OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/barbourlab/lussac",4 "url": "https://github.com/BarbourLab/lussac",5 "host": "github.com",6 "commit": "2a0dce18ca9fd6f9d275b2e9dcba9fdcf588e83e",7 "license": "AGPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "8486a10c4393cee1c25392769ddd3b2d6c242d6ec7928e1414efff7dfb2f07ef",14 "language": "License",15 "lines": 661,16 "truncated": false,17 "block": 1,18 "row": 223019 },20 {21 "path": "README.md",22 "sha256": "edbbe393369032191ef2cf085bb8a016f1356d0ad2cd95b46e06d245b5178189",23 "language": "Text",24 "lines": 57,25 "truncated": false,26 "block": 8,27 "row": 992828 },29 {30 "path": "benchmarks/.ipynb_checkpoints/lussac_benchmark_injection-checkpoint.ipynb",31 "sha256": "112641fbacee91ecabc46c76ead7cd0f6403e722fe878a04e6d0966ac13a1c08",32 "language": "Jupyter",33 "lines": 1195,34 "truncated": false,35 "block": 6,36 "row": 118537 },38 {39 "path": "benchmarks/.ipynb_checkpoints/synthetic-checkpoint.ipynb",40 "sha256": "13e0152744f75facef0a4fa72a2ba365f795f68eacc2682d15ff09ca1e24d1cc",41 "language": "Jupyter",42 "lines": 1105,43 "truncated": false,44 "block": 6,45 "row": 114846 },47 {48 "path": "benchmarks/analyze_purkinje_pairs.py",49 "sha256": "726e503299568e67c01351f0cce3f6d81f8a8be0e7171716863ad02e289636b5",50 "language": "Python",51 "lines": 166,52 "truncated": false,53 "block": 6,54 "row": 4504655 },56 {57 "path": "benchmarks/figures.ipynb",58 "sha256": "359b732c8517587a4cfcb06da6cbc1404b69658d48c8461f5e4a824c156f4500",59 "language": "Jupyter",60 "lines": 2100,61 "truncated": false,62 "block": 6,63 "row": 125564 },65 {66 "path": "benchmarks/lussac_benchmark_injection.ipynb",67 "sha256": "112641fbacee91ecabc46c76ead7cd0f6403e722fe878a04e6d0966ac13a1c08",68 "language": "Jupyter",69 "lines": 1195,70 "truncated": false,71 "block": 6,72 "row": 118573 },74 {75 "path": "benchmarks/synthetic.ipynb",76 "sha256": "13e0152744f75facef0a4fa72a2ba365f795f68eacc2682d15ff09ca1e24d1cc",77 "language": "Jupyter",78 "lines": 1105,79 "truncated": false,80 "block": 6,81 "row": 114882 },83 {84 "path": "docs/source/conf.py",85 "sha256": "96ecbb7a1445e87a1ca85a576892ab931cf307b15751fc7edf074c5fbbacc304",86 "language": "Python",87 "lines": 31,88 "truncated": false,89 "block": 6,90 "row": 2442591 },92 {93 "path": "src/lussac/__init__.py",94 "sha256": "194ad28658c8a61dc03a1bc4145fba518ac62daa21ffd091dfa341a5bcdbefc6",95 "language": "Python",96 "lines": 7,97 "truncated": false,98 "block": 6,99 "row": 20730100 },101 {102 "path": "src/lussac/core/__init__.py",103 "sha256": "5b7302042004929ac16089cba84c68d4c4cc2bea3def6809a75ef41303bc7ef4",104 "language": "Python",105 "lines": 6,106 "truncated": false,107 "block": 6,108 "row": 21756109 },110 {111 "path": "src/lussac/core/lussac_data.py",112 "sha256": "e4301e01adbceb8023861e9d6b13b937f35e780088a164d6e4f432810b412ade",113 "language": "Python",114 "lines": 493,115 "truncated": false,116 "block": 7,117 "row": 6281118 },119 {120 "path": "src/lussac/core/lussac_params.py",121 "sha256": "33c362cfa4ac6b5960c98710b701832ee9d9055db41cb945211c4ad5da7dc9a1",122 "language": "Python",123 "lines": 75,124 "truncated": false,125 "block": 6,126 "row": 32558127 },128 {129 "path": "src/lussac/core/module.py",130 "sha256": "abde30977e77977636c6b7f27dafefa854b9d73caa41f0acbe07c93e9df4da37",131 "language": "Python",132 "lines": 438,133 "truncated": false,134 "block": 