Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face

0likes5.6kdownloads

rootmanifests9agithub.com__comprna__suppa.json

github.com__comprna__suppa.json255 linesDownload Raw Back to 9a

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/comprna/suppa",4 "url": "https://github.com/comprna/SUPPA",5 "host": "github.com",6 "commit": "f41febfb5be8f6257428150e701d187d49d542b0",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE.txt",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE.txt",13   "sha256": "51dd9ad137d9c76888e473c48b4620a67337294d7c3466f01f82aac9796cba39",14   "language": "License",15   "lines": 21,16   "truncated": false,17   "block": 14,18   "row": 1707319  },20  {21   "path": "README.md",22   "sha256": "1be710b3128918b9ddd3944c7585794c997ecb158bc7f9d19561e5a0e1f2ef05",23   "language": "Text",24   "lines": 761,25   "truncated": false,26   "block": 16,27   "row": 774428  },29  {30   "path": "__init__.py",31   "sha256": "5d9a86cddea169cfe7b2f31fd3023205375e7bf864f5c10e9c7692d18b73b157",32   "language": "Python",33   "lines": 7,34   "truncated": false,35   "block": 15,36   "row": 572837  },38  {39   "path": "eventClusterer.py",40   "sha256": "6ebb074a0f5a3c8c5463c86522d8f171d813780402b67d126789f9988ebacd77",41   "language": "Python",42   "lines": 125,43   "truncated": false,44   "block": 15,45   "row": 1700346  },47  {48   "path": "eventGenerator.py",49   "sha256": "5143d90d84fc8bc314ad089fd637930b68c36f249ea1ea9269f521f82f0ceb6b",50   "language": "Python",51   "lines": 112,52   "truncated": false,53   "block": 15,54   "row": 1577355  },56  {57   "path": "fileMerger.py",58   "sha256": "14ba5906b915bfa68386023f557f124507a8e1eca44d930b2e921f1504b5c3d4",59   "language": "Python",60   "lines": 95,61   "truncated": false,62   "block": 15,63   "row": 1218964  },65  {66   "path": "lib/__init__.py",67   "sha256": "8746f00a11f07df183ac90bca056507fbafff775c775c621370ef8940fd9daff",68   "language": "Python",69   "lines": 7,70   "truncated": false,71   "block": 15,72   "row": 573673  },74  {75   "path": "lib/cluster_tools.py",76   "sha256": "268e03bfad53d0de99958ddb84147701d1862f72d1aff105ce61162e517b40cc",77   "language": "Python",78   "lines": 283,79   "truncated": false,80   "block": 15,81   "row": 2173382  },83  {84   "path": "lib/diff_tools.py",85   "sha256": "746f5c746fd4df95250dbaf29bdde960afc4e2dd573ea860b42faf2b0af9613a",86   "language": "Python",87   "lines": 686,88   "truncated": false,89   "block": 15,90   "row": 2558491  },92  {93   "path": "lib/event.py",94   "sha256": "50e3e020df010eb8eac5fda2fb35be403da9edb379d34abdd8b943604a78c373",95   "language": "Python",96   "lines": 650,97   "truncated": false,98   "block": 15,99   "row": 25736100  },101  {102   "path": "lib/gtf_store.py",103   "sha256": "eb352e8e308d65f1c819a7bf82288ff3b9de75c6d01a575963ce7a7c8c80cedd",104   "language": "Python",105   "lines": 234,106   "truncated": false,107   "block": 15,108   "row": 20387109  },110  {111   "path": "lib/optics.py",112   "sha256": "39f0ce4d7d1f2c8b40641159125cbd68cd0cf2e23764ee302190933c41353675",113   "language": "Python",114   "lines": 333,115   "truncated": false,116   "block": 15,117   "row": 22825118  },119  {120   "path": "lib/tools.py",121   "sha256": "9a34697c7ac56f7f83d0235a0bb159a82b5b3e08f98b96489c66e1f6ef704b8f",122   "language": "Python",123   "lines": 537,124   "truncated": false,125   "block": 15,126   "row": 25249127  },128  {129   "path": "lib/var_event.py",130   "sha256": "ceb02cc22386dec7b1b3d9f38cc78bd04089e4208227accde4acf14bbb373c00",131   "language": "Python",132   "lines": 625,133   "truncated": false,134   "block": 15,135   "row": 25670136  },137  {138   "path": "multipleFieldSelection.py",139   "sha256": "af417511f6139d8d8f6d29d9ccc9763ec278999ecbd9f978f10d4d7cca942d17",140   "language": "Python",141   "lines": 131,142   "truncated": false,143   "block": 15,144   "row": 17363145  },146  {147   "path": "psiCalculator.py",148   "sha256": "79cbe208dcc6df606137c33efb39da4334db9c08df78bc3bf6ebd337a56a39c6",149   "language": "Python",150   "lines": 186,151   "truncated": false,152   "block": 15,153   "row": 21221154  },155  {156   "path": "psiPerGene.py",157   "sha256": "b0dff2f8d8fe6f02112df90bffb2974c0c24e75c2a341bac863fd2bab040ac83",158   "language": "Python",159   "lines": 128,160   "truncated": false,161   "block": 15,162   "row": 16105163  },164  {165   "path": "rmats_to_suppa_ids_A3_events.pl",166   "sha256": "ed436706813c66e6c38fcdfc3f317ff0ad6b05d5c307c62a4c1fc49689e6d5b4",167   "language": "Perl",168   "lines": 41,169   "truncated": false,170   "block": 15,171   "row": 5395172  },173  {174   "path": "rmats_to_suppa_ids_A5_events.pl",175   "sha256": "ee70b22e83bed8fdcb030932ae92a089eff46d7a89531e65b365b3ea05f20416",176   "language": "Perl",177   "lines": 44,178   "truncated": false,179   "block": 15,180   "row": 5403181  },182  {183   "path": "rmats_to_suppa_ids_SE_events.pl",184   "sha256": "f2bb3925ae3e6f1bcd9ff332816ca089edf86de287d655ff075e5b04ce7970a8",185   "language": "Perl",186   "lines": 32,187   "truncated": false,188   "block": 15,189   "row": 5389190  },191  {192   "path": "scripts/Volcano_MA_plot.R",193   "sha256": "8ca5f51722fcc229804ba2fc24f8d99f6bd32ef39bf5c6ab87a9335ae0ecdb9d",194   "language": "R",195   "lines": 85,196   "truncated": false,197   "block": 16,198   "row": 2676199  },200  {201   "path": "scripts/format_Ensembl_ids.R",202   "sha256": "7bf9352cd4819247b4984a58e87034b41dd4acba81134461b7eff369443051ec",203   "language": "R",204   "lines": 14,205   "truncated": false,206   "block": 16,207   "row": 2033208  },209  {210   "path": "scripts/format_unique_fasta_RefSeq_annotation.py",211   "sha256": "684a2f55decc66d34252bb9708e552f4ae83887272e26cff7a2de9b5b62a5d63",212   "language": "Python",213   "lines": 70,214   "truncated": false,215   "block": 15,216   "row": 12508217  },218  {219   "path": "scripts/generate_boxplot_event.py",220   "sha256": "2073b8097f38c7531b4528c1d26018508499e07a6cd9ecfefe5cd7bd9d83f6df",221   "language": "Python",222   "lines": 162,223   "truncated": false,224   "block": 15,225   "row": 17804226  },227  {228   "path": "scripts/split_file.R",229   "sha256": "8e3e8ef49ff7e29546b2c42e09a13b5b65d98c9d1023736034b43723593b441a",230   "language": "R",231   "lines": 52,232   "truncated": false,233   "block": 16,234   "row": 2376235  },236  {237   "path": "significanceCalculator.py",238   "sha256": "308107a7a20288d9eba64d2465676fa71ba05d363a84be86b10eee63d6a96363",239   "language": "Python",240   "lines": 191,241   "truncated": false,242   "block": 15,243   "row": 19691244  },245  {246   "path": "suppa.py",247   "sha256": "9eb78e52ba0f25b5271c12d1126559bf8be343ccdff8d505e85d71b1f430db79",248   "language": "Python",249   "lines": 102,250   "truncated": false,251   "block": 15,252   "row": 15175253  }254 ]255}