OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/tierpsy/tierpsy-tracker",4 "url": "https://github.com/Tierpsy/tierpsy-tracker",5 "host": "github.com",6 "commit": "2653ecb3697602e3d6d763c92bc5fb1864c60f15",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "2b78a9abd5d224abd76a3e840f1e8aa17e37379212f5e3ba7b9fd39d617dbb6f",14   "language": "License",15   "lines": 21,16   "truncated": false,17   "block": 11,18   "row": 1421819  },20  {21   "path": "README.md",22   "sha256": "76e22e0030b0fa79fe8937f9f5f9f943c6aeb4517b9acc0179f2056e57901fec",23   "language": "Text",24   "lines": 17,25   "truncated": false,26   "block": 13,27   "row": 625728  },29  {30   "path": "_old/create_binaries/_test/test.sh",31   "sha256": "5c0fa6029fcc77e35f9dc4b475dd2a02ea3e690cf1622f06403105bb12ae3c82",32   "language": "Shell",33   "lines": 12,34   "truncated": false,35   "block": 8,36   "row": 673737  },38  {39   "path": "_old/create_binaries/_test/test_pyinstaller.py",40   "sha256": "1a145d272aad62f7943dc1995f929b17e31759a34d8b87d720f83047045b7f31",41   "language": "Python",42   "lines": 48,43   "truncated": false,44   "block": 6,45   "row": 2522446  },47  {48   "path": "_old/create_binaries/_test/test_pyinstaller_reader.py",49   "sha256": "abccdcbcfefae82fa629e4b031f0a56f997a07bbc34ce031a9b76e6b2286c308",50   "language": "Python",51   "lines": 31,52   "truncated": false,53   "block": 6,54   "row": 2496755  },56  {57   "path": "_old/create_binaries/create_binaries.sh",58   "sha256": "25cf943e168403a2a3399096ea41fb58ff7ec1c7c55cd7891c645fcc82367728",59   "language": "Shell",60   "lines": 38,61   "truncated": false,62   "block": 8,63   "row": 765164  },65  {66   "path": "_old/installation/installation_script.sh",67   "sha256": "36ccba8b94abd8c97f443823932d80828f170b3bc66b3b50f6d6444ee0779968",68   "language": "Shell",69   "lines": 88,70   "truncated": false,71   "block": 8,72   "row": 845373  },74  {75   "path": "_old/installation/installation_test.py",76   "sha256": "0476d51b6c82d0d4d2f94d316c7caf93491f6a94314121b1d3edfd31c9bc599f",77   "language": "Python",78   "lines": 53,79   "truncated": false,80   "block": 6,81   "row": 2724782  },83  {84   "path": "_old/scripts/tierpsy_gui.py",85   "sha256": "717588273e810e3bc6b0e7ce4bc66aaa0120ab9f5fc52638298b22c514898069",86   "language": "Python",87   "lines": 5,88   "truncated": false,89   "block": 6,90   "row": 2074191  },92  {93   "path": "_old/scripts/tierpsy_gui_simple.py",94   "sha256": "0526d5dcf1d512c4724283fcc94713ffe50d9cf75a2c26a876394e948eced273",95   "language": "Python",96   "lines": 6,97   "truncated": false,98   "block": 6,99   "row": 20846100  },101  {102   "path": "_old/scripts/tierpsy_process.py",103   "sha256": "b4d373e650c80e80b6b8816934eb876cdd8590f228089cfa5e8764a3155c7a3a",104   "language": "Python",105   "lines": 10,106   "truncated": false,107   "block": 6,108   "row": 21195109  },110  {111   "path": "_old/scripts/tierpsy_tests.py",112   "sha256": "9558d9ed6bd55a7cf9090354e6670b4538fb750eaa00db109f140109f273c98b",113   "language": "Python",114   "lines": 10,115   "truncated": false,116   "block": 6,117   "row": 21078118  },119  {120   "path": "docker/is_tierpsy_running.sh",121   "sha256": "cee08211ce39bf9b5b06d07a27a8032b24315661c2c5a7f5146c38771496a89b",122   "language": "Shell",123   "lines": 15,124   "truncated": false,125   "block": 8,126   "row": 7010127  },128  {129   "path": "docker/run_tierpsy_docker.sh",130   "sha256": "63593a69ec3a3e083c95c710721c8a62690e4c3b011cffdbab62395672ffdd53",131   "language": "Shell",132   "lines": 89,133   "truncated": false,134   "block": 8,135   "row": 8705136  },137  {138   "path": "recipe/build.sh",139   "sha256": "92cd83c92929c5f73a09caa299b69e55e956da4116ffcba8871f58157356ad26",140   "language": "Shell",141   "lines": 2,142   "truncated": false,143   "block": 8,144   "row": 6514145  },146  {147   "path": "setup.py",148   "sha256": "8f57b33ed9fe431703a949700e53d11b3862ba92e4645301160b69923e5e138d",149   "language": "Python",150   "lines": 77,151   "truncated": false,152   "block": 6,153   "row": 34761154  },155  {156   "path": "tierpsy/__init__.py",157   "sha256": "caab761868698e5ee7d9dd3682cea3e6d21161479886e06cef46c3c24d60bb3c",158   "language": "Python",159   "lines": 63,160   "truncated": false,161   "block": 6,162   "row": 31396163  },164  {165   "path": "tierpsy/analysis/_dev/nn_bgnd/add_bgnd.py",166   "sha256": "5ba0a085684f908f233c4dc39f8c7ce6f6802486d0dcff8134bedfeced59d4dc",167   "language": "Python",168   "lines": 81,169   "truncated": false,170   "block": 6,171   "row": 33435172  },173  {174   "path": "tierpsy/analysis/_dev/nn_bgnd/unet.py",175   "sha256": "84201d82445f2d9e377da0d008981925deb5ed80c62627346f90e90fe033c626",176   "language": "Python",177   "lines": 144,178   "truncated": false,179   "block": 6,180   "row": 39272181  },182  {183   "path": "tierpsy/analysis/_dev/nn_poses/extract_poses.py",184   "sha256": "6c6a16af87718bf322817429621fdabbd8cf816e7e2ada3560d1f985730d9bd6",185   "language": "Python",186   "lines": 87,187   "truncated": false,188   "block": 6,189   "row": 33880190  },191  {192   "path": "tierpsy/analysis/_dev/nn_poses/models.py",193   "sha256": "edda661ba6be678a226189409471813d163f59336e86c02550d406794fb85246",194   "language": "Python",195   "lines": 327,196   "truncated": false,197   "block": 7,198   "row": 3703199  },200  {201   "path": "tierpsy/analysis/blob_feats/__init__.py",202   "sha256": "5c5c4bcb0a54f0dff8afb3fcc0c3775b0d26255effb55b77310add0d3fbb613f",203   "language": "Python",204   "lines": 19,205   "truncated": false,206   "block": 6,207   "row": 23405208  },209  {210   "path": "tierpsy/analysis/blob_feats/getBlobsFeats.py",211   "sha256": "0f9ad74859f12606cc3e712c3ea6e7e122efe180a0c6cc9ecf4ba7d042ade07b",212   "language": "Python",213   "lines": 158,214   "truncated": false,215   "block": 6,216   "row": 43384217  },218  {219   "path": "tierpsy/analysis/compress/BackgroundSubtractor.py",220   "sha256": "f2951a930860ecedab26e9d2c52234b3a90e7e6f0e2138f65ed78f93310884a5",221   "language": "Python",222   "lines": 340,223   "truncated": false,224   "block": 7,225   "row": 4128226  },227  {228   "path": "tierpsy/analysis/compress/Readers/ReadVideoFFMPEG.py",229   "sha256": "36a92a40deef44f8e676056dbaca10585fa302d29e401eeb92834123520cdad1",230   "language": "Python",231   "lines": 146,232   "truncated": false,233   "block": 12,234   "row": 13468235  },236  {237   "path": "tierpsy/analysis/compress/Readers/readDatFiles.py",238   "sha256": "8585d82935bbc454fbaaf277b1a59969f4dceb2eae535bcf498beb49c97a745e",239   "language": "Python",240   "lines": 80,241   "truncated": false,242   "block": 6,243   "row": 36656244  },245  {246   "path": "tierpsy/analysis/compress/Readers/readImages.py",247   "sha256": "7218efe77578a513804fb580a78615ce2269b49f607e4c136d7e6e1def044a41",248   "language": "Python",249   "lines": 60,250   "truncated": false,251   "block": 6,252   "row": 31427253  },254  {255   "path": "tierpsy/analysis/compress/Readers/readLoopBio.py",256   "sha256": "90befc2cc53bc50f63c03b691333f09608b4fc8d173eef97ae46da612f7c81a1",257   "language": "Python",258   "lines": 51,259   "truncated": false,260   "block": 6,261   "row": 29323262  },263  {264   "path": "tierpsy/analysis/compress/Readers/readTifStack.py",265   "sha256": "ee2aa01839fbe36334010de0111f86cf18a137838ec98acc975987a0f48034a7",266   "language": "Python",267   "lines": 28,268   "truncated": false,269   "block": 6,270   "row": 23264271  },272  {273   "path": "tierpsy/analysis/compress/Readers/readVideoCapture.py",274   "sha256": "3792523ad40d0ab92f859891187d59cdc6187c35f6e7e5f2ac1cecafccdc65a2",275   "language": "Python",276   "lines": 53,277   "truncated": false,278   "block": 6,279   "row": 29950280  },281  {282   "path": "tierpsy/analysis/compress/Readers/readVideoHDF5.py",283   "sha256": "1969f8751560eb1a76f6314f25edcfceb98fd03473c96e52753d2b3ad4087566",284   "language": "Python",285   "lines": 64,286   "truncated": false,287   "block": 6,288   "row": 30096289  },290  {291   "path": "tierpsy/analysis/compress/__init__.py",292   "sha256": "b643218216a98d0c120ce50d657a5ae3f023f6fc61d4c499d45e022024f7d53b",293   "language": "Python",294   "lines": 72,295   "truncated": false,296   "block": 6,297   "row": 34312298  },299  {300   "path": "tierpsy/analysis/compress/compressVideo.py",301   "sha256": "a34defa40fb240b596592bfc0079f1b21373654a4aed418bc36262ada7228db6",302   "language": "Python",303   "lines": 462,304   "truncated": false,305   "block": 7,306   "row": 7945307  },308  {309   "path": "tierpsy/analysis/compress/extractMetaData.py",310   "sha256": "a3c34cff179a92d8b8ff36138068a021fc8cc8919043a6c78f0baf73bab4f2c9",311   "language": "Python",312   "lines": 237,313   "truncated": false,314   "block": 12,315   "row": 17026316  },317  {318   "path": "tierpsy/analysis/compress/processVideo.py",319   "sha256": "754a420ff483f4c814b9b3a51453c7e3335dcf6819c688f1b833994675569518",320   "language": "Python",321   "lines": 164,322   "truncated": false,323   "block": 6,324   "row": 43280325  },326  {327   "path": "tierpsy/analysis/compress/selectVideoReader.py",328   "sha256": "0799e8911eee68d16d1e72c7244422111d332ab7f7575ce1fdbf23fe2aaa389e",329   "language": "Python",330   "lines": 55,331   "truncated": false,332   "block": 12,333   "row": 7879334  },335  {336   "path": "tierpsy/analysis/compress_add_data/__init__.py",337   "sha256": "5ce02a311f2201a78bd87d6c8b3a25c7c3ed650fd0686fe511a6331c7c6fdb0e",338   "language": "Python",339   "lines": 17,340   "truncated": false,341   "block": 6,342   "row": 23512343  },344  {345   "path": "tierpsy/analysis/compress_add_data/getAdditionalData.py",346   "sha256": "a5fba1aaf7b2319ae4994ae3c405f7088c5ae3f2e070191ac126e3ee039189e0",347   "language": "Python",348   "lines": 254,349   "truncated": false,350   "block": 7,351   "row": 778352  },353  {354   "path": "tierpsy/analysis/contour_orient/__init__.py",355   "sha256": "cfed5f1a3809bb17ce276a5e7fb2bad0ce5819688fa0799c414e28a3e6fe496a",356   "language": "Python",357   "lines": 24,358   "truncated": false,359   "block": 6,360   "row": 26689361  },362  {363   "path": "tierpsy/analysis/contour_orient/correctVentralDorsal.py",364   "sha256": "3bd2be460ebc978b098ffbeb2ca95daf00090f06365d484a81fc0618e1cf4de0",365   "language": "Python",366   "lines": 96,367   "truncated": false,368   "block": 6,369   "row": 38168370  },371  {372   "path": "tierpsy/analysis/feat_create/__init__.py",373   "sha256": "1e8b3d851a74cbef4405f6c77e7e360c369e496d0e57732de70926133e38efc6",374   "language": "Python",375   "lines": 37,376   "truncated": false,377   "block": 6,378   "row": 27659379  },380  {381   "path": "tierpsy/analysis/feat_create/obtainFeatures.py",382   "sha256": "8390b0548f04e91902821ef1ab5475b5542ab759267328ee4a4646003b71bdcc",383   "language": "Python",384   "lines": 422,385   "truncated": false,386   "block": 7,387   "row": 6845388  },389  {390   "path": "tierpsy/analysis/feat_create/obtainFeaturesHelper.py",391   "sha256": "2bc2076825f6d060d2e580713caf996db4298056f0799976ec458fc8070c2ff6",392   "language": "Python",393   "lines": 474,394   "truncated": false,395   "block": 12,396   "row": 20564397  },398  {399   "path": "tierpsy/analysis/feat_init/__init__.py",400   "sha256": "169c7602348ba1d91647081281a3d2642b231b5057afcef9fdb7a3f448de8aed",401   "language": "Python",402   "lines": 23,403   "truncated": false,404   "block": 6,405   "row": 24536406  },407  {408   "path": "tierpsy/analysis/feat_init/smooth_skeletons_table.py",409   "sha256": "a3a31442ded4b3472764b1fc56a2737223aca3da386ef70c49486276d3214607",410   "language": "Python",411   "lines": 357,412   "truncated": false,413   "block": 12,414   "row": 19313415  },416  {417   "path": "tierpsy/analysis/feat_manual_create/__init__.py",418   "sha256": "1d587f21b95d9f14a78f917a9340a1e68c4424941bf7f1bdb5b1e559b8c5946f",419   "language": "Python",420   "lines": 22,421   "truncated": false,422   "block": 6,423   "row": 24101424  },425  {426   "path": "tierpsy/analysis/feat_tierpsy/__init__.py",427   "sha256": "b512ef8ab99a96da7d4d1494f708d75cae55c4e0a270305cc52f301207935c14",428   "language": "Python",429   "lines": 25,430   "truncated": false,431   "block": 6,432   "row": 24732433  },434  {435   "path": "tierpsy/analysis/feat_tierpsy/get_tierpsy_features.py",436   "sha256": "5b8f1bb58a0448aee7641d290db3d36294e652cb22cb2a6ed7394ce586945f1d",437   "language": "Python",438   "lines": 265,439   "truncated": false,440   "block": 7,441   "row": 3258442  },443  {444   "path": "tierpsy/analysis/food_cnt/__init__.py",445   "sha256": "575a04001f9f549f309e196153e1a94eb1e349861d04e95f849968832e490831",446   "language": "Python",447   "lines": 24,448   "truncated": false,449   "block": 6,450   "row": 24553451  },452  {453   "path": "tierpsy/analysis/food_cnt/getFoodContour.py",454   "sha256": "c1af46c67ca08abfd1dc6937db8eada39c86236b6e029f9026dd472cb6460a28",455   "language": "Python",456   "lines": 77,457   "truncated": false,458   "block": 6,459   "row": 34515460  },461  {462   "path": "tierpsy/analysis/food_cnt/getFoodContourMorph.py",463   "sha256": "4f82112dc2d55a9af3fb219737c0ff11262d0a51cd3849354b83686e7ef5d8b6",464   "language": "Python",465   "lines": 337,466   "truncated": false,467   "block": 12,468   "row": 18244469  },470  {471   "path": "tierpsy/analysis/food_cnt/getFoodContourNN.py",472   "sha256": "e233a80ea531126989838f79e85f086d36ceebcc8cb9583359a0dbd4e4391294",473   "language": "Python",474   "lines": 481,475   "truncated": false,476   "block": 12,477   "row": 19612478  },479  {480   "path": "tierpsy/analysis/int_profile/__init__.py",481   "sha256": "31e7c7fcea655b93082efbd7efaf5e4997f0caa42ad00de36900a328e1159308",482   "language": "Python",483   "lines": 35,484   "truncated": false,485   "block": 6,486   "row": 27140487  },488  {489   "path": "tierpsy/analysis/int_profile/getIntensityProfile.py",490   "sha256": "7cf7897aab01e44717c541d5855dbc29056ff511d0a87a0e8a35cd702d30a9db",491   "language": "Python",492   "lines": 320,493   "truncated": false,494   "block": 7,495   "row": 4658496  },497  {498   "path": "tierpsy/analysis/int_ske_orient/__init__.py",499   "sha256": "689963c388e2c3e84ffa728aa119194603ff560ed3a77bc2b2a3427ddd598f2d",500   "language": "Python",501   "lines": 24,502   "truncated": false,503   "block": 6,504   "row": 24558505  },506  {507   "path": "tierpsy/analysis/int_ske_orient/checkFinalOrientation.py",508   "sha256": "5e612e2921272a74e5e8c037fbc2fe185b017017266ccab009cfdd986858ecbe",509   "language": "Python",510   "lines": 279,511   "truncated": false,512   "block": 12,513   "row": 17755514  },515  {516   "path": "tierpsy/analysis/int_ske_orient/correctHeadTailIntensity.py",517   "sha256": "2e9d02cd73cfab278a1b4ae5580bacffadcf612115bad04ce3aaab105b4ddf17",518   "language": "Python",519   "lines": 568,520   "truncated": false,521   "block": 12,522   "row": 20843523  },524  {525   "path": "tierpsy/analysis/nn_bgnd/add_bgnd.py",526   "sha256": "5ba0a085684f908f233c4dc39f8c7ce6f6802486d0dcff8134bedfeced59d4dc",527   "language": "Python",528   "lines": 81,529   "truncated": false,530   "block": 6,531   "row": 33435532  },533  {534   "path": "tierpsy/analysis/nn_bgnd/unet.py",535   "sha256": "84201d82445f2d9e377da0d008981925deb5ed80c62627346f90e90fe033c626",536   "language": "Python",537   "lines": 144,538   "truncated": false,539   "block": 6,540   "row": 39272541  },542  {543   "path": "tierpsy/analysis/ske_create/__init__.py",544   "sha256": "dbee350a44d7616459ab7239ddb26a0277e7be79d6d65590330fac56136899ce",545   "language": "Python",546   "lines": 32,547   "truncated": false,548   "block": 6,549   "row": 25746550  },551  {552   "path": "tierpsy/analysis/ske_create/getSkeletonsTables.py",553   "sha256": "8b73e32e6402dddac7aad37dea53f3b9730f34bc7d55ab36c54f061705c58c1e",554   "language": "Python",555   "lines": 398,556   "truncated": false,557   "block": 7,558   "row": 6967559  },560  {561   "path": "tierpsy/analysis/ske_create/helperIterROI.py",562   "sha256": "903dafc89830cf700c80d2580216a4bb6c042dddf9128da6d49b83f0119ffbe2",563   "language": "Python",564   "lines": 161,565   "truncated": false,566   "block": 12,567   "row": 14271568  },569  {570   "path": "tierpsy/analysis/ske_create/segWormPython/cleanWorm.py",571   "sha256": "4db9360cc272590b7ad98f8fba410d9b5cf9fdc6c630944f39f7cd4318526930",572   "language": "Python",573   "lines": 553,574   "truncated": false,575   "block": 7,576   "row": 9376577  },578  {579   "path": "tierpsy/analysis/ske_create/segWormPython/cython_files/_old/setup.py",580   "sha256": "c78cef3414b8b644b98d10232fcfd110cde2418ec2cbc074450f1fc46408a91a",581   "language": "Python",582   "lines": 31,583   "truncated": false,584   "block": 6,585   "row": 24706586  },587  {588   "path": "tierpsy/analysis/ske_create/segWormPython/cython_files/c_circCurvature.c",589   "sha256": "e84830fd4b64be76076bd50fd96eebc3bbf0840f63e4aaf482728c420ba158f8",590   "language": "C",591   "lines": 225,592   "truncated": false,593   "block": 5,594   "row": 463595  },596  {597   "path": "tierpsy/analysis/ske_create/segWormPython/cython_files/c_curvspace.c",598   "sha256": "c5206eb8958e4dcce73fda577a8ecaac5f72282a38da7ca23a6bb444be7f70e6",599   "language": "C",600   "lines": 151,601   "truncated": false,602   "block": 5,603   "row": 256604  },605  {606   "path": "tierpsy/analysis/ske_create/segWormPython/getHeadTail.py",607   "sha256": "95ce399b9e647330f0353debd11bbfc2cd4690e773c398f9d4b9f7217656fd28",608   "language": "Python",609   "lines": 159,610   "truncated": false,611   "block": 6,612   "row": 43072613  },614  {615   "path": "tierpsy/analysis/ske_create/segWormPython/linearSkeleton.py",616   "sha256": "186b4f99af53bb5fb7c60e251fbc6de1a39145ee1b294183d6e32c49f8c66257",617   "language": "Python",618   "lines": 