7,135 "row": 6653136 },137 {138 "path": "src/lussac/core/module_factory.py",139 "sha256": "14603679262f3742326a2c5e4c8b110d0b382c2eccf28e6022c8b89c08843f85",140 "language": "Python",141 "lines": 91,142 "truncated": false,143 "block": 6,144 "row": 34233145 },146 {147 "path": "src/lussac/core/pipeline.py",148 "sha256": "2e05ad00f119ff1d3e8e5d0720ab213fecf40bb21613d858cb799fdfcefb27d4",149 "language": "Python",150 "lines": 317,151 "truncated": false,152 "block": 7,153 "row": 3469154 },155 {156 "path": "src/lussac/core/spike_sorting.py",157 "sha256": "6a10cdcc832f7dc2962651d9697c37a856eacb1f5ac23812be250e8704382a56",158 "language": "Python",159 "lines": 70,160 "truncated": false,161 "block": 6,162 "row": 32399163 },164 {165 "path": "src/lussac/main.py",166 "sha256": "eea6d27be96b393dbb3ca7c155a9da2ed79402fe9dd3e446fa537c2c89702d92",167 "language": "Python",168 "lines": 49,169 "truncated": false,170 "block": 6,171 "row": 27780172 },173 {174 "path": "src/lussac/modules/__init__.py",175 "sha256": "92f0ee3064c2f8190be33aa1b39c4e5618ae682435ee28754101b7c9b360f08a",176 "language": "Python",177 "lines": 10,178 "truncated": false,179 "block": 6,180 "row": 22577181 },182 {183 "path": "src/lussac/modules/align_units.py",184 "sha256": "e9657430068f85de8e0e4a9deb390c47f3a2d3cbec08a8ca1e3fac98a359a214",185 "language": "Python",186 "lines": 145,187 "truncated": false,188 "block": 6,189 "row": 42254190 },191 {192 "path": "src/lussac/modules/export_to_phy.py",193 "sha256": "e3ebdaf7e401314ad608c08e68e527a338107503bfc381be541eaabaae301c45",194 "language": "Python",195 "lines": 145,196 "truncated": false,197 "block": 6,198 "row": 41550199 },200 {201 "path": "src/lussac/modules/export_to_sigui.py",202 "sha256": "0b2b6a99e8b69566121e596bcfe737015357ef15cb19657df8a38cac8a9da36e",203 "language": "Python",204 "lines": 65,205 "truncated": false,206 "block": 6,207 "row": 31420208 },209 {210 "path": "src/lussac/modules/find_purkinje_cells.py",211 "sha256": "bbb92a357450b91964b731d88d6ca32cf9612a492cd990aecd9d63ccb2ce3d06",212 "language": "Python",213 "lines": 77,214 "truncated": false,215 "block": 6,216 "row": 36946217 },218 {219 "path": "src/lussac/modules/merge_sortings.py",220 "sha256": "8989dd2a2534b546d4b42c1d3f4a78d485ec64c3242c3db35e2c4b642080bac0",221 "language": "Python",222 "lines": 716,223 "truncated": false,224 "block": 7,225 "row": 10668226 },227 {228 "path": "src/lussac/modules/merge_units.py",229 "sha256": "4ab5157655c2c514997fd844958fa13f859679703e2628ad3cff025526de0152",230 "language": "Python",231 "lines": 385,232 "truncated": false,233 "block": 7,234 "row": 6338235 },236 {237 "path": "src/lussac/modules/remove_bad_units.py",238 "sha256": "1405704f02931fd8254f94140f0402b4ac5ae4bbbd9cfb97b90fb65090ff02cd",239 "language": "Python",240 "lines": 87,241 "truncated": false,242 "block": 6,243 "row": 36566244 },245 {246 "path": "src/lussac/modules/remove_duplicated_spikes.py",247 "sha256": "1460d4086d9412d7b51b24d61d2e2e73f4699dc5ecf429fc79f917f780e2da92",248 "language": "Python",249 "lines": 24,250 "truncated": false,251 "block": 6,252 "row": 23708253 },254 {255 "path": "src/lussac/modules/remove_redundant_units.py",256 "sha256": "b3ce9f1bf71b2da336dbfa38a0e76cca930ae839dc3aa4a5183e71ca72a1fadf",257 "language": "Python",258 "lines": 105,259 "truncated": false,260 "block": 6,261 "row": 38169262 },263 {264 "path": "src/lussac/modules/units_categorization.py",265 "sha256": "1b8c11cf3209e5d7cbfa7da4653157439ada609b8593c5553bf786c173d8e829",266 "language": "Python",267 "lines": 80,268 "truncated": false,269 "block": 6,270 "row": 34459271 },272 {273 "path": "src/lussac/utils/__init__.py",274 "sha256": "176eb50291e804d779615fa2a0c9071094d98c497ea73c055e534ade893c6e03",275 "language": "Python",276 "lines": 5,277 "truncated": false,278 "block": 6,279 "row": 23475280 },281 {282 "path": "src/lussac/utils/misc.py",283 "sha256": "4e3bd8aa5526c6883bc32b0fdec8653cb9a858fa355d3f5465964f6f6348ef0c",284 "language": "Python",285 "lines": 787,286 "truncated": false,287 "block": 7,288 "row": 10330289 },290 {291 "path": "src/lussac/utils/plotting.py",292 "sha256": "94f62f32e5220dd24bc6e7d2cdfe4b5650a0726794dc6fb04f83d77a315962ac",293 "language": "Python",294 "lines": 297,295 "truncated": false,296 "block": 7,297 "row": 3101298 },299 {300 "path": "src/lussac/utils/variables.py",301 "sha256": "f603bcc181ffa4fccb1bd83ef2a79262548fde68428d13140117e23753cb5b18",302 "language": "Python",303 "lines": 20,304 "truncated": false,305 "block": 6,306 "row": 23121307 },308 {309 "path": "tests/conftest.py",310 "sha256": "dd657fc4618aa1dea9bbaa49e1bdd9f23520e9afa00cd54750e671eacab1b167",311 "language": "Python",312 "lines": 55,313 "truncated": false,314 "block": 6,315 "row": 30868316 },317 {318 "path": "tests/core/test_lussac_data.py",319 "sha256": "49be299400dbcf70eb0f895217b82b137adcdb776412b2a9d280ef1578055c83",320 "language": "Python",321 "lines": 116,322 "truncated": false,323 "block": 6,324 "row": 38050325 },326 {327 "path": "tests/core/test_lussac_params.py",328 "sha256": "42c42ecc2ef9b0c82fda06fbf8b2ad90b407886567989f7a78cb8c565aa10617",329 "language": "Python",330 "lines": 8,331 "truncated": false,332 "block": 6,333 "row": 21663334 },335 {336 "path": "tests/core/test_modulefactory.py",337 "sha256": "5d72846ad5a0a719493b442f5b8ad4922f31fb33ef3d2f525004ccd0ccb31e31",338 "language": "Python",339 "lines": 80,340 "truncated": false,341 "block": 6,342 "row": 32811343 },344 {345 "path": "tests/core/test_mono_sorting_data.py",346 "sha256": "147a5e33d602d9272f90eece6ff9407ca4877084f38a5d99b288e555bc3f044f",347 "language": "Python",348 "lines": 35,349 "truncated": false,350 "block": 6,351 "row": 26905352 },353 {354 "path": "tests/core/test_mono_sorting_module.py",355 "sha256": "3e239ad2b59477caadf42ab7f999133485781c276dc92d2f89a40c19972fa18c",356 "language": "Python",357 "lines": 166,358 "truncated": false,359 "block": 6,360 "row": 41645361 },362 {363 "path": "tests/core/test_multi_sortings_data.py",364 "sha256": "a5529971982d6c545ef236bca9e879bb45f03f83eeabbc1adc20b68431972600",365 "language": "Python",366 "lines": 21,367 "truncated": false,368 "block": 6,369 "row": 24182370 },371 {372 "path": "tests/core/test_multi_sortings_module.py",373 "sha256": "82198f17026e639815cf5955cedf2a7949b75be865e563488bd4af47b6a24fc7",374 "language": "Python",375 "lines": 37,376 "truncated": false,377 "block": 6,378 "row": 24974379 },380 {381 "path": "tests/core/test_pipeline.py",382 "sha256": "6f2687a0403b9881d0370b2265b8b8b494fb95b067c0222671dc1dfa95534607",383 "language": "Python",384 "lines": 268,385 "truncated": false,386 "block": 7,387 "row": 2141388 },389 {390 "path": "tests/core/test_spike_sorting.py",391 "sha256": "806076b4fc90be6cefaca84ac296a752ec9fe669a7f91562590dc1ab1350c8cc",392 "language": "Python",393 "lines": 