OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/alexiatiberi/microneuseg",4 "url": "https://github.com/AlexiaTiberi/MicroNeuSeg",5 "host": "github.com",6 "commit": "cdb4747c16f3f08410127ed7334d7accaec59038",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "0_segment_single_folder.ipynb",13 "sha256": "a2fc56bfe220a03a54210d4e03a76c6398a8c18d41152da4570442629d8e4479",14 "language": "Jupyter",15 "lines": 24,16 "truncated": false,17 "block": 14,18 "row": 1480819 },20 {21 "path": "1_segment_all.py",22 "sha256": "ae799cb3ed66065420f227bdd5365d7ee819f75ad458c65e51abb51e4663c1fe",23 "language": "Python",24 "lines": 27,25 "truncated": false,26 "block": 15,27 "row": 853628 },29 {30 "path": "1_segment_all_folders.ipynb",31 "sha256": "347f6539abd11a5fba45cfc6d40671b77aff71cf4a3ff9e3dfe037360b099ccf",32 "language": "Jupyter",33 "lines": 32,34 "truncated": false,35 "block": 14,36 "row": 1482337 },38 {39 "path": "2_masking.py",40 "sha256": "aa54c383f17a1303735e114ce1446f3def4f9be4f0ef06ab4334bc896eca366c",41 "language": "Python",42 "lines": 40,43 "truncated": false,44 "block": 15,45 "row": 872246 },47 {48 "path": "3_filter_all_folders.py",49 "sha256": "054209246ad0422aa82c64ad69efabf964c3d1736010f543668467926498b967",50 "language": "Python",51 "lines": 60,52 "truncated": false,53 "block": 15,54 "row": 1145655 },56 {57 "path": "4_extract_data.py",58 "sha256": "adc972ea0e9f9bb9226eb69736464e6088916d59570316ed6252ceeffd57f4d0",59 "language": "Python",60 "lines": 36,61 "truncated": false,62 "block": 15,63 "row": 927464 },65 {66 "path": "LICENSE",67 "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",68 "language": "License",69 "lines": 674,70 "truncated": false,71 "block": 1,72 "row": 223573 },74 {75 "path": "README.md",76 "sha256": "b723c28caf31dbe695c0fdf37d8b51dcf4070ea08aaa71ceb839411cc84aa1d1",77 "language": "Text",78 "lines": 107,79 "truncated": false,80 "block": 16,81 "row": 750782 },83 {84 "path": "config.py",85 "sha256": "d80146e2f2f719715a5a550dc01d8aa0e75753bc819cec66107859d165c47856",86 "language": "Python",87 "lines": 28,88 "truncated": false,89 "block": 15,90 "row": 778791 },92 {93 "path": "src/analysis.py",94 "sha256": "0719d5d31d1cbacc6503ca04e592e1be6a0d3dfffcfe71f3ebec2213e86356f7",95 "language": "Python",96 "lines": 358,97 "truncated": false,98 "block": 15,99 "row": 24699100 },101 {102 "path": "src/analysis2.py",103 "sha256": "5accc73dcaff52cd86de88d545643c47fe118742b7c941034a11d873bbd9f9f6",104 "language": "Python",105 "lines": 332,106 "truncated": false,107 "block": 15,108 "row": 24638109 },110 {111 "path": "src/confirmation.py",112 "sha256": "205e1ba5b2269c5e34c98e271062a3c0626a500d87f973b60bd59b9c07788d3d",113 "language": "Python",114 "lines": 10,115 "truncated": false,116 "block": 15,117 "row": 6508118 },119 {120 "path": "src/export.py",121 "sha256": "59223eb4d143e8a172ef0e33c0e8900b5d17fcce07a55c66c80a34abfc59a291",122 "language": "Python",123 "lines": 6,124 "truncated": false,125 "block": 15,126 "row": 6122127 },128 {129 "path": "src/filtercoordinates.py",130 "sha256": "8bec67b1557147153b90f820c8690154a069739da37386a70bc9acf75365af0f",131 "language": "Python",132 "lines": 9,133 "truncated": false,134 "block": 15,135 "row": 6639136 },137 {138 "path": "src/filtering.py",139 "sha256": "88be9c5901673f78fe8c33e543f8093a04755b448181f7591622b9308f6c1865",140 "language": "Python",141 "lines": 31,142 "truncated": false,143 "block": 15,144 "row": 8293145 },146 {147 "path": "src/masking.py",148 "sha256": "3616ac736223c0d4987b7eb62471f267ebf5cf4c1089557b4e2c83a611d10157",149 "language": "Python",150 "lines": 65,151 "truncated": false,152 "block": 15,153 "row": 11545154 },155 {156 "path": "src/masking_csv.py",157 "sha256": "ccf951c1143a903431da64e93e7a75641fb359a474919da8cdb6688075e9608d",158 "language": "Python",159 "lines": 60,160 "truncated": false,161 "block": 15,162 "row": 12845163 },164 {165 "path": "src/preprocessing.py",166 "sha256": "a78760195667a3b38356ffc5cfed6ec42ccb71c6539293d6606be649133d6fb9",167 "language": "Python",168 "lines": 66,169 "truncated": false,170 "block": 15,171 "row": 10512172 },173 {174 "path": "src/segment_single_folder.py",175 "sha256": "ff37487d6598b28638dca3a808cf043dbd0a6d66d2bc31be1a11ee6db1a23982",176 "language": "Python",177 "lines": 99,178 "truncated": false,179 "block": 15,180 "row": 16590181 },182 {183 "path": "src/segmentation.py",184 "sha256": "0073be5010c4f116f163c1866e48450e4c84c36a08345c84b1769af12a61c9cc",185 "language": "Python",186 "lines": 198,187 "truncated": false,188 "block": 15,189 "row": 20975190 },191 {192 "path": "src/visualization.py",193 "sha256": "fb4179dda13295a36c3f123e1739032c9756834766d45dd9c62acb7a01675225",194 "language": "Python",195 "lines": 55,196 "truncated": false,197 "block": 15,198 "row": 10275199 },200 {201 "path": "tests/analysis_boot.py",202 "sha256": "3c20a294b96d3500dabdbabe5137598fffaaac96438cd5106e05b0ef4d01e5bc",203 "language": "Python",204 "lines": 246,205 "truncated": false,206 "block": 15,207 "row": 22361208 },209 {210 "path": "tests/changing_name.py",211 "sha256": "0687c4c49708f2e40b4906949af612d3572fa71170a9b033c6ae5fe16f459207",212 "language": "Python",213 "lines": 63,214 "truncated": false,215 "block": 15,216 "row": 13159217 },218 {219 "path": "tests/optional_IMPORTANT_renaming_imagefiles.ipynb",220 "sha256": "6ff7b666558d9ef082e0100be5fa57f045c0be2f2e51d7ae22fdc543d9cfe6ff",221 "language": "Jupyter",222 "lines": 64,223 "truncated": false,224 "block": 14,225 "row": 15069226 },227 {228 "path": "tests/optional_bootstrap_loop.py",229 "sha256": "c9ff6c51b07df8ee6eb6a1ef5dc627b4f7554e6f342e82658f98a4ff84202594",230 "language": "Python",231 "lines": 74,232 "truncated": false,233 "block": 15,234 "row": 12849235 },236 {237 "path": "tests/optional_check_filtering.py",238 "sha256": "4cdd559dee12c7997e91e8a72b5e2b7ce12809dc2282df29268b6ff439c83b6b",239 "language": "Python",240 "lines": 62,241 "truncated": false,242 "block": 15,243 "row": 11427244 },245 {246 "path": "tests/test_time_process.py",247 "sha256": "86944d479a768d72f4049c6de3d095245af61ef522b0cfceb304f1793d668e47",248 "language": "Python",249 "lines": 52,250 "truncated": false,251 "block": 15,252 "row": 10796253 }254 ]255}