430,619   "truncated": false,620   "block": 12,621   "row": 20192622  },623  {624   "path": "tierpsy/analysis/ske_create/segWormPython/mainSegworm.py",625   "sha256": "e540f67ce1955ae7f41242543c49fee7a3a199394d3281b8b31601cc1ec993ae",626   "language": "Python",627   "lines": 324,628   "truncated": false,629   "block": 7,630   "row": 5471631  },632  {633   "path": "tierpsy/analysis/ske_create/zebrafishAnalysis/zebrafishAnalysis.py",634   "sha256": "0b36ce2fa8ba6e18c58aade4364f73312f5e4188cc903ebd8c8a24074e354800",635   "language": "Python",636   "lines": 529,637   "truncated": false,638   "block": 7,639   "row": 7733640  },641  {642   "path": "tierpsy/analysis/ske_create/zebrafishAnalysis/zebrafishSkeleton.py",643   "sha256": "a5621264f2c1de76256c38f4f188d4592bde112560455b5ae9a9e8d6525afb58",644   "language": "Python",645   "lines": 209,646   "truncated": false,647   "block": 6,648   "row": 42611649  },650  {651   "path": "tierpsy/analysis/ske_filt/__init__.py",652   "sha256": "c143e0b9b1640a883755fa4a2e31660b48de44a14bb7d7d220c08ecba8be67f1",653   "language": "Python",654   "lines": 23,655   "truncated": false,656   "block": 6,657   "row": 23680658  },659  {660   "path": "tierpsy/analysis/ske_filt/getFilteredSkels.py",661   "sha256": "09d2978431b20d883de2cb7d72d52304ed58c21a7bbd83a901ab4cfb2cd1356d",662   "language": "Python",663   "lines": 504,664   "truncated": false,665   "block": 12,666   "row": 20799667  },668  {669   "path": "tierpsy/analysis/ske_init/__init__.py",670   "sha256": "d7cc5318cce3225a3c0e7ab95f1bcdd211cd3b32c6a735b7a053d9fb594356cd",671   "language": "Python",672   "lines": 32,673   "truncated": false,674   "block": 6,675   "row": 25507676  },677  {678   "path": "tierpsy/analysis/ske_init/filterTrajectModel.py",679   "sha256": "57b08b211d13b2d0e508b5d8321425c014842252459e2fcab2e9a0292d3776ab",680   "language": "Python",681   "lines": 149,682   "truncated": false,683   "block": 6,684   "row": 42476685  },686  {687   "path": "tierpsy/analysis/ske_init/processTrajectoryData.py",688   "sha256": "d28e0974ebd0c74ccf717c031ac5c50d0f6131b6cf53a634d1048d8d3ec466d6",689   "language": "Python",690   "lines": 315,691   "truncated": false,692   "block": 12,693   "row": 18583694  },695  {696   "path": "tierpsy/analysis/ske_init/pytorchModelHelper.py",697   "sha256": "dae5991db5f1b548601c459fe4d29aed1f21af90e32e192309595a809c738244",698   "language": "Python",699   "lines": 168,700   "truncated": false,701   "block": 6,702   "row": 43185703  },704  {705   "path": "tierpsy/analysis/ske_orient/WormClass.py",706   "sha256": "d1544f535853d4896630b2e2d338da00d1cd701555126be718d0b78f5dace2af",707   "language": "Python",708   "lines": 167,709   "truncated": false,710   "block": 6,711   "row": 44190712  },713  {714   "path": "tierpsy/analysis/ske_orient/__init__.py",715   "sha256": "c2609107df072065dfb4a60326ab13ff31e219a3acbef3762c3b7f3ce3a86b54",716   "language": "Python",717   "lines": 22,718   "truncated": false,719   "block": 6,720   "row": 23513721  },722  {723   "path": "tierpsy/analysis/ske_orient/checkHeadOrientation.py",724   "sha256": "cdaca23fbfba3c84e7dca6c8f36633a9750a8848987528a278c15961be1e41ec",725   "language": "Python",726   "lines": 213,727   "truncated": false,728   "block": 12,729   "row": 17046730  },731  {732   "path": "tierpsy/analysis/ske_pharynx/__init__.py",733   "sha256": "ed9939a3f6f8c65a18e1cfd4114996ba3e7fee164cd290f7117180880074745c",734   "language": "Python",735   "lines": 10,736   "truncated": false,737   "block": 6,738   "row": 22001739  },740  {741   "path": "tierpsy/analysis/ske_pharynx/orient_pharynx.py",742   "sha256": "9d3d7e67b79639f12acb9d8180ab90abdf8559b2b8d82088cbdc4031bc8b2464",743   "language": "Python",744   "lines": 163,745   "truncated": false,746   "block": 6,747   "row": 42927748  },749  {750   "path": "tierpsy/analysis/ske_pharynx/pharynx_velocity.py",751   "sha256": "39a861a5f9d6bac717ff2cd049acc0b5aee3d0ca236956378d02982b301ca7ba",752   "language": "Python",753   "lines": 66,754   "truncated": false,755   "block": 6,756   "row": 34544757  },758  {759   "path": "tierpsy/analysis/split_fov/FOVMultiWellsSplitter.py",760   "sha256": "2d778abe530d42de2a4cb1492a2d6c0631e7d1c0c7d1656bc47988b00c4e53e1",761   "language": "Python",762   "lines": 1092,763   "truncated": false,764   "block": 13,765   "row": 212766  },767  {768   "path": "tierpsy/analysis/split_fov/helper.py",769   "sha256": "34106949e5f5b94c9867a8ac189b9463dc0348c8041dfdea3211c34b5387d999",770   "language": "Python",771   "lines": 428,772   "truncated": false,773   "block": 7,774   "row": 7016775  },776  {777   "path": "tierpsy/analysis/stage_aligment/__init__.py",778   "sha256": "9c48d593f0762cfc2c86cf960b5544f853a5b3e577d47a22cd313ffaf2947750",779   "language": "Python",780   "lines": 11,781   "truncated": false,782   "block": 6,783   "row": 22541784  },785  {786   "path": "tierpsy/analysis/stage_aligment/alignStageMotion.py",787   "sha256": "a20dfe280186f8e3279b7eb11a6f7e42d1e649c77718fe2a8943e59414b43525",788   "language": "Python",789   "lines": 219,790   "truncated": false,791   "block": 12,792   "row": 17665793  },794  {795   "path": "tierpsy/analysis/stage_aligment/findStageMovement.py",796   "sha256": "f1fe7b548e6dbaf50f6bb2d019082f9f72546f8cae9459a13a9ac0c559d0efcc",797   "language": "Python",798   "lines": 1323,799   "truncated": false,800   "block": 13,801   "row": 391802  },803  {804   "path": "tierpsy/analysis/traj_create/__init__.py",805   "sha256": "7f51145a39cae64b95d1dff50a33d71b8e3c85086702055cfe647e6fb3b91a47",806   "language": "Python",807   "lines": 33,808   "truncated": false,809   "block": 6,810   "row": 27073811  },812  {813   "path": "tierpsy/analysis/traj_create/getBlobTrajectories.py",814   "sha256": "fc64f4edb16bbae1751706de06ec255167eee972827a192d2be670fdfa1a6c93",815   "language": "Python",816   "lines": 483,817   "truncated": false,818   "block": 12,819   "row": 20414820  },821  {822   "path": "tierpsy/analysis/traj_join/__init__.py",823   "sha256": "0b70aade025bccf16b5a89dc614bcd2337d4383028236f95fa69680482ef960c",824   "language": "Python",825   "lines": 23,826   "truncated": false,827   "block": 6,828   "row": 23890829  },830  {831   "path": "tierpsy/analysis/traj_join/joinBlobsTrajectories.py",832   "sha256": "112a11acf672d7703017f298fa86c1f4235bd26ca7be1950a1fc95fd14daa4e0",833   "language": "Python",834   "lines": 416,835   "truncated": false,836   "block": 12,837   "row": 20173838  },839  {840   "path": "tierpsy/analysis/vid_subsample/__init__.py",841   "sha256": "9a99a587e6b4d7646744c5ec36bc8848730096a7a9bae2f7856fd316cc81e6a6",842   "language": "Python",843   "lines": 21,844   "truncated": false,845   "block": 6,846   "row": 23339847  },848  {849   "path": "tierpsy/analysis/vid_subsample/createSampleVideo.py",850   "sha256": "483190083196069cb878f1719434ed85ba2ef2267a762d9751b29fbdfd87812c",851   "language": "Python",852   "lines": 143,853   "truncated": false,854   "block": 6,855   "row": 41977856  },857  {858   "path": "tierpsy/analysis/wcon_export/__init__.py",859   "sha256": "d469cd65b556d67b67d3da3694aa9086fe9a7702f2cc217715d91b163257bd9c",860   "language": "Python",861   "lines": 25,862   "truncated": false,863   "block": 6,864   "row": 23722865  },866  {867   "path": "tierpsy/analysis/wcon_export/exportWCON.py",868   "sha256": "61cdbaea256d909cfc14d65e6d024fbef0d223f4c54c010401f9ff5687422be1",869   "language": "Python",870   "lines": 286,871   "truncated": false,872   "block": 7,873   "row": 2915874  },875  {876   "path": "tierpsy/debugging/add_default_attrs.py",877   "sha256": "5c4fe4a838366eb04b95eb3b55e17cf71a39a9ff23617ad3e63100376e369c9b",878   "language": "Python",879   "lines": 50,880   "truncated": false,881   "block": 6,882   "row": 30130883  },884  {885   "path": "tierpsy/debugging/catch_infinite_loop.py",886   "sha256": "7f4a143ac324f3c5bd1c819ea91c1d568c5bd89909a900e73d4a332dc82eeed8",887   "language": "Python",888   "lines": 42,889   "truncated": false,890   "block": 6,891   "row": 25047892  },893  {894   "path": "tierpsy/debugging/check4corrupt_frames.py",895   "sha256": "d545b63562549e855f636eaa3c64dcf97a1e6d0a51e17a1cd5f42ebe0e9db024",896   "language": "Python",897   "lines": 87,898   "truncated": false,899   "block": 6,900   "row": 35975901  },902  {903   "path": "tierpsy/debugging/check_default_attrs.py",904   "sha256": "ab59c2459283a35442d29d06102f3c73ea853c4f31268bce1ccde3d9a9e7166c",905   "language": "Python",906   "lines": 111,907   "truncated": false,908   "block": 6,909   "row": 36940910  },911  {912   "path": "tierpsy/debugging/check_flow.py",913   "sha256": "6e13563d02b6d558befb8b4ac8331cbbf9eab4ec992765e2303f598512f506aa",914   "language": "Python",915   "lines": 53,916   "truncated": false,917   "block": 6,918   "row": 27654919  },920  {921   "path": "tierpsy/debugging/check_roi_flow.py",922   "sha256": "8d4c66e41cff04a5b70201849ec5cfd1d607dc7a45e42381ec8fb637aa0054f9",923   "language": "Python",924   "lines": 44,925   "truncated": false,926   "block": 6,927   "row": 27415928  },929  {930   "path": "tierpsy/debugging/export2images.py",931   "sha256": "843a787aa8825ccb9abd3422995fdcc8788bce915eb615c03e213e8a48882baf",932   "language": "Python",933   "lines": 19,934   "truncated": false,935   "block": 6,936   "row": 22121937  },938  {939   "path": "tierpsy/debugging/test_fovsplitting.py",940   "sha256": "0d9a675eda5e5dfd799bcf21b4f9a0643be20dc10fd061d7dcb9b711883cc96b",941   "language": "Python",942   "lines": 115,943   "truncated": false,944   "block": 6,945   "row": 36722946  },947  {948   "path": "tierpsy/debugging/test_pipeline.py",949   "sha256": "cd3012d595c7c6d5ed16f9b89895c6c8cab8ef00763ff65af6a3b5127585e06c",950   "language": "Python",951   "lines": 155,952   "truncated": false,953   "block": 7,954   "row": 1165955  },956  {957   "path": "tierpsy/features/open_worm_analysis_toolbox/__init__.py",958   "sha256": "8809fca3733cba55ac30586e7578d04449960778fe0a8280db57c7bfcefd8bfc",959   "language": "Python",960   "lines": 49,961   "truncated": false,962   "block": 6,963   "row": 29199964  },965  {966   "path": "tierpsy/features/open_worm_analysis_toolbox/config.py",967   "sha256": "6a2290b9d74b79181fb30b8351dfd970b3eff55f2b2c75c57cc452ee0491182b",968   "language": "Python",969   "lines": 48,970   "truncated": false,971   "block": 6,972   "row": 28416973  },974  {975   "path": "tierpsy/features/open_worm_analysis_toolbox/features/events.py",976   "sha256": "dcab1b701cd586a0bcf67fb5f2d59e07fa83353c69a2917d40a07c186f67aab9",977   "language": "Python",978   "lines": 1096,979   "truncated": false,980   "block": 7,981   "row": 11612982  },983  {984   "path": "tierpsy/features/open_worm_analysis_toolbox/features/feature_manipulations.py",985   "sha256": "8ba45f726c067a0a19897f6b5e04627b1cd6153eceb3350b204622d6f821bdcf",986   "language": "Python",987   "lines": 240,988   "truncated": false,989   "block": 6,990   "row": 45140991  },992  {993   "path": "tierpsy/features/open_worm_analysis_toolbox/features/feature_processing_options.py",994   "sha256": "43e6ca75d6b1cec00da50b3e49ed56340dd217ba269277b9cecffb02bb918d29",995   "language": "Python",996   "lines": 305,997   "truncated": false,998   "block": 7,999   "row": 23991000  },1001  {1002   "path": "tierpsy/features/open_worm_analysis_toolbox/features/generic_features.py",1003   "sha256": "97691bfbbdafba12769b77a2776ee82be4fa21caffe7db157014070526c0ca43",1004   "language": "Python",1005   "lines": 415,1006   "truncated": false,1007   "block": 7,1008   "row": 58201009  },1010  {1011   "path": "tierpsy/features/open_worm_analysis_toolbox/features/locomotion_bends.py",1012   "sha256": "803a8e7acf3b7c22f32c644a2dfc7d376a5e0f31610968755cc1e79b72c95079",1013   "language": "Python",1014   "lines": 1731,1015   "truncated": false,1016   "block": 8,1017   "row": 6001018  },1019  {1020   "path": "tierpsy/features/open_worm_analysis_toolbox/features/locomotion_features.py",1021   "sha256": "334a66de7fa1d5c374864e28e28406ce27629aaaa79bf938f15cd4510d91bc23",1022   "language": "Python",1023   "lines": 490,1024   "truncated": false,1025   "block": 7,1026   "row": 64661027  },1028  {1029   "path": "tierpsy/features/open_worm_analysis_toolbox/features/locomotion_turns.py",1030   "sha256": "e229803c49cd840c058266476f0398f1548f7031292812e2482e7c537eff2695",1031   "language": "Python",1032   "lines": 1364,1033   "truncated": false,1034   "block": 8,1035   "row": 1251036  },1037  {1038   "path": "tierpsy/features/open_worm_analysis_toolbox/features/morphology_features.py",1039   "sha256": "4384b9443f0fd6a89f4b0f69497e4c66345f4ad234489353a35bd9a1bfecbfeb",1040   "language": "Python",1041   "lines": 167,1042   "truncated": false,1043   "block": 6,1044   "row": 401641045  },1046  {1047   "path": "tierpsy/features/open_worm_analysis_toolbox/features/path_features.py",1048   "sha256": "0a98d12a06680f4bfd6eb269437972ea2f9e0e27e21719e2e39818cec5a361b3",1049   "language": "Python",1050   "lines": 552,1051   "truncated": false,1052   "block": 7,1053   "row": 75821054  },1055  {1056   "path": "tierpsy/features/open_worm_analysis_toolbox/features/posture_features.py",1057   "sha256": "7606bb7ba76b55a4ca56295fc15f708a6c47d978a394f279f97e55adcb9ca2d0",1058   "language": "Python",1059   "lines": 1379,1060   "truncated": false,1061   "block": 8,1062   "row": 131063  },1064  {1065   "path": "tierpsy/features/open_worm_analysis_toolbox/features/velocity.py",1066   "sha256": "05411935a443013266245e1079159fc8a0395123ababbe62e74a53f97ad2cc81",1067   "language": "Python",1068   "lines": 559,1069   "truncated": false,1070   "block": 7,1071   "row": 87381072  },1073  {1074   "path": "tierpsy/features/open_worm_analysis_toolbox/features/worm_features.py",1075   "sha256": "0ee8f6c7ccd52548ec2300196058bc2bffcf0c27bf0ed3375e5d095ebe1b5bf4",1076   "language": "Python",1077   "lines": 1259,1078   "truncated": false,1079   "block": 7,1080   "row": 116821081  },1082  {1083   "path": "tierpsy/features/open_worm_analysis_toolbox/prefeatures/basic_worm.py",1084   "sha256": "4cc4306dd3c1798a58d731acdb7bbeb004fb3181250e45e154237f0c590c4efa",1085   "language": "Python",1086   "lines": 717,1087   "truncated": false,1088   "block": 7,1089   "row": 96411090  },1091  {1092   "path": "tierpsy/features/open_worm_analysis_toolbox/prefeatures/normalized_worm.py",1093   "sha256": "6f0fe33652c36b3fbb800b6e8cdd003e8b1863fa6f46892f4e0158d3f5af46fb",1094   "language": "Python",1095   "lines": 789,1096   "truncated": false,1097   "block": 7,1098   "row": 104471099  },1100  {1101   "path": "tierpsy/features/open_worm_analysis_toolbox/prefeatures/pre_features.py",1102   "sha256": "20536cddceb10832f7d7aedb98852b051c006a4851cfc710d020fdaba0a922e2",1103   "language": "Python",1104   "lines": 310,1105   "truncated": false,1106   "block": 7,1107   "row": 49361108  },1109  {1110   "path": "tierpsy/features/open_worm_analysis_toolbox/prefeatures/pre_features_helpers.py",1111   "sha256": "940575c2f038c0b97b1cfd747e8f379ad3a6be43265349799d10c884948e537b",1112   "language": "Python",1113   "lines": 245,1114   "truncated": false,1115   "block": 7,1116   "row": 22551117  },1118  {1119   "path": "tierpsy/features/open_worm_analysis_toolbox/prefeatures/skeleton_calculator1.py",1120   "sha256": "0726eb031fe76ad620b95a2b265801082028df3d31551531b88c31a86815348d",1121   "language": "Python",1122   "lines": 769,1123   "truncated": false,1124   "block": 12,1125   "row": 220631126  },1127  {1128   "path": "tierpsy/features/open_worm_analysis_toolbox/prefeatures/video_info.py",1129   "sha256": "6a1419d85cf0a051e1309351566c7ad2e97fd6e5af61f1b28f1026cd0e58d2e5",1130   "language": "Python",1131   "lines": 217,1132   "truncated": false,1133   "block": 6,1134   "row": 446541135  },1136  {1137   "path": "tierpsy/features/open_worm_analysis_toolbox/user_config.py",1138   "sha256": "96f49f6480b5c7a304dd3e66aad6648d16dfe922edefbef68d1a8be96078cb17",1139   "language": "Python",1140   "lines": 18,1141   "truncated": false,1142   "block": 6,1143   "row": 232381144  },1145  {1146   "path": "tierpsy/features/open_worm_analysis_toolbox/utils.py",1147   "sha256": "06eec7c7211af5f19b05a93cdbcea329469619d2c50dda031b15c32b922f0571",1148   "language": "Python",1149   "lines": 1197,1150   "truncated": false,1151   "block": 12,1152   "row": 224051153  },1154  {1155   "path": "tierpsy/features/open_worm_analysis_toolbox/version.py",1156   "sha256": "bd0727fdfd9dafa73d7f63a4e5b70fe179b155dee084c6f7d84bec12041ebf57",1157   "language": "Python",1158   "lines": 5,1159   "truncated": false,1160   "block": 6,1161   "row": 205241162  },1163  {1164   "path": "tierpsy/features/tierpsy_features/__init__.py",1165   "sha256": "b551a55f13c256e8f41a9084879d068fff674c3990abfefff932b97b1235d8f1",1166   "language": "Python",1167   "lines": 9,1168   "truncated": false,1169   "block": 6,1170   "row": 213921171  },1172  {1173   "path": "tierpsy/features/tierpsy_features/curvatures.py",1174   "sha256": "a8e230fdf24e1173d1056de9f53a290fe571f0537f8466354c9c99651e1dbe5d",1175   "language": "Python",1176   "lines": 297,1177   "truncated": false,1178   "block": 7,1179   "row": 22501180  },1181  {1182   "path": "tierpsy/features/tierpsy_features/events.py",1183   "sha256": "ed58f55d311de55b9199062c79d0ec9e0377c9d1b11064c5b484d2ede71b67ec",1184   "language": "Python",1185   "lines": 417,1186   "truncated": false,1187   "block": 12,1188   "row": 195651189  },1190  {1191   "path": "tierpsy/features/tierpsy_features/features.py",1192   "sha256": "3d580b3e5d55e3e289ebbe8712e84a7c5b811e7e871b153c1414ccefeb5059ab",1193   "language": "Python",1194   "lines": 130,1195   "truncated": false,1196   "block": 6,1197   "row": 410041198  },1199  {1200   "path": "tierpsy/features/tierpsy_features/food.py",

Showing the first 1,200 of 1731 lines. Download the file for the rest.