Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__deeplearner87__umint.json435 linesDownload Raw Back to 99
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/deeplearner87/umint",4 "url": "https://github.com/deeplearner87/UMINT",5 "host": "github.com",6 "commit": "3a588f834dc74879394466147e40378f2d5ad95c",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "Benchmarking/ComparativeAnalysis/MALT10k_Seurat_MOFA2_TotalVI_hiearchical.ipynb",13   "sha256": "9b821fc1a8bf322dc8d20c3e83f4cf11f93ff1a18ab6f803975531492aabf462",14   "language": "Jupyter",15   "lines": 84,16   "truncated": false,17   "block": 5,18   "row": 1625219  },20  {21   "path": "Benchmarking/ComparativeAnalysis/MALT10k_Seurat_MOFA2_TotalVI_kmeans.ipynb",22   "sha256": "e0f287228f8ae6b4ad8154767b0e173c3965ec313cec329a04a48e6c612173ef",23   "language": "Jupyter",24   "lines": 84,25   "truncated": false,26   "block": 5,27   "row": 1624828  },29  {30   "path": "Benchmarking/ComparativeAnalysis/bmcite30k_Seurat_MOFA2_TotalVI_hiearchical.ipynb",31   "sha256": "54b8c9735833c872b3a72ec05d07bf269597101b9f913f99abfbd60f29e39e1a",32   "language": "Jupyter",33   "lines": 84,34   "truncated": false,35   "block": 5,36   "row": 1626137  },38  {39   "path": "Benchmarking/ComparativeAnalysis/bmcite30k_Seurat_MOFA2_TotalVI_kmeans.ipynb",40   "sha256": "50bf57f98dd7a9e848096c66041b8aa830a33f08ea4ad228eecf97f0c93834f7",41   "language": "Jupyter",42   "lines": 84,43   "truncated": false,44   "block": 5,45   "row": 1625746  },47  {48   "path": "Benchmarking/ComparativeAnalysis/cbmc8k_Seurat_MOFA2_TotalVI_hiearchical.ipynb",49   "sha256": "bf6d2a437dc80203aa497ba345fb6c94b19f030dcd7d0b5cde75eaeb83a888f2",50   "language": "Jupyter",51   "lines": 84,52   "truncated": false,53   "block": 5,54   "row": 1624955  },56  {57   "path": "Benchmarking/ComparativeAnalysis/cbmc8k_Seurat_MOFA2_TotalVI_kmeans.ipynb",58   "sha256": "eeff88beef2684aeefd31f88b608afc0c9003a53ac6531960a9302c01d7be7a1",59   "language": "Jupyter",60   "lines": 84,61   "truncated": false,62   "block": 5,63   "row": 1624664  },65  {66   "path": "Benchmarking/MOFA2/LIHC_Bulk_MOFA2.R",67   "sha256": "c4fb7361c6f7dca96b480c984b8d7fd8f68c73b66d046e7208d1aece00e61843",68   "language": "R",69   "lines": 81,70   "truncated": false,71   "block": 8,72   "row": 223273  },74  {75   "path": "Benchmarking/MOFA2/MALT10k_MOFA2.R",76   "sha256": "23cc5a68a286b77dcd5177290c5564c1dc2732efeb824563a8e6550595a1c1f8",77   "language": "R",78   "lines": 76,79   "truncated": false,80   "block": 8,81   "row": 213782  },83  {84   "path": "Benchmarking/MOFA2/bmcite30k_MOFA2.R",85   "sha256": "da41f4c3c2deda3eab7fb021b10da6d7c57e1afc9e0779fab89a5f2795c39d53",86   "language": "R",87   "lines": 78,88   "truncated": false,89   "block": 8,90   "row": 216491  },92  {93   "path": "Benchmarking/MOFA2/cbmc8k_MOFA2.R",94   "sha256": "ca1b53ca85e11c66ed273a5395e092a6082f5a12b37efdca708f0e29453cc587",95   "language": "R",96   "lines": 78,97   "truncated": false,98   "block": 8,99   "row": 2154100  },101  {102   "path": "Benchmarking/Seuratv4/MALT10k_Seurat.R",103   "sha256": "9abf677ee8519efa80c91881c5e1645949ed7433d38bf1a90e4a45e5d8535f54",104   "language": "R",105   "lines": 44,106   "truncated": false,107   "block": 8,108   "row": 1832109  },110  {111   "path": "Benchmarking/Seuratv4/bmcite30k_Seurat.R",112   "sha256": "e8d013a472daa9ad5ef8afd43da56d5d22abff1d01abd62070536478f25d883a",113   "language": "R",114   "lines": 38,115   "truncated": false,116   "block": 8,117   "row": 1814118  },119  {120   "path": "Benchmarking/Seuratv4/cbmc8k_Seurat.R",121   "sha256": "dfc52dea0cd225afb8451f7da9ad44ad92a49de6d5cb0fce31f34071636b06b7",122   "language": "R",123   "lines": 33,124   "truncated": false,125   "block": 8,126   "row": 1645127  },128  {129   "path": "Benchmarking/TotalVI/MALT10k_TotalVI.ipynb",130   "sha256": "da1bc21c46995193ea0f9bf2db98c85443aad8c57b66c638c2f1886a13dc8355",131   "language": "Jupyter",132   "lines": 103,133   "truncated": false,134   "block": 5,135   "row": 16256136  },137  {138   "path": "Benchmarking/TotalVI/bmcite30k_TotalVI.ipynb",139   "sha256": "5f437baf98aaa605e0a891175520f2af4daab541b6d406a82d2ec61f0c8c0538",140   "language": "Jupyter",141   "lines": 109,142   "truncated": false,143   "block": 5,144   "row": 16277145  },146  {147   "path": "Benchmarking/TotalVI/cbmc8k_TotalVI.ipynb",148   "sha256": "cb96933f6567100046080d03a80edd90edb48e917cd64c7afc774b948d397d31",149   "language": "Jupyter",150   "lines": 106,151   "truncated": false,152   "block": 5,153   "row": 16280154  },155  {156   "path": "LICENSE",157   "sha256": "2db476a25c476b3b02d8aa01abbc88a47946e143f4a31e59dc0b80b76f176190",158   "language": "License",159   "lines": 21,160   "truncated": false,161   "block": 6,162   "row": 1584163  },164  {165   "path": "Preprocessing/CBMC_8k_Preprocessing.R",166   "sha256": "dc18d75526d12c249a65be012caddffadd3cc6abbb69eb7cd9886d363b3a8494",167   "language": "R",168   "lines": 39,169   "truncated": false,170   "block": 8,171   "row": 1784172  },173  {174   "path": "Preprocessing/MALT10k_Preprocessing.R",175   "sha256": "67ad479d68cbc7c8c6fa80365d6f4597bcfd43ddd882fdf41350627d1c0319f2",176   "language": "R",177   "lines": 45,178   "truncated": false,179   "block": 8,180   "row": 1909181  },182  {183   "path": "Preprocessing/bmcite30k_Preprocessing.R",184   "sha256": "2bfd4cdacecd95bb760f39d3c7be6d26a801b724ce3733616aa269bcd1170990",185   "language": "R",186   "lines": 40,187   "truncated": false,188   "block": 8,189   "row": 1775190  },191  {192   "path": "Preprocessing/kotliarov50k_Batch_Integration_SCTransform.ipynb",193   "sha256": "2931df838e5b7769cbecdf96936a529df999816ce99b8d871f85de841e129a20",194   "language": "Jupyter",195   "lines": 129,196   "truncated": false,197   "block": 5,198   "row": 16576199  },200  {201   "path": "Preprocessing/kotliarov50k_Preprocessing.ipynb",202   "sha256": "b9c5c2caac88f71be640721b9c60e71134f522ae67e53626c31ccaaca8ea0558",203   "language": "Jupyter",204   "lines": 102,205   "truncated": false,206   "block": 5,207   "row": 16317208  },209  {210   "path": "Preprocessing/pbmc10k_ATAC_Preprocessing.ipynb",211   "sha256": "08f720c0cffb629fd28cc5dfe6a7854618e10108fb0689f4e8b7871be60b484e",212   "language": "Jupyter",213   "lines": 319,214   "truncated": false,215   "block": 5,216   "row": 17491217  },218  {219   "path": "Preprocessing/pbmc10k_RNA_Preprocessing.ipynb",220   "sha256": "5d0a6cfc8ed565e3f1973a0603fa2251c7c743dfe1ace0de1eee949c6e4a4dbe",221   "language": "Jupyter",222   "lines": 239,223   "truncated": false,224   "block": 5,225   "row": 17100226  },227  {228   "path": "Proposed/LIHC_bulkMultiOmics_UMINT_AE.ipynb",229   "sha256": "3a345d32007b4770876e99f44bb445852f7ffb8ce5571ee60e637d8ee6621af0",230   "language": "Jupyter",231   "lines": 237,232   "truncated": false,233   "block": 6,234   "row": 1058235  },236  {237   "path": "Proposed/MALT10k_AE.ipynb",238   "sha256": "5592b738ca8a425db2627657919598d0f2dcb20c7927540e655f9bff1fbc552a",239   "language": "Jupyter",240   "lines": 143,241   "truncated": false,242   "block": 6,243   "row": 984244  },245  {246   "path": "Proposed/MALT10k_DAE.ipynb",247   "sha256": "5ee459259ff70891108259d8c6fe604f89e3fda2cb154cba6d2ebdc1cd345c5f",248   "language": "Jupyter",249   "lines": 143,250   "truncated": false,251   "block": 6,252   "row": 986253  },254  {255   "path": "Proposed/MALT10k_SAE.ipynb",256   "sha256": "74a75d9b60c3a956bc141e6f3699e461166efbbef70905b87105d7d085be447a",257   "language": "Jupyter",258   "lines": 143,259   "truncated": false,260   "block": 6,261   "row": 987262  },263  {264   "path": "Proposed/MALT10k_UMINT.ipynb",265   "sha256": "1a10d0cea0239739a876117b1bb258e0e97e3495027880e5fe786704cfdd5fd0",266   "language": "Jupyter",267   "lines": 139,268   "truncated": false,269   "block": 6,270   "row": 993271  },272  {273   "path": "Proposed/MALT10k_UMINT_AE_Time_Comp.ipynb",274   "sha256": "41c8ee6914d84c96d68c2262e5294ed03f417546dd81b95692cc56801530049c",275   "language": "Jupyter",276   "lines": 144,277   "truncated": false,278   "block": 6,279   "row": 982280  },281  {282   "path": "Proposed/autoencoder.py",283   "sha256": "276094b1fe333c11be8b0041737290cb0700f4d6c06e80d66b1f29f45be3adc3",284   "language": "Python",285   "lines": 215,286   "truncated": false,287   "block": 7,288   "row": 3139289  },290  {291   "path": "Proposed/bmcite30k_AE.ipynb",292   "sha256": "de12b6eb5a37bd4123fa0e5186f14b51d1276b3eeed4a8b94ff0da5957b823de",293   "language": "Jupyter",294   "lines": 143,295   "truncated": false,296   "block": 6,297   "row": 985298  },299  {300   "path": "Proposed/bmcite30k_DAE.ipynb",301   "sha256": "6ca8abbe766f3b8c2bbb7efeb0461f2e450ec62338021a34475491ff75eb0d95",302   "language": "Jupyter",303   "lines": 143,304   "truncated": false,305   "block": 6,306   "row": 989307  },308  {309   "path": "Proposed/bmcite30k_SAE.ipynb",310   "sha256": "09be2e0acfd40d28170945d1eae2acb3dfbce412ae2be498fae97818aad028f3",311   "language": "Jupyter",312   "lines": 143,313   "truncated": false,314   "block": 6,315   "row": 988316  },317  {318   "path": "Proposed/bmcite30k_UMINT.ipynb",319   "sha256": "2aa7b07141cc3b4ac1eab072aeefe836791588f4dafbef8658812360c18e0e98",320   "language": "Jupyter",321   "lines": 139,322   "truncated": false,323   "block": 6,324   "row": 994325  },326  {327   "path": "Proposed/bmcite30k_UMINT_AE_Time_Comp.ipynb",328   "sha256": "9b9a46147d510f90080a10b94313c039ea45eba4367ed13f818bbd202a5d9ee7",329   "language": "Jupyter",330   "lines": 141,331   "truncated": false,332   "block": 6,333   "row": 977334  },335  {336   "path": "Proposed/cbmc8k_AE.ipynb",337   "sha256": "72f283dfeaab004d547c93b80189e01a2fafd30f6ffb601f3aa07cb842dccc7f",338   "language": "Jupyter",339   "lines": 143,340   "truncated": false,341   "block": 6,342   "row": 990343  },344  {345   "path": "Proposed/cbmc8k_DAE.ipynb",346   "sha256": "0d89559321fdeb6c31649707fe90bb9355dccd3eba31ceb1df638e8cb8b9f04a",347   "language": "Jupyter",348   "lines": 143,349   "truncated": false,350   "block": 6,351   "row": 991352  },353  {354   "path": "Proposed/cbmc8k_SAE.ipynb",355   "sha256": "89c3cd729e0820dbf59385a297aa2dd20954557fe91f03a4c6f757469dbadfd2",356   "language": "Jupyter",357   "lines": 143,358   "truncated": false,359   "block": 6,360   "row": 992361  },362  {363   "path": "Proposed/cbmc8k_UMINT.ipynb",364   "sha256": "d7a70221c8e57783f778467d6c4b96bee829d50c75779d2019aee84c1f8110be",365   "language": "Jupyter",366   "lines": 139,367   "truncated": false,368   "block": 6,369   "row": 996370  },371  {372   "path": "Proposed/cbmc8k_UMINT_AE_Time_Comp.ipynb",373   "sha256": "90bc9ef536be1282bdd94516a1d8d3bb304e401e0f9794baccfc623504d3dad3",374   "language": "Jupyter",375   "lines": 144,376   "truncated": false,377   "block": 6,378   "row": 981379  },380  {381   "path": "Proposed/kotliarov50k_UMINT.ipynb",382   "sha256": "d2a0e5f5b6165fd2a6da41ef1c2ccad410ab5dd9df34d9fecbaa09cf288fc8c6",383   "language": "Jupyter",384   "lines": 167,385   "truncated": false,386   "block": 6,387   "row": 1013388  },389  {390   "path": "Proposed/mlp.py",391   "sha256": "c02b29de528b0b481b1d7a883630cc014bd4fca806b35bdbdf2f914b65d56a21",392   "language": "Python",393   "lines": 33,394   "truncated": false,395   "block": 6,396   "row": 27644397  },398  {399   "path": "Proposed/pbmc10k_UMINT.ipynb",400   "sha256": "ebed54e0bf57ec831498aa64e95f0da2ed6e7c42805bd9f45f26721bfbd182e8",401   "language": "Jupyter",402   "lines": 171,403   "truncated": false,404   "block": 6,405   "row": 1020406  },407  {408   "path": "Proposed/pbmc10k_UMINT_UMAP.ipynb",409   "sha256": "dad58bff022b7df26afae4c4f8aad0806ef7a5a2894711bc246c372e06d1247d",410   "language": "Jupyter",411   "lines": 134,412   "truncated": false,413   "block": 6,414   "row": 983415  },416  {417   "path": "Proposed/umint.py",418   "sha256": "83a2d8118f54f6bbabaf7a8d09bc39018eb23752f284ba0ab2b4aee3b9e149bf",419   "language": "Python",420   "lines": 60,421   "truncated": false,422   "block": 6,423   "row": 34700424  },425  {426   "path": "README.md",427   "sha256": "180ec5603cfc591b2a24ca5e278599b3b7f23234de90c0bc3d561e9aaa02486a",428   "language": "Text",429   "lines": 91,430   "truncated": false,431   "block": 8,432   "row": 10208433  }434 ]435}