OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/rouxlaboratory/casali_2026",4 "url": "https://github.com/RouxLaboratory/Casali_2026.git",5 "host": "github.com",6 "commit": "392515da63612a95ebd7091e390e2c90f459c999",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": ".ipynb_checkpoints/RespirationBasedStatePrediction-checkpoint.ipynb",13   "sha256": "935b025e6f24d481b045ef9d04f776e86ec2c7e0ce8a14f087a6373b92d44e93",14   "language": "Jupyter",15   "lines": 332,16   "truncated": false,17   "block": 6,18   "row": 25919  },20  {21   "path": "LICENSE",22   "sha256": "d47960622187038c2173ced99508fdbaee9807b1e89f3e7f5ffe204aab1c888b",23   "language": "License",24   "lines": 21,25   "truncated": false,26   "block": 6,27   "row": 148228  },29  {30   "path": "MouseBreathMetricsMaster/breathmetrics-master/bmGUI_demo.m",31   "sha256": "330c46459f87fd8d5c5e246475ba9acec835ab67609d5e84e4e1ed8abadaadbc",32   "language": "MATLAB",33   "lines": 242,34   "truncated": false,35   "block": 6,36   "row": 1729237  },38  {39   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics.m",40   "sha256": "a09a7fccc3970ea62c436c7619ffcfb24c0ac4ada8e8ca788155cb8f8cbcf501",41   "language": "MATLAB",42   "lines": 1036,43   "truncated": false,44   "block": 6,45   "row": 1925146  },47  {48   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/bmGui.m",49   "sha256": "498d0070fdd248538997c9273deb152b90d043c9b7c52709d8886124ea3a40d8",50   "language": "MATLAB",51   "lines": 1227,52   "truncated": false,53   "block": 6,54   "row": 1909655  },56  {57   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/bmObjFunctionsChanged/findRespiratoryPausesAndOnsets_original.m",58   "sha256": "305b940eac544408f236415d998d777399aa9333c0876c927ecf5f1f9ca43e79",59   "language": "MATLAB",60   "lines": 227,61   "truncated": false,62   "block": 6,63   "row": 1723164  },65  {66   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/createRespiratoryERPMatrix.m",67   "sha256": "e94c9ce7ed6d337193a03ddaf1ab21413209f6b2caf2ba6e90f7046516dcefb2",68   "language": "MATLAB",69   "lines": 91,70   "truncated": false,71   "block": 6,72   "row": 1317073  },74  {75   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/fftSmooth.m",76   "sha256": "68eacbfe3f2abfe3416590a02f9362cc8aa3d0045dceb56d45704e56b4457a9e",77   "language": "MATLAB",78   "lines": 18,79   "truncated": false,80   "block": 6,81   "row": 435182  },83  {84   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/findBreathDurations.m",85   "sha256": "06a18dad481a420cd61dad9f67cf9054d2a44e42832d1580a4a1d53a89ed5a27",86   "language": "MATLAB",87   "lines": 55,88   "truncated": false,89   "block": 6,90   "row": 915391  },92  {93   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/findRespiratoryExtrema.m",94   "sha256": "f5351121c5a536bdf391b8c6c3ca60dc3a6110ecfc2137feb05c116f13c2b7b3",95   "language": "MATLAB",96   "lines": 207,97   "truncated": false,98   "block": 6,99   "row": 16347100  },101  {102   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/findRespiratoryOffsets.m",103   "sha256": "1c21ccce5d8fbace29e0f4ec94fb1080f2afc076b1571b00fcb91f2d7ab89a3e",104   "language": "MATLAB",105   "lines": 42,106   "truncated": false,107   "block": 6,108   "row": 8188109  },110  {111   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/findRespiratoryPausesAndOnsets.m",112   "sha256": "e3029aab2fffbdfe2ca2f620db5c20c20aed6609a7a23e15a99f2f72c3002fc6",113   "language": "MATLAB",114   "lines": 280,115   "truncated": false,116   "block": 6,117   "row": 18021118  },119  {120   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/findRespiratoryVolumes.m",121   "sha256": "d491efd6a5729a9d8241c4bedaaa4552eca49f9f74d4092ced3d8e43d31d92d7",122   "language": "MATLAB",123   "lines": 43,124   "truncated": false,125   "block": 6,126   "row": 8207127  },128  {129   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/getSecondaryRespiratoryFeatures.m",130   "sha256": "4762f6b3c94aedb9be963221ba027770e6736a10526661b5b4b3fe2d72fdcd5a",131   "language": "MATLAB",132   "lines": 252,133   "truncated": false,134   "block": 6,135   "row": 16801136  },137  {138   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/plotBreathCompositions.m",139   "sha256": "db57248a35fc413d101512a01dedcbead6033f5b75797890c1bf6498bb82ca53",140   "language": "MATLAB",141   "lines": 286,142   "truncated": false,143   "block": 6,144   "row": 17665145  },146  {147   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/plotRespiratoryERP.m",148   "sha256": "2f16702deee8ad2f2451ffd589fa9b3714c89660d03cd4588288be2bcca2b0fb",149   "language": "MATLAB",150   "lines": 29,151   "truncated": false,152   "block": 6,153   "row": 6070154  },155  {156   "path": "MouseBreathMetricsMaster/breathmetrics-master/breathmetrics_functions/plotRespiratoryFeatures.m",157   "sha256": "776a7732a34d5bfd3469ed38a53da3ca7d5f85561e87bb21481f34b2dd68ec3a",158   "language": "MATLAB",159   "lines": 256,160   "truncated": false,161   "block": 6,162   "row": 17080163  },164  {165   "path": "MouseBreathMetricsMaster/breathmetrics-master/demo.m",166   "sha256": "84e906688f0251dfe794937547011a25e36b2db0257763e236d2b1f3b1c4958a",167   "language": "MATLAB",168   "lines": 547,169   "truncated": false,170   "block": 6,171   "row": 18780172  },173  {174   "path": "MouseBreathMetricsMaster/breathmetrics-master/simulateRespiratoryData.m",175   "sha256": "84379ac4895284d6b1f7043fd15199767f27c2950e570be3afdf84c4ff45256c",176   "language": "MATLAB",177   "lines": 289,178   "truncated": false,179   "block": 6,180   "row": 17210181  },182  {183   "path": "MouseBreathMetricsMaster/helpers/CalibrateRawPressureSignal.m",184   "sha256": "fbf98a060421f599a7316008ea7d97e01822430f44fb53506e75d4dbbc4a3064",185   "language": "MATLAB",186   "lines": 47,187   "truncated": false,188   "block": 6,189   "row": 11482190  },191  {192   "path": "MouseBreathMetricsMaster/helpers/CircShiftAlongEachColumn.m",193   "sha256": "17a8a3aaab26d57d5476ec40e26b0a957a3a5d094af87f360f82500ddf7e5f6f",194   "language": "MATLAB",195   "lines": 13,196   "truncated": false,197   "block": 6,198   "row": 3092199  },200  {201   "path": "MouseBreathMetricsMaster/helpers/ConcatentateIntoStructureIndices.m",202   "sha256": "c9861e88ccb728b123a52aad4a7f97a789d07a088e3efcd5fb889147c90a21ac",203   "language": "MATLAB",204   "lines": 373,205   "truncated": false,206   "block": 6,207   "row": 18230208  },209  {210   "path": "MouseBreathMetricsMaster/helpers/CorrectAccOffset.m",211   "sha256": "1a186dc84956903cc594d4f5529d66b110ff63c04841633a4082524def43ee1b",212   "language": "MATLAB",213   "lines": 17,214   "truncated": false,215   "block": 6,216   "row": 3736217  },218  {219   "path": "MouseBreathMetricsMaster/helpers/DetectMarginsFromArray.m",220   "sha256": "95330f5d893ea29c017ef8a2577100852eccb0c67501bd578887c934771ff28e",221   "language": "MATLAB",222   "lines": 71,223   "truncated": false,224   "block": 6,225   "row": 8069226  },227  {228   "path": "MouseBreathMetricsMaster/helpers/EqualBinning.m",229   "sha256": "9f13d673511e7ee9c68aef4d28745bff88a66107665742a969a78188e98ca80d",230   "language": "MATLAB",231   "lines": 19,232   "truncated": false,233   "block": 6,234   "row": 4053235  },236  {237   "path": "MouseBreathMetricsMaster/helpers/FindCommonIntervals.m",238   "sha256": "eaa3fa63cafab50fdbccaf106ed2372209816517fbd8c559d04f78f4d3bf4a94",239   "language": "MATLAB",240   "lines": 21,241   "truncated": false,242   "block": 6,243   "row": 4524244  },245  {246   "path": "MouseBreathMetricsMaster/helpers/FindConsecutiveData.m",247   "sha256": "4451a864d5b02e23c7b599d4092262c5db07e8a63995f0379332369b7dc19343",248   "language": "MATLAB",249   "lines": 29,250   "truncated": false,251   "block": 6,252   "row": 3017253  },254  {255   "path": "MouseBreathMetricsMaster/helpers/FindExtremesOfArray.m",256   "sha256": "fddf75fbf629b246c3688e8e48514808208fedf266c3e5fa04f9cacc642cddb9",257   "language": "MATLAB",258   "lines": 8,259   "truncated": false,260   "block": 6,261   "row": 2351262  },263  {264   "path": "MouseBreathMetricsMaster/helpers/FindPausesFromBmChunk_FromMaxima.m",265   "sha256": "5da09385ae1cd5d4f2165da5e7c30ab3656df05c02f5946b0bca97b9cd65b5cf",266   "language": "MATLAB",267   "lines": 874,268   "truncated": false,269   "block": 6,270   "row": 19362271  },272  {273   "path": "MouseBreathMetricsMaster/helpers/FixbmObjects.m",274   "sha256": "a2d9257fcbde932d2c3847783fe6a00d5759f4018abb640bafd94c1de851493d",275   "language": "MATLAB",276   "lines": 619,277   "truncated": false,278   "block": 6,279   "row": 19260280  },281  {282   "path": "MouseBreathMetricsMaster/helpers/GetThisRowFromMatrix.m",283   "sha256": "e32384e543c39a73d5cc03210c66fa1f386e4a42ab7d663d642cbc5d7e7c910e",284   "language": "MATLAB",285   "lines": 5,286   "truncated": false,287   "block": 6,288   "row": 2222289  },290  {291   "path": "MouseBreathMetricsMaster/helpers/GetValueFromIndex.m",292   "sha256": "75c74df0f12bd920fcba1e61934fb7b58b1c6a79953fd836d34e331d5e9f8a7b",293   "language": "MATLAB",294   "lines": 20,295   "truncated": false,296   "block": 6,297   "row": 4041298  },299  {300   "path": "MouseBreathMetricsMaster/helpers/Interpolate2DMap.m",301   "sha256": "8b4e0d2f3aaa32fba62b2e30d31871ffd21c5f8a3b2b532029f38c72cab93561",302   "language": "MATLAB",303   "lines": 27,304   "truncated": false,305   "block": 6,306   "row": 5675307  },308  {309   "path": "MouseBreathMetricsMaster/helpers/InterpolateVector.m",310   "sha256": "fcc6b96e7789f1871842b2c6709c54add039af2307d4d60f170c2564a49b5e94",311   "language": "MATLAB",312   "lines": 59,313   "truncated": false,314   "block": 6,315   "row": 10606316  },317  {318   "path": "MouseBreathMetricsMaster/helpers/MakeFiguresForHippMeeting.m",319   "sha256": "4bb6778fddf61d864f140a078cea8c6643bbe3ef3230a194d00957e1ae928277",320   "language": "MATLAB",321   "lines": 119,322   "truncated": false,323   "block": 6,324   "row": 14863325  },326  {327   "path": "MouseBreathMetricsMaster/helpers/MouseBreathMetricsWrapper.m",328   "sha256": "9f5f0eb0648b0d6e5630d194311bcb628ccdadae066bdbc399e18fd635905258",329   "language": "MATLAB",330   "lines": 102,331   "truncated": false,332   "block": 6,333   "row": 15182334  },335  {336   "path": "MouseBreathMetricsMaster/helpers/NElements.m",337   "sha256": "8b64e8997f7d4635215c9c9c72cd71d0841ed9a7c8f80db47fcdbaa5b7a52ffc",338   "language": "MATLAB",339   "lines": 7,340   "truncated": false,341   "block": 6,342   "row": 2360343  },344  {345   "path": "MouseBreathMetricsMaster/helpers/PrepareBmObjForCnnPrediction.m",346   "sha256": "ac479078bfed1ca959fafa5187a43443e37e82b2e8fc0c162ead06d7ea22cec4",347   "language": "MATLAB",348   "lines": 48,349   "truncated": false,350   "block": 6,351   "row": 11106352  },353  {354   "path": "MouseBreathMetricsMaster/helpers/ProducePlotForCycleOfInhalationWindow.m",355   "sha256": "df8d96ad3872ff347908dfa4b77b66735446dfc831befaac63ab2356705657dd",356   "language": "MATLAB",357   "lines": 64,358   "truncated": false,359   "block": 6,360   "row": 12960361  },362  {363   "path": "MouseBreathMetricsMaster/helpers/RandomPosNegLogic.m",364   "sha256": "0a3da630b3079aac77e93d58cddac8c0abd4c203a23ef76428f44ae6556c131a",365   "language": "MATLAB",366   "lines": 8,367   "truncated": false,368   "block": 6,369   "row": 2391370  },371  {372   "path": "MouseBreathMetricsMaster/helpers/RemoveExtraCyclesFromSniffTrace.m",373   "sha256": "30c872611cf77039ba45392b291c17ed2ae39aacf7429db85828ce226d3d15c0",374   "language": "MATLAB",375   "lines": 190,376   "truncated": false,377   "block": 6,378   "row": 17661379  },380  {381   "path": "MouseBreathMetricsMaster/helpers/RemoveFieldsFromStrucrue.m",382   "sha256": "3ee1e6843a5335005c1a41c260a69b2e495c86412118f22c7f218b28544a297f",383   "language": "MATLAB",384   "lines": 11,385   "truncated": false,386   "block": 6,387   "row": 2704388  },389  {390   "path": "MouseBreathMetricsMaster/helpers/RemoveNaNs.m",391   "sha256": "e593dedb2b1e04a5596499b1fa0d5ae46063d14856fdd6154684ce230d6a9ad9",392   "language": "MATLAB",393   "lines": 21,394   "truncated": false,395   "block": 6,396   "row": 3887397  },398  {399   "path": "MouseBreathMetricsMaster/helpers/RemoveNaNsFromVector.m",400   "sha256": "0306eb5a1e7a688184206bd2fd63b559c48a55a64b8626186fde44f15366f854",401   "language": "MATLAB",402   "lines": 8,403   "truncated": false,404   "block": 6,405   "row": 3015406  },407  {408   "path": "MouseBreathMetricsMaster/helpers/RemoveNansFromHorizontalRows.m",409   "sha256": "5a0416c87af1092488402eedc8542a8ec34753cc024cde33e87315ef16d2a56a",410   "language": "MATLAB",411   "lines": 8,412   "truncated": false,413   "block": 6,414   "row": 2353415  },416  {417   "path": "MouseBreathMetricsMaster/helpers/ResortMap.m",418   "sha256": "2cf5a1de4d24817a8ca23cc0b72708a1e3a681d7c3dcfa6ab276648a38f43551",419   "language": "MATLAB",420   "lines": 10,421   "truncated": false,422   "block": 6,423   "row": 2614424  },425  {426   "path": "MouseBreathMetricsMaster/helpers/ReturnTsForShiftedInts.m",427   "sha256": "8c977a3b689a5877466184d6ae3d5c3697c10e062e3e00d94de440f05eba41fa",428   "language": "MATLAB",429   "lines": 24,430   "truncated": false,431   "block": 6,432   "row": 5391433  },434  {435   "path": "MouseBreathMetricsMaster/helpers/RunBreathMetricsOnEachChunk.m",436   "sha256": "ef1ae662e8e0d9ecfd4847373c67467ae5539995e69106010765d706d4c73be6",437   "language": "MATLAB",438   "lines": 216,439   "truncated": false,440   "block": 6,441   "row": 18033442  },443  {444   "path": "MouseBreathMetricsMaster/helpers/SAVE_Figure.m",445   "sha256": "239397879ebdf00042668bef4cad039e51d7a1f27ca49092224548e95e582fbf",446   "language": "MATLAB",447   "lines": 30,448   "truncated": false,449   "block": 6,450   "row": 4629451  },452  {453   "path": "MouseBreathMetricsMaster/helpers/StError.m",454   "sha256": "5e8f3510d6d4ec837005e7f7e4492f37b5326e37b90ec3e6014dc4bb228e6715",455   "language": "MATLAB",456   "lines": 20,457   "truncated": false,458   "block": 6,459   "row": 3564460  },461  {462   "path": "MouseBreathMetricsMaster/helpers/StickIntervalIfTooClose.m",463   "sha256": "0f0a60fcc7413e1d91462479345f75920e46784ad268dd8b7ed61fd29c534985",464   "language": "MATLAB",465   "lines": 17,466   "truncated": false,467   "block": 6,468   "row": 3768469  },470  {471   "path": "MouseBreathMetricsMaster/helpers/StitchUnlabeledEndsOfSnifflets.m",472   "sha256": "74faca91cbf9a5fc7b0492a32c94dead61a53ffe42f128536439963e18308e29",473   "language": "MATLAB",474   "lines": 128,475   "truncated": false,476   "block": 6,477   "row": 17208478  },479  {480   "path": "MouseBreathMetricsMaster/helpers/UpdataBmBobj.m",481   "sha256": "8f415341956faa75c24e4ab7ae6feb01958c6fc81d487ade0e86b108b9b137da",482   "language": "MATLAB",483   "lines": 87,484   "truncated": false,485   "block": 6,486   "row": 15427487  },488  {489   "path": "MouseBreathMetricsMaster/helpers/VisuallyInspectSniffSignalForSniffInt.m",490   "sha256": "e4c9d2e2fcb8e435c93185ee07da543702d897e7f54352d4b88682ffe46276d1",491   "language": "MATLAB",492   "lines": 40,493   "truncated": false,494   "block": 6,495   "row": 9958496  },497  {498   "path": "MouseBreathMetricsMaster/helpers/WhitenSignalIn.m",499   "sha256": "92c627d0a9ae9fd3664bfb62be4eb39847a83ad53c7fdc25dfa153bf6200f507",500   "language": "MATLAB",501   "lines": 453,502   "truncated": false,503   "block": 6,504   "row": 18406505  },506  {507   "path": "MouseBreathMetricsMaster/helpers/ZScoreWithNaNs.m",508   "sha256": "651a6c33d476b03313c8081cdd1c7b50129bedf43cd1f142e08c12f311514f9f",509   "language": "MATLAB",510   "lines": 10,511   "truncated": false,512   "block": 6,513   "row": 2865514  },515  {516   "path": "MouseBreathMetricsMaster/helpers/imagesc_2mat.m",517   "sha256": "d50516ccc9d8bd59d5b68465648f5d25a83c4781bce232a631a2630a0a3f558e",518   "language": "MATLAB",519   "lines": 47,520   "truncated": false,521   "block": 6,522   "row": 9646523  },524  {525   "path": "MouseBreathMetricsMaster/helpers/invert.m",526   "sha256": "b45cfb8713a964bd9cd9637c7bc9a324e67408e6fc8d830e74b14a13704219fd",527   "language": "MATLAB",528   "lines": 28,529   "truncated": false,530   "block": 6,531   "row": 4121532  },533  {534   "path": "MouseBreathMetricsMaster/helpers/max_and_idx.m",535   "sha256": "9d227838c3eea46631ed45ae4d28a254477ccef394386b87873727a892d0562f",536   "language": "MATLAB",537   "lines": 3,538   "truncated": false,539   "block": 6,540   "row": 2207541  },542  {543   "path": "MouseBreathMetricsMaster/helpers/min_and_idx.m",544   "sha256": "9eb6be51c9c2853167adc70a675d87168e1b4312d8e3929661a277467a0d6125",545   "language": "MATLAB",546   "lines": 3,547   "truncated": false,548   "block": 6,549   "row": 2208550  },551  {552   "path": "MouseBreathMetricsMaster/helpers/mtchglongIn.m",553   "sha256": "f3def91a2d698f2b5a056252dfd9e3ce5fc76aeb8371c83ef81ffc6b49c75f2c",554   "language": "MATLAB",555   "lines": 224,556   "truncated": false,557   "block": 6,558   "row": 16986559  },560  {561   "path": "MouseBreathMetricsMaster/helpers/rgb.m",562   "sha256": "95b48d76c53f97a6b483def8765171a3d8ebd52d5c16f3b075abbc0b0c03336e",563   "language": "MATLAB",564   "lines": 279,565   "truncated": false,566   "block": 3,567   "row": 16008568  },569  {570   "path": "MouseBreathMetricsMaster/helpers/scrollplot.m",571   "sha256": "f1d2fb2ae7a2863138c0d5cd03f046db73b194e80727d4e2a373b71e102357ed",572   "language": "MATLAB",573   "lines": 96,574   "truncated": false,575   "block": 6,576   "row": 12915577  },578  {579   "path": "PrepareBmObjForCnnPrediction.m",580   "sha256": "0044c42fd26caded87857dab32dbf8f748474b503ec7856b5343b11c3c0ef049",581   "language": "MATLAB",582   "lines": 50,583   "truncated": false,584   "block": 6,585   "row": 11211586  },587  {588   "path": "README.txt",589   "sha256": "b10cf233c2a16029c0853583c2229cad6a434c36dd5ffd2c1e83348e8db0ee42",590   "language": "Text",591   "lines": 48,592   "truncated": false,593   "block": 8,594   "row": 10116595  },596  {597   "path": "RespirationBasedStatePrediction.ipynb",598   "sha256": "08fcf076e05d73793f0129ba56ffe37e1907b921d1a5e717480785bb15a508ad",599   "language": "Jupyter",600   "lines": 342,601   "truncated": false,602   "block": 6,603   "row": 310604  },605  {606   "path": "TestRespiratorySignal.m",607   "sha256": "30347e8143947cdfd757f9aed36e44acfbadaffb6c604ba23c298c6081a26573",608   "language": "MATLAB",609   "lines": 106,610   "truncated": false,611   "block": 6,612   "row": 16405613  }614 ]615}