OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/havakv/pycox",4 "url": "https://github.com/havakv/pycox",5 "host": "github.com",6 "commit": "3eccdd7fd9844a060f50fdcc315659f33a2d2dc1",7 "license": "BSD-2-Clause",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "dd443049cdacf83120b4a9df53770f124b08389d866ce9f6d9ea229770833c61",14   "language": "License",15   "lines": 25,16   "truncated": false,17   "block": 6,18   "row": 194319  },20  {21   "path": "README.md",22   "sha256": "040cffdca71c1fd2215daa6f216241d1c992598e195e29e67f5258d3d78cf8f9",23   "language": "Text",24   "lines": 410,25   "truncated": false,26   "block": 8,27   "row": 1085928  },29  {30   "path": "examples/01_introduction.ipynb",31   "sha256": "38d8df729de91e48e18cb7a8527810cf982840c94d73f9675c997dd8da7c83a3",32   "language": "Jupyter",33   "lines": 321,34   "truncated": false,35   "block": 6,36   "row": 21437  },38  {39   "path": "examples/02_introduction.ipynb",40   "sha256": "b2dde9292740f339353bc833344a236d091462e1f3c9a74d68aa89d5726943b3",41   "language": "Jupyter",42   "lines": 353,43   "truncated": false,44   "block": 6,45   "row": 20946  },47  {48   "path": "examples/03_network_architectures.ipynb",49   "sha256": "63dc22c2fde939844982491d234040f6c9e56d0d53732d23b9de1f77168ee9c8",50   "language": "Jupyter",51   "lines": 360,52   "truncated": false,53   "block": 6,54   "row": 24355  },56  {57   "path": "examples/04_mnist_dataloaders_cnn.ipynb",58   "sha256": "625f4174ff5d0fe01ab95c0347022abc17742a7a2f13c8e2a2747400de611789",59   "language": "Jupyter",60   "lines": 385,61   "truncated": false,62   "block": 6,63   "row": 24264  },65  {66   "path": "examples/administrative_brier_score.ipynb",67   "sha256": "3b22936e1db6b68b27282c7fb2832620a7efa54000ec0006248a5cc8f0e0c743",68   "language": "Jupyter",69   "lines": 270,70   "truncated": false,71   "block": 5,72   "row": 1766073  },74  {75   "path": "examples/cox-cc.ipynb",76   "sha256": "97dae3e5123e86c98a28fb06a6eb4d08066437e5582838eca2c437ced4d38393",77   "language": "Jupyter",78   "lines": 193,79   "truncated": false,80   "block": 5,81   "row": 1708882  },83  {84   "path": "examples/cox-ph.ipynb",85   "sha256": "5d820fee37834e14721b29e38add3d5048ba7712967f9fa485e5a484fdb6f739",86   "language": "Jupyter",87   "lines": 184,88   "truncated": false,89   "block": 5,90   "row": 1705491  },92  {93   "path": "examples/cox-time.ipynb",94   "sha256": "75efcf0e75ec0fbb8ddd2d1b90a169da9c19c2729290fdfe203c965e7202d8fe",95   "language": "Jupyter",96   "lines": 198,97   "truncated": false,98   "block": 5,99   "row": 17261100  },101  {102   "path": "examples/deephit.ipynb",103   "sha256": "69e1f75a4b2625c2004e7825ef5312777c85ac49e3c41d34e857c921e73e9acb",104   "language": "Jupyter",105   "lines": 258,106   "truncated": false,107   "block": 5,108   "row": 17687109  },110  {111   "path": "examples/deephit_competing_risks.ipynb",112   "sha256": "426b11f3253b68778fcbe75112e4cc38bac95d7bbd4c2d5c5e6a2568b6cc18b4",113   "language": "Jupyter",114   "lines": 241,115   "truncated": false,116   "block": 5,117   "row": 17482118  },119  {120   "path": "examples/mtlr.ipynb",121   "sha256": "5f6e4f786e9154e720946779d5eae40bc69387fd4bd015e4fdf6193300f90855",122   "language": "Jupyter",123   "lines": 254,124   "truncated": false,125   "block": 5,126   "row": 17623127  },128  {129   "path": "examples/pc-hazard.ipynb",130   "sha256": "4c37b037617b97bcf32c1b84cb6e38fc97a4d71a8672bc6027b035c74d7ca241",131   "language": "Jupyter",132   "lines": 255,133   "truncated": false,134   "block": 5,135   "row": 17594136  },137  {138   "path": "examples/pmf.ipynb",139   "sha256": "7bed165abde046bf5704f50b4b704838cfb004c151bbefe0127df31e138d954d",140   "language": "Jupyter",141   "lines": 250,142   "truncated": false,143   "block": 5,144   "row": 17600145  },146  {147   "path": "pycox/__init__.py",148   "sha256": "43241a3fa8177f6e258f06a41a5ca04202724317ed095dc7c6daa35f3bd1550e",149   "language": "Python",150   "lines": 14,151   "truncated": false,152   "block": 6,153   "row": 21694154  },155  {156   "path": "pycox/datasets/__init__.py",157   "sha256": "3507bf5d3d3df0bc064f5cbd5928c6890ba42a7f934df8d161373134ae72d671",158   "language": "Python",159   "lines": 16,160   "truncated": false,161   "block": 6,162   "row": 22967163  },164  {165   "path": "pycox/datasets/_dataset_loader.py",166   "sha256": "d566807854f5a969711ff4c7fc76a1c5fe6719d2cbf93b7f436a756474fe7d9d",167   "language": "Python",168   "lines": 68,169   "truncated": false,170   "block": 6,171   "row": 31816172  },173  {174   "path": "pycox/datasets/from_deepsurv.py",175   "sha256": "916e2f9cea3951d591ffebf6cbf9a6a189fc0ccb658856b000fb7121d3f3bf02",176   "language": "Python",177   "lines": 117,178   "truncated": false,179   "block": 6,180   "row": 38489181  },182  {183   "path": "pycox/datasets/from_kkbox.py",184   "sha256": "520bbf9dcd2a9a2fa47967954bb859c76b1548a9b7f9050f3c4cb598f99fb949",185   "language": "Python",186   "lines": 808,187   "truncated": false,188   "block": 7,189   "row": 11740190  },191  {192   "path": "pycox/datasets/from_rdatasets.py",193   "sha256": "fd46090d38606c09e1c647f2bde9570b21af9e280509c07a62627861fc6078c8",194   "language": "Python",195   "lines": 150,196   "truncated": false,197   "block": 6,198   "row": 42149199  },200  {201   "path": "pycox/datasets/from_simulations.py",202   "sha256": "8ca386cb66fe1b1761d336d3abed360501f1acbc5754cc1bd3b4b1f260fa1184",203   "language": "Python",204   "lines": 168,205   "truncated": false,206   "block": 6,207   "row": 42644208  },209  {210   "path": "pycox/evaluation/__init__.py",211   "sha256": "2660c93320fd5ca55d9f997138959f3a814522f60dc96f612cac58d3bdb6a5d1",212   "language": "Python",213   "lines": 7,214   "truncated": false,215   "block": 6,216   "row": 22377217  },218  {219   "path": "pycox/evaluation/admin.py",220   "sha256": "ef2645462d0d9b0322e7df03cd0ce9831e4577160ae20363e38ba4d7ae68f6f5",221   "language": "Python",222   "lines": 82,223   "truncated": false,224   "block": 6,225   "row": 36733226  },227  {228   "path": "pycox/evaluation/concordance.py",229   "sha256": "dc201bacde1bb6d00003429579ede03b1e1ba5a3999473de8c91402695694293",230   "language": "Python",231   "lines": 108,232   "truncated": false,233   "block": 6,234   "row": 39284235  },236  {237   "path": "pycox/evaluation/eval_surv.py",238   "sha256": "02884e57b0587f2273a3d0e1d5b42b03004fda789f128bc99390c46dec00e78a",239   "language": "Python",240   "lines": 355,241   "truncated": false,242   "block": 7,243   "row": 7309244  },245  {246   "path": "pycox/evaluation/ipcw.py",247   "sha256": "178a6178a4361f28392c1be1f2fa6461970ed0e1516182bf460c19a46c9e1930",248   "language": "Python",249   "lines": 91,250   "truncated": false,251   "block": 6,252   "row": 39649253  },254  {255   "path": "pycox/evaluation/metrics.py",256   "sha256": "1abe86eaf04b7a12221677af8d1ca8f8751af251f938a71a36b9072ed3697591",257   "language": "Python",258   "lines": 35,259   "truncated": false,260   "block": 6,261   "row": 26290262  },263  {264   "path": "pycox/models/__init__.py",265   "sha256": "5f16af86994f8dd7eae80bfbf09be18804ddaf45fc6ed52985b53e18a7d75bf3",266   "language": "Python",267   "lines": 11,268   "truncated": false,269   "block": 6,270   "row": 22424271  },272  {273   "path": "pycox/models/base.py",274   "sha256": "5e8cab1bc14c4c3e2f0db405defdf3c0ca9b19903a695ca3f9c68a589d3024bf",275   "language": "Python",276   "lines": 138,277   "truncated": false,278   "block": 6,279   "row": 43006280  },281  {282   "path": "pycox/models/bce_surv.py",283   "sha256": "353997e3c5e1f7062cf8fca671b2ad323a9700c1bc41978e305a7d437845ddd1",284   "language": "Python",285   "lines": 89,286   "truncated": false,287   "block": 6,288   "row": 39150289  },290  {291   "path": "pycox/models/cox.py",292   "sha256": "aad20834acb8def4f17fadc6c203df8a84679a79a814fd235996fe5404a14e97",293   "language": "Python",294   "lines": 358,295   "truncated": false,296   "block": 7,297   "row": 7641298  },299  {300   "path": "pycox/models/cox_cc.py",301   "sha256": "4692043647f72d6fe618fa7aed94543cb47c6567e6bbbb888bfc140256d4d3af",302   "language": "Python",303   "lines": 135,304   "truncated": false,305   "block": 6,306   "row": 43466307  },308  {309   "path": "pycox/models/cox_time.py",310   "sha256": "d33f8fa76e97af74f513c64fd3e9cb059cbf9debb16f7cd71febb3e4e5d048df",311   "language": "Python",312   "lines": 214,313   "truncated": false,314   "block": 7,315   "row": 3321316  },317  {318   "path": "pycox/models/data.py",319   "sha256": "9304481e71b54d36e91279cea556eb8c223328df1cbbb3d56f64e6d8e4e11159",320   "language": "Python",321   "lines": 137,322   "truncated": false,323   "block": 6,324   "row": 41268325  },326  {327   "path": "pycox/models/deephit.py",328   "sha256": "c56e8d04ab9d1c4151bfdda0d007530af80a55af15cbd96437af02b677eecb07",329   "language": "Python",330   "lines": 204,331   "truncated": false,332   "block": 7,333   "row": 2484334  },335  {336   "path": "pycox/models/interpolation.py",337   "sha256": "54de82533a30e39f52330ee76960c5b6fa8872c47e36192ffe0c1fe205e7b8f0",338   "language": "Python",339   "lines": 179,340   "truncated": false,341   "block": 7,342   "row": 1504343  },344  {345   "path": "pycox/models/logistic_hazard.py",346   "sha256": "ef15dd7719b938a90b8e56b5d9ba7419a6f0b3f3d60bb08dae70fbe25611ce9a",347   "language": "Python",348   "lines": 104,349   "truncated": false,350   "block": 6,351   "row": 41257352  },353  {354   "path": "pycox/models/loss.py",355   "sha256": "835c6a2c7109298bd8cab9e4c3b030a69758bfee3c7f414d7673a96ac09015e0",356   "language": "Python",357   "lines": 699,358   "truncated": false,359   "block": 7,360   "row": 10492361  },362  {363   "path": "pycox/models/mtlr.py",364   "sha256": "842962ff6178386eb79b1b166108a131fcf636e845cdf4bb169a9440a162ee67",365   "language": "Python",366   "lines": 52,367   "truncated": false,368   "block": 6,369   "row": 34778370  },371  {372   "path": "pycox/models/pc_hazard.py",373   "sha256": "b68f1ae430e76118eb3560ddd6321a5e984198573e10d8abccb79afaf5e42e8d",374   "language": "Python",375   "lines": 116,376   "truncated": false,377   "block": 6,378   "row": 42577379  },380  {381   "path": "pycox/models/pmf.py",382   "sha256": "7f0597fa0e620934cf944c1fb8db6ccbbe41f38ec3ac97397c9d6b0854464dec",383   "language": "Python",384   "lines": 100,385   "truncated": false,386   "block": 6,387   "row": 40093388  },389  {390   "path": "pycox/models/utils.py",391   "sha256": "1fa7e8c002f065071507ffb1b473ed57f81e10e4e75ac5896ac10cdaa5f302b9",392   "language": "Python",393   "lines": 61,394   "truncated": false,395   "block": 6,396   "row": 32569397  },398  {399   "path": "pycox/preprocessing/__init__.py",400   "sha256": "b8f33a8f98a42ead60979b1d9b74408173ded54097ba5d67213e0a0a5d6e385d",401   "language": "Python",402   "lines": 1,403   "truncated": false,404   "block": 6,405   "row": 20605406  },407  {408   "path": "pycox/preprocessing/discretization.py",409   "sha256": "bc2d59b2e172f5b833041d340b385d037d58a09bd20471432f0196f47f87db34",410   "language": "Python",411   "lines": 189,412   "truncated": false,413   "block": 6,414   "row": 44516415  },416  {417   "path": "pycox/preprocessing/feature_transforms.py",418   "sha256": "9a8e51fcae0bda73fec98520e4066ac91ce35286b8d89a81409adf16a0c3d318",419   "language": "Python",420   "lines": 38,421   "truncated": false,422   "block": 6,423   "row": 29551424  },425  {426   "path": "pycox/preprocessing/label_transforms.py",427   "sha256": "cd3583861d26aae040ad47fd0b7bf5754eb568a758a85535615769dda8493750",428   "language": "Python",429   "lines": 234,430   "truncated": false,431   "block": 7,432   "row": 2693433  },434  {435   "path": "pycox/simulations/__init__.py",436   "sha256": "b4424228d3b83f72923140395c215765414a801f4b9cf2b31cdca4735668772f",437   "language": "Python",438   "lines": 5,439   "truncated": false,440   "block": 6,441   "row": 21764442  },443  {444   "path": "pycox/simulations/base.py",445   "sha256": "9f15e610886c2585f48a25e2cd9bf37e7c4c11ebc26f7bd88b89f0d94d6e7020",446   "language": "Python",447   "lines": 51,448   "truncated": false,449   "block": 6,450   "row": 30553451  },452  {453   "path": "pycox/simulations/discrete_logit_hazard.py",454   "sha256": "39d3a777ffa87563d093af16057e56415000f05f3afc91528d899cbcf836877f",455   "language": "Python",456   "lines": 523,457   "truncated": false,458   "block": 7,459   "row": 8195460  },461  {462   "path": "pycox/simulations/relative_risk.py",463   "sha256": "e3de70f56539d974a284cf7e3fd887b55102a9323322946c211f6df5e4f8a286",464   "language": "Python",465   "lines": 168,466   "truncated": false,467   "block": 6,468   "row": 42107469  },470  {471   "path": "pycox/utils.py",472   "sha256": "59d4e85681294aa54210d2718ff3932404638e9115be4522d6b3ff94e38b573f",473   "language": "Python",474   "lines": 87,475   "truncated": false,476   "block": 6,477   "row": 35969478  },479  {480   "path": "setup.py",481   "sha256": "d8585bcd6aec81e2d87baaaf7ca41ae09688f58f6ff8882b3f6ae683023cf4b9",482   "language": "Python",483   "lines": 56,484   "truncated": false,485   "block": 6,486   "row": 29949487  },488  {489   "path": "tests/evaluation/test_admin.py",490   "sha256": "28e9c6d1bee856cdffb58056994743ca8c73611bef06d9c9d3a15892e629e0b8",491   "language": "Python",492   "lines": 83,493   "truncated": false,494   "block": 6,495   "row": 36681496  },497  {498   "path": "tests/models/test_bce_surv.py",499   "sha256": "49c648ab0a6187e191b917dab2d1abb4227ee375af3dc0e1edebdf455d18fe4a",500   "language": "Python",501   "lines": 25,502   "truncated": false,503   "block": 6,504   "row": 24613505  },506  {507   "path": "tests/models/test_cox.py",508   "sha256": "47a45aaf3271bc98d49cbc09c839d6af92bceeef30e276f97a5a563c35d75cbf",509   "language": "Python",510   "lines": 18,511   "truncated": false,512   "block": 6,513   "row": 23324514  },515  {516   "path": "tests/models/test_cox_cc.py",517   "sha256": "d46ff570a15a64823af9c2d094f79af20081b7e7430707b4870dd0d5ce0de06d",518   "language": "Python",519   "lines": 18,520   "truncated": false,521   "block": 6,522   "row": 23330523  },524  {525   "path": "tests/models/test_cox_time.py",526   "sha256": "1cc615581c509f94cd24a84d4c5273c3b681bca8fa045fc4b8d84e42bf22bfc1",527   "language": "Python",528   "lines": 21,529   "truncated": false,530   "block": 6,531   "row": 24026532  },533  {534   "path": "tests/models/test_deephit.py",535   "sha256": "2a71c91176092eeb3a92dae20b54af06135afed82c16c70ddef04ac65594aa3a",536   "language": "Python",537   "lines": 25,538   "truncated": false,539   "block": 6,540   "row": 24779541  },542  {543   "path": "tests/models/test_interpolation.py",544   "sha256": "f0996d878ff81069096643df586823ca839880016644effdadcd7c259dcba38c",545   "language": "Python",546   "lines": 102,547   "truncated": false,548   "block": 6,549   "row": 37345550  },551  {552   "path": "tests/models/test_logistic_hazard.py",553   "sha256": "75d4b96daaa3801903591ad2c80a3e9577eddea888ef73c08897d00f3bfb558e",554   "language": "Python",555   "lines": 25,556   "truncated": false,557   "block": 6,558   "row": 24800559  },560  {561   "path": "tests/models/test_loss.py",562   "sha256": "53bca51147cf1d5a3664f7b8c2b8df57939f1225025bf25ecba21e3ec26804e1",563   "language": "Python",564   "lines": 104,565   "truncated": false,566   "block": 6,567   "row": 38466568  },569  {570   "path": "tests/models/test_models_utils.py",571   "sha256": "c9075e5fb391d15e37dca89983e89bfba014aeb22e3909a9b6f5afbfd442c781",572   "language": "Python",573   "lines": 51,574   "truncated": false,575   "block": 6,576   "row": 30367577  },578  {579   "path": "tests/models/test_mtlr.py",580   "sha256": "6be79527bae9da6501f7564b909bcb81a8f85b3868769c16fccd4c493561dee7",581   "language": "Python",582   "lines": 25,583   "truncated": false,584   "block": 6,585   "row": 24566586  },587  {588   "path": "tests/models/test_pc_hazard.py",589   "sha256": "3a9912d60069ca3595150ce30b06e8320962d95a8ed0b6fef05de6ed7b7fead8",590   "language": "Python",591   "lines": 73,592   "truncated": false,593   "block": 6,594   "row": 33855595  },596  {597   "path": "tests/models/test_pmf.py",598   "sha256": "c5d0b04ec0b23b69083d577b95a99664dbbbe1af5cd522641b2a59e6fffd63b6",599   "language": "Python",600   "lines": 25,601   "truncated": false,602   "block": 6,603   "row": 24549604  },605  {606   "path": "tests/models/utils_model_testing.py",607   "sha256": "4edfd5e88ec67b0d9fc03029283a8c0b184d187d6e0cc67bbc0ab9fc7aabef41",608   "language": "Python",609   "lines": 43,610   "truncated": false,611   "block": 6,612   "row": 29021613  },614  {615   "path": "tests/test_utils.py",616   "sha256": "fe2e915280d66836c816de1a5661e90460e93fc930dcc6489ee25925e72c7275",617   "language": "Python",618   "lines": 23,619   "truncated": false,620   "block": 6,621   "row": 25056622  }623 ]624}