OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/cellgeni/starsolo",4 "url": "https://github.com/cellgeni/STARsolo/",5 "host": "github.com",6 "commit": "fbcd9ac360be3e5bdaad9b15bd4860537e6baff2",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",14 "language": "License",15 "lines": 674,16 "truncated": false,17 "block": 1,18 "row": 223519 },20 {21 "path": "README.md",22 "sha256": "b7c707f6f5f486e135ea467ce6cc51c69b32a1c7f842fae825a0be6aee91a187",23 "language": "Text",24 "lines": 363,25 "truncated": false,26 "block": 8,27 "row": 1078728 },29 {30 "path": "install.sh",31 "sha256": "94140e5a6ef3e80cc43614485e0842511a1d3656fcffeb73b53916cb9fd59975",32 "language": "Shell",33 "lines": 45,34 "truncated": false,35 "block": 8,36 "row": 804437 },38 {39 "path": "lib/common.sh",40 "sha256": "bfac0a96c2c0fc2891c1671761d6186fb9f4213558f253231c7534f9d7aaf194",41 "language": "Shell",42 "lines": 145,43 "truncated": false,44 "block": 8,45 "row": 910146 },47 {48 "path": "lib/platform_10x.sh",49 "sha256": "e6ee9779517ae52581c94577fdcaa7bf0d69a40295ba747bb329b0f1735f5457",50 "language": "Shell",51 "lines": 381,52 "truncated": false,53 "block": 8,54 "row": 937155 },56 {57 "path": "lib/platform_dropseq.sh",58 "sha256": "029c202da45bdcba16498dabff54335b98c64fc54e8e06ada0d42f699e4b6aaa",59 "language": "Shell",60 "lines": 63,61 "truncated": false,62 "block": 8,63 "row": 849064 },65 {66 "path": "lib/platform_indrops.sh",67 "sha256": "fcbd3ccb11fb9e1aa7d81cfe1e15d62d513f1c8b7ac097d5a8e074753a52820e",68 "language": "Shell",69 "lines": 80,70 "truncated": false,71 "block": 8,72 "row": 872773 },74 {75 "path": "lib/platform_rhapsody.sh",76 "sha256": "aba8fd9cb1f491c92e28ada482471709a2df51696f71eec3dd3173578be25f77",77 "language": "Shell",78 "lines": 80,79 "truncated": false,80 "block": 8,81 "row": 870182 },83 {84 "path": "lib/platform_smartseq.sh",85 "sha256": "0c8090dfb9355b5f673d3932d2b9d2012b2aa9c3cd54609c288eb37502531439",86 "language": "Shell",87 "lines": 78,88 "truncated": false,89 "block": 8,90 "row": 869991 },92 {93 "path": "lib/platform_strt.sh",94 "sha256": "44420db617b34b3515174ebdb27c36205f16116a85bc2771f4666c37a2ab61fb",95 "language": "Shell",96 "lines": 80,97 "truncated": false,98 "block": 8,99 "row": 8763100 },101 {102 "path": "lib/qc.sh",103 "sha256": "86f9b2e35babc99b6756a10344063fcf625b677c07beb52eb5c6648b19cec811",104 "language": "Shell",105 "lines": 242,106 "truncated": false,107 "block": 8,108 "row": 9314109 },110 {111 "path": "scripts/bbduk_trim.sh",112 "sha256": "25fb774aca318f1fa00e2c5525cbe14ff31fd623352481d5246b8f24c089122b",113 "language": "Shell",114 "lines": 24,115 "truncated": false,116 "block": 8,117 "row": 7455118 },119 {120 "path": "scripts/bsub_submit.sh",121 "sha256": "5d16773f8cecceaaf1889252ca779575cb1c484b176f8ffa75525bcb7b861186",122 "language": "Shell",123 "lines": 39,124 "truncated": false,125 "block": 8,126 "row": 7746127 },128 {129 "path": "scripts/generate_test_data.py",130 "sha256": "d20e38a0eb033d2f63c9edd19b9ec64d64866f14c7db31fa94bb339314c1c763",131 "language": "Python",132 "lines": 313,133 "truncated": false,134 "block": 7,135 "row": 3273136 },137 {138 "path": "scripts/legacy/bbduk.sh",139 "sha256": "64f55613c5ed60a514984c5e9b8ba9a6e66db8d69f8f1fa4c6205a3401a0ceb0",140 "language": "Shell",141 "lines": 6,142 "truncated": false,143 "block": 8,144 "row": 6682145 },146 {147 "path": "scripts/legacy/bsub16.sh",148 "sha256": "8a101d5145ed18a07823e2f9abb75e75dae0d3c5f0e52757c4ab022dc263e09f",149 "language": "Shell",150 "lines": 19,151 "truncated": false,152 "block": 8,153 "row": 7061154 },155 {156 "path": "scripts/legacy/solo_QC.sh",157 "sha256": "41f50a7a45450c7bdc9299d5f3cea64c7b156415e0893f853f46bc7cfbce535f",158 "language": "Shell",159 "lines": 182,160 "truncated": false,161 "block": 8,162 "row": 9214163 },164 {165 "path": "scripts/legacy/starsolo_10x_auto.sh",166 "sha256": "79a431bb52408a9d51e8b2dc3c372736c04ef1b6571e1aebd4334cf2b193b5d7",167 "language": "Shell",168 "lines": 437,169 "truncated": false,170 "block": 8,171 "row": 9376172 },173 {174 "path": "scripts/legacy/starsolo_bd_rhapsody.sh",175 "sha256": "2c931f7122c925791444bfbde0d5acf136f8e58a61de9151d4ddd55a137088d3",176 "language": "Shell",177 "lines": 91,178 "truncated": false,179 "block": 8,180 "row": 8972181 },182 {183 "path": "scripts/legacy/starsolo_dropseq.sh",184 "sha256": "260674256dfe6cb783996db8cf40828278fc57688d175d898d10ff0c9462b74f",185 "language": "Shell",186 "lines": 89,187 "truncated": false,188 "block": 8,189 "row": 8936190 },191 {192 "path": "scripts/legacy/starsolo_indrops.sh",193 "sha256": "9eca86018ef6928a78f6af199c4fb644487b013cd373576764a95d1bd2dd590a",194 "language": "Shell",195 "lines": 91,196 "truncated": false,197 "block": 8,198 "row": 8990199 },200 {201 "path": "scripts/legacy/starsolo_ss2.sh",202 "sha256": "40f957d83978f991fe0dbd0b2646eeddda058ded706833e0eeb8a76747a3156f",203 "language": "Shell",204 "lines": 66,205 "truncated": false,206 "block": 8,207 "row": 8651208 },209 {210 "path": "scripts/legacy/starsolo_strt.sh",211 "sha256": "7cb6a87be8c607690c9a99af09913ff5176e77f22a4b02a485fea07cc50611fa",212 "language": "Shell",213 "lines": 94,214 "truncated": false,215 "block": 8,216 "row": 8964217 }218 ]219}