61,394 "truncated": false,395 "block": 6,396 "row": 32871397 },398 {399 "path": "tests/modules/test_align_units.py",400 "sha256": "d07f959f8019fc5693535dc76568bb035cb6487e785fe886df3d68dcc8ac40bf",401 "language": "Python",402 "lines": 64,403 "truncated": false,404 "block": 6,405 "row": 33080406 },407 {408 "path": "tests/modules/test_export_to_phy.py",409 "sha256": "37d813d940a1b54b5bb8c02c0da6132bfe57e453e5deae0b80fc392c000c2072",410 "language": "Python",411 "lines": 97,412 "truncated": false,413 "block": 6,414 "row": 37778415 },416 {417 "path": "tests/modules/test_export_to_sigui.py",418 "sha256": "c8bd923226b5cf4938e70af3bb726e5a02d957505caf9458f7e06b0b434e7910",419 "language": "Python",420 "lines": 45,421 "truncated": false,422 "block": 6,423 "row": 29705424 },425 {426 "path": "tests/modules/test_find_purkinje_cells.py",427 "sha256": "1d939a84e0bedf3c31243d4cd30c2c7ecdb09da12d3177f988b9689cad78f911",428 "language": "Python",429 "lines": 27,430 "truncated": false,431 "block": 6,432 "row": 26244433 },434 {435 "path": "tests/modules/test_merge_sortings.py",436 "sha256": "9589d5ce00febb33aebac9e36a41dd42161f928c8e80f4688c3aefc99e999997",437 "language": "Python",438 "lines": 283,439 "truncated": false,440 "block": 7,441 "row": 4381442 },443 {444 "path": "tests/modules/test_merge_units.py",445 "sha256": "680cb4c29e304c8b79f95f8d26671136372ddc9423c971fe660e09bb2c67edec",446 "language": "Python",447 "lines": 64,448 "truncated": false,449 "block": 6,450 "row": 35559451 },452 {453 "path": "tests/modules/test_remove_bad_units.py",454 "sha256": "d81ee197e032fa7ac06fcbb4307cb6bb655f20c58f3315b830b41654db7cef6c",455 "language": "Python",456 "lines": 55,457 "truncated": false,458 "block": 6,459 "row": 29438460 },461 {462 "path": "tests/modules/test_remove_duplicated_spikes.py",463 "sha256": "3936233f774b249c0931508d13f698885c1666ca492ce3d9a54317d051d0ca19",464 "language": "Python",465 "lines": 22,466 "truncated": false,467 "block": 6,468 "row": 26151469 },470 {471 "path": "tests/modules/test_remove_redundant_units.py",472 "sha256": "bff33e760d4f9b9551535edb81a9d690ad4b68b0c782924ae08ba270c9677739",473 "language": "Python",474 "lines": 28,475 "truncated": false,476 "block": 6,477 "row": 27605478 },479 {480 "path": "tests/modules/test_units_categorization.py",481 "sha256": "c00a0d1cc1d96e4d26ca36cc9d753fdf049ab3e4771a5ed63726fc67f0bbabed",482 "language": "Python",483 "lines": 36,484 "truncated": false,485 "block": 6,486 "row": 25532487 },488 {489 "path": "tests/test_main.py",490 "sha256": "60d08193ff0741fc6bc6ba29949bf78c6807db0da71a7c7027237d3d28ee3682",491 "language": "Python",492 "lines": 44,493 "truncated": false,494 "block": 6,495 "row": 29794496 },497 {498 "path": "tests/utils/test_0variables.py",499 "sha256": "77b93bc025a5230ee279742955c283b6775d1a22ca04f10d8d24c1a6d606a646",500 "language": "Python",501 "lines": 10,502 "truncated": false,503 "block": 6,504 "row": 22166505 },506 {507 "path": "tests/utils/test_misc.py",508 "sha256": "6e044c81b8d0aba46ba036bb6060ece890d5dd6a389fec44523e08758a78fcc5",509 "language": "Python",510 "lines": 392,511 "truncated": false,512 "block": 7,513 "row": 6933514 },515 {516 "path": "tests/utils/test_plotting.py",517 "sha256": "751b095ce026253bbcf77c202005ad55a6898e8096036e281b579dadf7eaa75c",518 "language": "Python",519 "lines": 72,520 "truncated": false,521 "block": 6,522 "row": 34704523 }524 ]525}