OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/stardist/stardist",4 "url": "https://github.com/stardist/stardist",5 "host": "github.com",6 "commit": "e80c6de700693bc228ed3c9ba1dc19c3785667ee",7 "license": "BSD-3-Clause",8 "license_confirmed_by": "license file LICENSE.txt",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE.txt",13 "sha256": "c279e190706f46dd920854b64d0d823a33be1981c187f581eb432b273f797492",14 "language": "License",15 "lines": 29,16 "truncated": false,17 "block": 2,18 "row": 114619 },20 {21 "path": "README.md",22 "sha256": "1ba1be7eabcce90ef75f7f85f88b31ccae4cae8bca96290e409bfd2bc61048e5",23 "language": "Text",24 "lines": 334,25 "truncated": false,26 "block": 2,27 "row": 265828 },29 {30 "path": "examples/2D/1_data.ipynb",31 "sha256": "667fd623e4ee903ae2ea197583f88b636e966c33c7f65413dd213e133ccd843a",32 "language": "Jupyter",33 "lines": 110,34 "truncated": false,35 "block": 2,36 "row": 102437 },38 {39 "path": "examples/2D/2_training.ipynb",40 "sha256": "0eec9d5313c6e0dc26ccbe77be7162bd335dce7c2997cbba8bd2eb696d77bb26",41 "language": "Jupyter",42 "lines": 293,43 "truncated": false,44 "block": 2,45 "row": 107646 },47 {48 "path": "examples/2D/3_prediction.ipynb",49 "sha256": "d4ca2d793e271039aa19177a02d7bf317f6f64caca98350d6ce86456f0c4267e",50 "language": "Jupyter",51 "lines": 158,52 "truncated": false,53 "block": 2,54 "row": 103555 },56 {57 "path": "examples/3D/1_data.ipynb",58 "sha256": "e2bcf5279558cd7f5894272ff96af1ebf815ae430cb461924ade40ecacdefb65",59 "language": "Jupyter",60 "lines": 137,61 "truncated": false,62 "block": 2,63 "row": 103164 },65 {66 "path": "examples/3D/2_training.ipynb",67 "sha256": "2ba5999386f6505e587490f29ed698e778effbb737e9492ec0a8bd338971d1ec",68 "language": "Jupyter",69 "lines": 315,70 "truncated": false,71 "block": 2,72 "row": 108173 },74 {75 "path": "examples/3D/3_prediction.ipynb",76 "sha256": "14f50616a7b11b7e94a71e9dec5da3fdbd044a7e91c2373f763b1f1654208431",77 "language": "Jupyter",78 "lines": 138,79 "truncated": false,80 "block": 2,81 "row": 103382 },83 {84 "path": "examples/other2D/1_data.ipynb",85 "sha256": "4b41b438c9a78d68ae56e7b33c13c01e82ed3bfa7e03a5f98d0e35312722f3b5",86 "language": "Jupyter",87 "lines": 161,88 "truncated": false,89 "block": 2,90 "row": 103291 },92 {93 "path": "examples/other2D/2_training.ipynb",94 "sha256": "b963c6cd9a7eefb11d37077707e2a3c6d58d92f331f927c36baddeabc26d6d8d",95 "language": "Jupyter",96 "lines": 190,97 "truncated": false,98 "block": 2,99 "row": 1049100 },101 {102 "path": "examples/other2D/3_prediction.ipynb",103 "sha256": "f2b1e6d58ec9649d64ccde18bc40567d46967953f7a66481442e35e025d421da",104 "language": "Jupyter",105 "lines": 155,106 "truncated": false,107 "block": 2,108 "row": 1042109 },110 {111 "path": "examples/other2D/bioimageio.ipynb",112 "sha256": "c910e5ed83d3a249f4031954ec7727e0ff5c89d9d657958e8e27ce1e314dc9fd",113 "language": "Jupyter",114 "lines": 97,115 "truncated": false,116 "block": 2,117 "row": 1023118 },119 {120 "path": "examples/other2D/export_imagej_rois.ipynb",121 "sha256": "4aad15ee122eca883e13ebdfab6e1f5c982acc98b0b9dcc5988e256ca4fada8e",122 "language": "Jupyter",123 "lines": 91,124 "truncated": false,125 "block": 2,126 "row": 1013127 },128 {129 "path": "examples/other2D/multiclass.ipynb",130 "sha256": "fe6a1548b4c047c4ec549598779f9ce07cea92a9be4e9487b66d3fe3a875820b",131 "language": "Jupyter",132 "lines": 383,133 "truncated": false,134 "block": 2,135 "row": 1088136 },137 {138 "path": "examples/other2D/predict_big_data.ipynb",139 "sha256": "38f562f616b715d643eaa51bcc547ab04546dce1fa0cfa01dcd01729343ea2af",140 "language": "Jupyter",141 "lines": 198,142 "truncated": false,143 "block": 2,144 "row": 1051145 },146 {147 "path": "extras/stardist_example_2D_colab.ipynb",148 "sha256": "467247d46afcfa1c35ed855573bd88b8c8dce95f6c2cc0aae1ee2737dcc35e3c",149 "language": "Jupyter",150 "lines": 429,151 "truncated": false,152 "block": 2,153 "row": 1093154 },155 {156 "path": "setup.py",157 "sha256": "36edc5a1a59030ef81b79890e443dba037d5f7a85252c9678ce050fabd5a6afe",158 "language": "Python",159 "lines": 170,160 "truncated": false,161 "block": 2,162 "row": 1991163 },164 {165 "path": "stardist/__init__.py",166 "sha256": "7e89c233068a12edb2a7464d0477383c79999ab83c5ab298c314ad8e676f635a",167 "language": "Python",168 "lines": 30,169 "truncated": false,170 "block": 2,171 "row": 1747172 },173 {174 "path": "stardist/big.py",175 "sha256": "85390c50e77a3102482eb7c6d4fc87fab070caae845de00891e755e5c3383832",176 "language": "Python",177 "lines": 624,178 "truncated": false,179 "block": 2,180 "row": 2189181 },182 {183 "path": "stardist/bioimageio_utils.py",184 "sha256": "32af04843436ee11ee251813fbba753cb5857e19aa0fabd87a3d3095cc3ccc31",185 "language": "Python",186 "lines": 494,187 "truncated": false,188 "block": 2,189 "row": 2171190 },191 {192 "path": "stardist/data/__init__.py",193 "sha256": "b48e9b332d71ba7cd039d9c5e8a216d929c4b107093193033a6e47528b39cf83",194 "language": "Python",195 "lines": 39,196 "truncated": false,197 "block": 2,198 "row": 1706199 },200 {201 "path": "stardist/geometry/__init__.py",202 "sha256": "487ef9103396dabe1a7579b99bfa03cd9311ea7245ab096c6456b6022a07280b",203 "language": "Python",204 "lines": 10,205 "truncated": false,206 "block": 2,207 "row": 1645208 },209 {210 "path": "stardist/geometry/geom2d.py",211 "sha256": "7f917c976934f76438a2d38d9511b86782c1d402e23a3536b68de6b166769988",212 "language": "Python",213 "lines": 215,214 "truncated": false,215 "block": 2,216 "row": 2017217 },218 {219 "path": "stardist/geometry/geom3d.py",220 "sha256": "7a53a7f3864fe8da9bfa8e9a5cd9c9e2079d50f9ad295e4d14d8a10e290a30f1",221 "language": "Python",222 "lines": 349,223 "truncated": false,224 "block": 2,225 "row": 2111226 },227 {228 "path": "stardist/lib/external/clipper/clipper.cpp",229 "sha256": "078673c9dbacdf6ed8d46eb0875378f6118b9356e66993065375f064e2914038",230 "language": "C++",231 "lines": 4629,232 "truncated": false,233 "block": 2,234 "row": 486235 },236 {237 "path": "stardist/lib/external/qhull_src/src/libqhull_r/geom2_r.c",238 "sha256": "66f43d43313bc2eedce2773864265efcb61ecb3eb70fab9e8a7839df6eee435a",239 "language": "C",240 "lines": 2268,241 "truncated": false,242 "block": 2,243 "row": 68244 },245 {246 "path": "stardist/lib/external/qhull_src/src/libqhull_r/geom_r.c",247 "sha256": "397d6396527433916503bf622ab3c6055dbc6a28aae632e6a2c867d17bfea3f1",248 "language": "C",249 "lines": 1273,250 "truncated": false,251 "block": 2,252 "row": 63253 },254 {255 "path": "stardist/lib/external/qhull_src/src/libqhull_r/geom_r.h",256 "sha256": "20d395ea93ba4bcc81556a02cee9d27147e8e044d8cd01ab97f03974283a06a7",257 "language": "C/C++",258 "lines": 189,259 "truncated": false,260 "block": 2,261 "row": 881262 },263 {264 "path": "stardist/lib/external/qhull_src/src/libqhull_r/global_r.c",265 "sha256": "f902776f52438d7dfb5450ba22e699f67c9a41891503dd28169d55dba13fd41b",266 "language": "C",267 "lines": 2129,268 "truncated": false,269 "block": 2,270 "row": 69271 },272 {273 "path": "stardist/lib/external/qhull_src/src/libqhull_r/io_r.c",274 "sha256": "9da4b8675c640432f7a4c04b4bfb86745dde97cb33645e9386cf1b97cd8e9b6c",275 "language": "C",276 "lines": 4115,277 "truncated": false,278 "block": 2,279 "row": 70280 },281 {282 "path": "stardist/lib/external/qhull_src/src/libqhull_r/io_r.h",283 "sha256": "18ebdb0d5af3dc6a909492b5b2591965f38f269aae8039cdb28512b984c8500a",284 "language": "C/C++",285 "lines": 168,286 "truncated": false,287 "block": 2,288 "row": 884289 },290 {291 "path": "stardist/lib/external/qhull_src/src/libqhull_r/libqhull_r.c",292 "sha256": "dd2c0a8c8e6137b67ca8aac6748172585c35c9eea32b3955b23b17db2951485d",293 "language": "C",294 "lines": 1654,295 "truncated": false,296 "block": 2,297 "row": 67298 },299 {300 "path": "stardist/lib/external/qhull_src/src/libqhull_r/libqhull_r.h",301 "sha256": "a4cd29a9e45a1bc2120e213198d75f754735305eb7c1559b6c61337d7260777e",302 "language": "C/C++",303 "lines": 1188,304 "truncated": false,305 "block": 2,306 "row": 907307 },308 {309 "path": "stardist/lib/external/qhull_src/src/libqhull_r/mem_r.c",310 "sha256": "104de04ff5f3664f8cfad66e2caa1718895ac058e72302f79c979d4a1ede3cdb",311 "language": "C",312 "lines": 562,313 "truncated": false,314 "block": 2,315 "row": 51316 },317 {318 "path": "stardist/lib/external/qhull_src/src/libqhull_r/mem_r.h",319 "sha256": "fd35c73c6b013a1668b3d50d2ddf86ca4e7ec96d8595127c3770e2da4b06d66a",320 "language": "C/C++",321 "lines": 236,322 "truncated": false,323 "block": 2,324 "row": 886325 },326 {327 "path": "stardist/lib/external/qhull_src/src/libqhull_r/merge_r.c",328 "sha256": "0bcbf0dfdbe917cc97f5b0f03eac971211c396a10c0efe35e66b9c928a795ddf",329 "language": "C",330 "lines": 5165,331 "truncated": true,332 "block": 2,333 "row": 72334 },335 {336 "path": "stardist/lib/external/qhull_src/src/libqhull_r/merge_r.h",337 "sha256": "6ba4c311adbd65e961ac850157cee1d35f235f4baa4995e4112dfce5e8e87c5d",338 "language": "C/C++",339 "lines": 251,340 "truncated": false,341 "block": 2,342 "row": 893343 },344 {345 "path": "stardist/lib/external/qhull_src/src/libqhull_r/poly2_r.c",346 "sha256": "394551afba8fc6893e3cf4a4de0f9a4e3bee4788fcb9d8962dccbf586dd964af",347 "language": "C",348 "lines": 3699,349 "truncated": false,350 "block": 2,351 "row": 71352 },353 {354 "path": "stardist/lib/external/qhull_src/src/libqhull_r/poly_r.c",355 "sha256": "bf40dac45d1855a591e43d453cbe7abf5c99e0d0e00f83340de9072e165ac59a",356 "language": "C",357 "lines": 1317,358 "truncated": false,359 "block": 2,360 "row": 64361 },362 {363 "path": "stardist/lib/external/qhull_src/src/libqhull_r/poly_r.h",364 "sha256": "de5ba9e302475c12b75b0ca488a9fb2161753598561e5a9057fafe2cf3b1194c",365 "language": "C/C++",366 "lines": 306,367 "truncated": false,368 "block": 2,369 "row": 892370 },371 {372 "path": "stardist/lib/external/qhull_src/src/libqhull_r/qhull_ra.h",373 "sha256": "72b1dd0512e44e541a51b40198b460cf5db81bd422b6639c75ae97e2b767e4c9",374 "language": "C/C++",375 "lines": 161,376 "truncated": false,377 "block": 2,378 "row": 864379 },380 {381 "path": "stardist/lib/external/qhull_src/src/libqhull_r/qset_r.c",382 "sha256": "96f5a2a2f62252722b03e707e77dcfc45490be0323238b0117d3ee23e082e3b3",383 "language": "C",384 "lines": 1340,385 "truncated": false,386 "block": 2,387 "row": 62388 },389 {390 "path": "stardist/lib/external/qhull_src/src/libqhull_r/qset_r.h",391 "sha256": "d5fba3e441766e0538a3c451f94df4e4aee6a1276cb537577b18460dfc3588a8",392 "language": "C/C++",393 "lines": 504,394 "truncated": false,395 "block": 2,396 "row": 897397 },398 {399 "path": "stardist/lib/external/qhull_src/src/libqhull_r/random_r.c",400 "sha256": "1846c52158a88520b248b280436bd8bbf5e42b810e1c04ca4205e14ffea23d17",401 "language": "C",402 "lines": 248,403 "truncated": false,404 "block": 2,405 "row": 22406 },407 {408 "path": "stardist/lib/external/qhull_src/src/libqhull_r/random_r.h",409 "sha256": "291d98b757b1018532d6e8cfff6d289cbb85329ebb85a531376bcec9eb69ec43",410 "language": "C/C++",411 "lines": 41,412 "truncated": false,413 "block": 2,414 "row": 657415 },416 {417 "path": "stardist/lib/external/qhull_src/src/libqhull_r/rboxlib_r.c",418 "sha256": "b3cec933f5b27094d06407ccf45f94aca8f966506c50f07c3ee426942eb2f608",419 "language": "C",420 "lines": 842,421 "truncated": false,422 "block": 2,423 "row": 53424 },425 {426 "path": "stardist/lib/external/qhull_src/src/libqhull_r/stat_r.c",427 "sha256": "e66d8781093fe67b68277a4b0768aa749aac31e186cfe804324b104eb5bdf276",428 "language": "C",429 "lines": 683,430 "truncated": false,431 "block": 2,432 "row": 60433 },434 {435 "path": "stardist/lib/external/qhull_src/src/libqhull_r/stat_r.h",436 "sha256": "032d63f7c7c55a37485fd3534556c2d374d12b91ed48e95223f4f8d1092a0436",437 "language": "C/C++",438 "lines": 533,439 "truncated": false,440 "block": 2,441 "row": 894442 },443 {444 "path": "stardist/lib/external/qhull_src/src/libqhull_r/user_r.c",445 "sha256": "e213dcdd1b15178a434020f46c334a53eaaabedb0bf4a6989a3b8ad264ba2b4b",446 "language": "C",447 "lines": 535,448 "truncated": false,449 "block": 2,450 "row": 49451 },452 {453 "path": "stardist/lib/external/qhull_src/src/libqhull_r/user_r.h",454 "sha256": "597c80f0d9bcbc51933180846699039b86f4205d852f9a8118f5a3641fb132ff",455 "language": "C/C++",456 "lines": 994,457 "truncated": false,458 "block": 2,459 "row": 905460 },461 {462 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Coordinates.cpp",463 "sha256": "6fafdff10f8a5eebc924654d77567e514ca74d6e0c09a3adfc53f121e5570ea1",464 "language": "C++",465 "lines": 198,466 "truncated": false,467 "block": 2,468 "row": 217469 },470 {471 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Coordinates.h",472 "sha256": "5217ef2a584dd629c3dcc9fdcdb079ff21468d51342634045656e16e4acf2804",473 "language": "C/C++",474 "lines": 303,475 "truncated": false,476 "block": 2,477 "row": 899478 },479 {480 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/PointCoordinates.cpp",481 "sha256": "c2d25562ee5e142d3dd4393d2778099c1afa3156cdc7b5c18e2eb5a0b9f0f665",482 "language": "C++",483 "lines": 348,484 "truncated": false,485 "block": 2,486 "row": 337487 },488 {489 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/PointCoordinates.h",490 "sha256": "5a6fe2135245780d49d4276390e851e862dcc21b5f121e7e23b0e8d422e08c03",491 "language": "C/C++",492 "lines": 161,493 "truncated": false,494 "block": 2,495 "row": 880496 },497 {498 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Qhull.cpp",499 "sha256": "b181caf3d6cff3b0e643052f627ed99254c7e684e4ed0c22c9cd553b667c843b",500 "language": "C++",501 "lines": 352,502 "truncated": false,503 "block": 2,504 "row": 368505 },506 {507 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Qhull.h",508 "sha256": "9eb1a34e113c5226c8f9200eccd53548ebe6d1e469095a90374e86771e569e52",509 "language": "C/C++",510 "lines": 132,511 "truncated": false,512 "block": 2,513 "row": 872514 },515 {516 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/QhullError.h",517 "sha256": "528f06a57024d91b8cac119459b5de5a74889cb42bffbb6eed52676897ce8b69",518 "language": "C/C++",519 "lines": 62,520 "truncated": false,521 "block": 2,522 "row": 765523 },524 {525 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/QhullFacet.cpp",526 "sha256": "e7a523f7cb2aedc31bae3b53209073ea2b6540cea6ad0401df387316916a45a5",527 "language": "C++",528 "lines": 519,529 "truncated": false,530 "block": 2,531 "row": 401532 },533 {534 "path": "stardist/lib/external/qhull_src/src/libqhullcpp/QhullFacet.h",535 "sha256": "ff53dd57be86ed2b3b80d4134f1efa9e86127b4b164a1f8bd7453e8a5c3d16ed",536 "language": "C/C++",537 "lines": 151,538 "truncated": false,539 "block": 2,540 "row": 875541 }542 ]543}