "block": 11,1125 "row": 206891126 },1127 {1128 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_PDF.m",1129 "sha256": "a1b38a2930d3d08c3e945d1c572af37dd8debe98305f8459f34adfd4d21a8c9b",1130 "language": "MATLAB",1131 "lines": 79,1132 "truncated": false,1133 "block": 11,1134 "row": 206581135 },1136 {1137 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_RESHARP.m",1138 "sha256": "12edc1442429a4fca9158d031ca3ed9a2ecc547a4372cb3307f5aa14a93f179f",1139 "language": "MATLAB",1140 "lines": 71,1141 "truncated": false,1142 "block": 11,1143 "row": 199151144 },1145 {1146 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_SHARP.m",1147 "sha256": "5c2dcb73932778e0642ec74bf5cbb6bda696909fa78840f8d76c095c70836ef5",1148 "language": "MATLAB",1149 "lines": 71,1150 "truncated": false,1151 "block": 11,1152 "row": 198301153 },1154 {1155 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_VSHARP.m",1156 "sha256": "dd775688d307d12eb0783e9e285fa193333a24b0f8810cbb786170e63e81d9f1",1157 "language": "MATLAB",1158 "lines": 105,1159 "truncated": false,1160 "block": 11,1161 "row": 219731162 },1163 {1164 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_VSHARPSTI.m",1165 "sha256": "f618af7a0389249ed3d6a9df9d9b70d9015d2d48177e1d5b8907081d2ff2dd75",1166 "language": "MATLAB",1167 "lines": 61,1168 "truncated": false,1169 "block": 11,1170 "row": 188481171 },1172 {1173 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_VSHARPSTI2D.m",1174 "sha256": "9dca3796deaa57dca64ca91d29ab034b74971d304498413927c76fc2b33d15bc",1175 "language": "MATLAB",1176 "lines": 61,1177 "truncated": false,1178 "block": 11,1179 "row": 189931180 },1181 {1182 "path": "gui_func/panel/BFR_method/sepia_handle_panel_bkgRemoval_iHARPERELLA.m",1183 "sha256": "a2a058cbb0c9f26ace78eec2f6e5f3dfac5f821c520c393d578364ba8f9c6a4f",1184 "language": "MATLAB",1185 "lines": 62,1186 "truncated": false,1187 "block": 11,1188 "row": 189231189 },1190 {1191 "path": "gui_func/panel/QSM_method/sepia_handle_panel_qsm_CFS.m",1192 "sha256": "d4dd813606e399f59b95d6c071047784ccad8ce82a8f2b87ee476826321b660e",1193 "language": "MATLAB",1194 "lines": 74,1195 "truncated": false,1196 "block": 11,1197 "row": 199701198 },1199 {1200 "path": "gui_func/panel/QSM_method/sepia_handle_panel_qsm_FANSI.m",