OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/benfulcher/genecategoryenrichmentanalysis",4 "url": "https://github.com/benfulcher/GeneCategoryEnrichmentAnalysis",5 "host": "github.com",6 "commit": "b178958942b0ea79ab7ba59f08bf5cb02bf8deeb",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "DataProcessing/ConnectMeDatabase.m",13 "sha256": "fa9cbfd4e0d70e0979a923d41c67583d1cb1a4a925a8a1e81896e945ef5a5e78",14 "language": "MATLAB",15 "lines": 14,16 "truncated": false,17 "block": 19,18 "row": 463819 },20 {21 "path": "DataProcessing/GetGOTerms.m",22 "sha256": "8c33fb9fdaa8e96e8a1ff20eb5fabab4b72a53ff38e049aaa9d9dd78d580c0c9",23 "language": "MATLAB",24 "lines": 53,25 "truncated": false,26 "block": 19,27 "row": 558728 },29 {30 "path": "DataProcessing/ImportMGI_NCBI_Map.m",31 "sha256": "d1c0e37bded059ac0e8570ef95559dbd6a97a8ee6ad12404b4f047e26b095266",32 "language": "MATLAB",33 "lines": 98,34 "truncated": false,35 "block": 19,36 "row": 649037 },38 {39 "path": "DataProcessing/MGI_NCBI_convert.py",40 "sha256": "f446cfade36074d6422ced1c5e5ba6ccc00790d9cb502fe07695d19cc9b16dc1",41 "language": "Python",42 "lines": 42,43 "truncated": false,44 "block": 19,45 "row": 947846 },47 {48 "path": "DataProcessing/MGI_NCBI_downloadall.py",49 "sha256": "66f6e228fab117ee6c7f479ae339164d46a577b235cd27a3de4ccbc66526c4bb",50 "language": "Python",51 "lines": 44,52 "truncated": false,53 "block": 19,54 "row": 962555 },56 {57 "path": "DataProcessing/PropagateUp.m",58 "sha256": "5238875f69b8a9d364b582aaaaaad89dd63985fec1ba047a24e35d2d84338847",59 "language": "MATLAB",60 "lines": 53,61 "truncated": false,62 "block": 19,63 "row": 549664 },65 {66 "path": "DataProcessing/ReadAnnotationFile.m",67 "sha256": "f6e2bc6812eb0647233011a2ef7bf8b65429500fc259c41c725f815cd3a563c1",68 "language": "MATLAB",69 "lines": 53,70 "truncated": false,71 "block": 19,72 "row": 585173 },74 {75 "path": "DataProcessing/ReadDirectAnnotationFile.m",76 "sha256": "0db065227ffede59cd1b8eda8c99666f89dcdeb7ccd0e9b73defe74c0835dccd",77 "language": "MATLAB",78 "lines": 183,79 "truncated": false,80 "block": 19,81 "row": 754382 },83 {84 "path": "DataProcessing/ReadGEMMAAnnotationFile.m",85 "sha256": "4097911fc5c2064426465bdd834cceed19c4a66e7d3b1f0dcb173612e5338889",86 "language": "MATLAB",87 "lines": 79,88 "truncated": false,89 "block": 19,90 "row": 667691 },92 {93 "path": "DataProcessing/UniProtToNCBI.py",94 "sha256": "07c1cfac99da99b48955cc27fcb57a69c5a6f65837af33b83b3ee90e7dc06aeb",95 "language": "Python",96 "lines": 38,97 "truncated": false,98 "block": 19,99 "row": 9409100 },101 {102 "path": "DataProcessing/propagateHierarchy.m",103 "sha256": "c2ed17b975022a48a5fafbf99e93199553e76a69cd840532b2f6628c20496437",104 "language": "MATLAB",105 "lines": 149,106 "truncated": false,107 "block": 19,108 "row": 7434109 },110 {111 "path": "EnsembleEnrichment/ComputeAllCategoryNulls.m",112 "sha256": "ce23b2fdf1d479868959df1338cf2ef2a9c68c100613a5926080aed60740d2f8",113 "language": "MATLAB",114 "lines": 155,115 "truncated": false,116 "block": 19,117 "row": 7327118 },119 {120 "path": "EnsembleEnrichment/EnsembleEnrichment.m",121 "sha256": "c6887d855c4dd4f2d1cc142e05d3cce226b087766b73de269685bfaba4db418b",122 "language": "MATLAB",123 "lines": 75,124 "truncated": false,125 "block": 19,126 "row": 6565127 },128 {129 "path": "GeneScoreResampling/PermuteForNullDistributions.m",130 "sha256": "f13bed9dde44b2713f5aada8cd8e478c8fc9967d87d3be4bd485ad1ee68d608b",131 "language": "MATLAB",132 "lines": 25,133 "truncated": false,134 "block": 19,135 "row": 4989136 },137 {138 "path": "GeneScoreResampling/SingleEnrichment.m",139 "sha256": "f7ed35603ae2bc973666c6a7d199b31bc98500f674b065d861f5f120e6cbecf6",140 "language": "MATLAB",141 "lines": 128,142 "truncated": false,143 "block": 19,144 "row": 7085145 },146 {147 "path": "GetFilteredGOData.m",148 "sha256": "7ec9b4852991b10c6c4213ce2339dfd7a43f13089a75ad39138e3b5da489c585",149 "language": "MATLAB",150 "lines": 95,151 "truncated": false,152 "block": 19,153 "row": 6722154 },155 {156 "path": "LICENSE",157 "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",158 "language": "License",159 "lines": 674,160 "truncated": false,161 "block": 1,162 "row": 2235163 },164 {165 "path": "Peripheral/AggregateScores.m",166 "sha256": "60a21bd783b60a6dc0f2ca92399948ecfb1751a07ba1117393e43b67b884ddb1",167 "language": "MATLAB",168 "lines": 26,169 "truncated": false,170 "block": 19,171 "row": 4916172 },173 {174 "path": "Peripheral/EstimatePVals.m",175 "sha256": "a9c8d53f62809e873a5cdd98534d6547f4270f1c5ab315bb07a8f6f79104e06d",176 "language": "MATLAB",177 "lines": 56,178 "truncated": false,179 "block": 19,180 "row": 6068181 },182 {183 "path": "Peripheral/GiveMeDefaultEnrichmentParams.m",184 "sha256": "1c1b6b7bee8de477b87bcaa369fc1973d9869d12f546957c711286b5abe12783",185 "language": "MATLAB",186 "lines": 55,187 "truncated": false,188 "block": 19,189 "row": 5974190 },191 {192 "path": "Peripheral/GiveMeEntrezID.m",193 "sha256": "0fb719fb2c7e12c0ccd85042185e19fc83695936a89a27bde9c06d8b2f56dfb8",194 "language": "MATLAB",195 "lines": 43,196 "truncated": false,197 "block": 19,198 "row": 5301199 },200 {201 "path": "README.md",202 "sha256": "e4f2d114a43083700e22b213411d2263c50c363eaf15bb491f3002fc3da65ae9",203 "language": "Text",204 "lines": 72,205 "truncated": false,206 "block": 19,207 "row": 16136208 },209 {210 "path": "ResultsComparison/PrepareSummaryTable.m",211 "sha256": "d5f5e6c5078d2e51df8871238d8e5f85adbb1f4d7c2c2552f9897fa9ebfc46d3",212 "language": "MATLAB",213 "lines": 51,214 "truncated": false,215 "block": 19,216 "row": 5642217 },218 {219 "path": "ResultsComparison/ReadInErmineJ.m",220 "sha256": "12c23d4d88f00267af8a54286b09b7aa39fef517a59bd2e1013ccab86234e62b",221 "language": "MATLAB",222 "lines": 95,223 "truncated": false,224 "block": 19,225 "row": 6464226 },227 {228 "path": "ResultsComparison/RunErmineJ.m",229 "sha256": "c60910ef3a3a71889998c5e19886e860381d20b2ef642cec508184958b8ad369",230 "language": "MATLAB",231 "lines": 97,232 "truncated": false,233 "block": 19,234 "row": 6631235 },236 {237 "path": "ResultsComparison/checkConsistency.m",238 "sha256": "136dd312d4a0fe5f82e6d2c57cb94ea142b37519b965a6b3c7f275d93a01806c",239 "language": "MATLAB",240 "lines": 25,241 "truncated": false,242 "block": 19,243 "row": 5020244 },245 {246 "path": "ResultsComparison/writeErmineJFile.m",247 "sha256": "f30394d7590a87637b66ad650e83945acc81fa74c92e822c75dcede7603f20f4",248 "language": "MATLAB",249 "lines": 37,250 "truncated": false,251 "block": 19,252 "row": 5110253 },254 {255 "path": "oboConversion/tsv_to_csv.py",256 "sha256": "58b0259e5746787b6606edb39d24292e135f855febc2d4a442121f01dd97c2c8",257 "language": "Python",258 "lines": 11,259 "truncated": false,260 "block": 19,261 "row": 8862262 },263 {264 "path": "startup.m",265 "sha256": "02d952fb28fa03ab9b6fb5252ff3bf6eb4908ce19450d7854210f12762e2f878",266 "language": "MATLAB",267 "lines": 8,268 "truncated": false,269 "block": 19,270 "row": 4533271 },272 {273 "path": "workflow_lhmirror_finalT.m",274 "sha256": "7e0c3bd901d9e24aad8081c5a591dac169b99eb131228ae086fedd37bb905a3e",275 "language": "MATLAB",276 "lines": 55,277 "truncated": false,278 "block": 19,279 "row": 6104280 }281 ]282}