OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "gitlab.com/cfinan/gwas-norm",4 "url": "https://gitlab.com/cfinan/gwas-norm",5 "host": "gitlab.com",6 "commit": "04b05b9eeb43a67266e4350a0e27f75ec0f2e0a3",7 "license": "MIT",8 "license_confirmed_by": "license file LICENCE.txt",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENCE.txt",13   "sha256": "002c2696d92b5c8cf956c11072baa58eaf9f6ade995c031ea635c6a1ee342ad1",14   "language": "License",15   "lines": 21,16   "truncated": false,17   "block": 6,18   "row": 153419  },20  {21   "path": "README.md",22   "sha256": "ad20b7bbd4e266932478753239276ec43d38204c39b01b87513e13e29445cb74",23   "language": "Text",24   "lines": 35,25   "truncated": false,26   "block": 8,27   "row": 969628  },29  {30   "path": "docs/source/conf.py",31   "sha256": "23ff2e837d23df47fbf40e8710bddcc4ce253d1ebeb9a1bbdf59266f7b54c721",32   "language": "Python",33   "lines": 86,34   "truncated": false,35   "block": 6,36   "row": 3557737  },38  {39   "path": "gwas_norm/__init__.py",40   "sha256": "0c4fd4b550c74f33a6f43582ce2c8a24ce3457ce02c65b2563f7ea83e4bd0a30",41   "language": "Python",42   "lines": 1,43   "truncated": false,44   "block": 6,45   "row": 2017646  },47  {48   "path": "gwas_norm/_version.py",49   "sha256": "0c4fd4b550c74f33a6f43582ce2c8a24ce3457ce02c65b2563f7ea83e4bd0a30",50   "language": "Python",51   "lines": 1,52   "truncated": false,53   "block": 6,54   "row": 2017655  },56  {57   "path": "gwas_norm/columns.py",58   "sha256": "eea903a7f5b70a20b941948edb7e01f0f843d3d7c9c57bc987a22a522148e6d5",59   "language": "Python",60   "lines": 1083,61   "truncated": false,62   "block": 7,63   "row": 1018264  },65  {66   "path": "gwas_norm/common.py",67   "sha256": "c945da0f70fa3c8d4a79729b25e50f26ccf1f800829c593c85b01d7f6e5c2092",68   "language": "Python",69   "lines": 1167,70   "truncated": false,71   "block": 7,72   "row": 1127773  },74  {75   "path": "gwas_norm/constants.py",76   "sha256": "ae24391e506df736a395c9c9055b3550073bb4f5cfc7bab25367c8c70543af54",77   "language": "Python",78   "lines": 318,79   "truncated": false,80   "block": 7,81   "row": 263782  },83  {84   "path": "gwas_norm/controllers.py",85   "sha256": "af64c759ddb2de4d9dccb0b98f2180c8d00507e079b9baa74a7ee5e1f8c16899",86   "language": "Python",87   "lines": 2368,88   "truncated": false,89   "block": 8,90   "row": 96791  },92  {93   "path": "gwas_norm/crossmap.py",94   "sha256": "3e0a780bcd3346392b1bacbb9832ebed308278113a70c1289f9b762dc3de45ef",95   "language": "Python",96   "lines": 647,97   "truncated": false,98   "block": 7,99   "row": 9416100  },101  {102   "path": "gwas_norm/errors.py",103   "sha256": "899b4cbf370e0ad6170da38e13f505191b603173aa89a758a2a83e65cb7b989f",104   "language": "Python",105   "lines": 28,106   "truncated": false,107   "block": 6,108   "row": 25404109  },110  {111   "path": "gwas_norm/example_data/examples.py",112   "sha256": "00f75fa9d7c061456473cb7e7cd5a882e94173d2b0b480f91bedc8168178724a",113   "language": "Python",114   "lines": 817,115   "truncated": false,116   "block": 7,117   "row": 9893118  },119  {120   "path": "gwas_norm/files.py",121   "sha256": "a6223a63706966b2a4c001595a2862184ecce64d378c252b03b7d69f9185ee4d",122   "language": "Python",123   "lines": 1314,124   "truncated": false,125   "block": 8,126   "row": 287127  },128  {129   "path": "gwas_norm/genome_assemblies.py",130   "sha256": "3676635ff443697fdba65ffeba038f988c6fea6c61143ba2403535a07ecc0c31",131   "language": "Python",132   "lines": 196,133   "truncated": false,134   "block": 6,135   "row": 45457136  },137  {138   "path": "gwas_norm/gwas_norm_run.py",139   "sha256": "157455a0619ce8ec3a61985309cf7c87b265a01f8fcf8f08c5f2370e9cc1ea45",140   "language": "Python",141   "lines": 1093,142   "truncated": false,143   "block": 8,144   "row": 126145  },146  {147   "path": "gwas_norm/handlers.py",148   "sha256": "5f1e2defd7eacc160d92f1e619aa95d3e9d55c23ebca79d8ec325b7f7b1f4d06",149   "language": "Python",150   "lines": 1619,151   "truncated": false,152   "block": 8,153   "row": 566154  },155  {156   "path": "gwas_norm/hpc/hpc_gwas_norm.py",157   "sha256": "4cec0d6edab3fe50836f965ef5b58eecee05efa8db6ec2a93648a7065b069624",158   "language": "Python",159   "lines": 712,160   "truncated": false,161   "block": 7,162   "row": 10509163  },164  {165   "path": "gwas_norm/metadata/analysis.py",166   "sha256": "5ebde240dbe3e2450e0543399328ea3e9276f6aaaf5684d483e72c08d536a003",167   "language": "Python",168   "lines": 1086,169   "truncated": false,170   "block": 7,171   "row": 11457172  },173  {174   "path": "gwas_norm/metadata/base.py",175   "sha256": "dd5e03b9a628d9a25c3c19d1e9f481057cb6653fe90790808f87065a42be1356",176   "language": "Python",177   "lines": 550,178   "truncated": false,179   "block": 7,180   "row": 7698181  },182  {183   "path": "gwas_norm/metadata/cohort.py",184   "sha256": "6b961c9b272c5bb151327f2a66230ab473bf50ddd90822c2797a4fa13f1b51cd",185   "language": "Python",186   "lines": 1397,187   "truncated": false,188   "block": 8,189   "row": 317190  },191  {192   "path": "gwas_norm/metadata/column.py",193   "sha256": "4ba118a8ac67e031228e668b59a32d6b9727114b5ba0c983d8ffbba697e0d76c",194   "language": "Python",195   "lines": 251,196   "truncated": false,197   "block": 7,198   "row": 1585199  },200  {201   "path": "gwas_norm/metadata/convert.py",202   "sha256": "be7afe598b60b25f19c406c68130afc491244c06371f3d6d20310e595423b64d",203   "language": "Python",204   "lines": 964,205   "truncated": false,206   "block": 7,207   "row": 10088208  },209  {210   "path": "gwas_norm/metadata/file.py",211   "sha256": "d80f3b0f8dfcae51636c48d23f9156c6574e3f323682d30d0f2eacd6d1bb41ac",212   "language": "Python",213   "lines": 1633,214   "truncated": false,215   "block": 8,216   "row": 564217  },218  {219   "path": "gwas_norm/metadata/gwas_data.py",220   "sha256": "7c248bdbf45f5f28d36ae521a4f97e3441aef156206c883ea57318bbf9fd0cb7",221   "language": "Python",222   "lines": 503,223   "truncated": false,224   "block": 7,225   "row": 7616226  },227  {228   "path": "gwas_norm/metadata/info.py",229   "sha256": "050e2fa2596179af0b86e421d44f1dae1bb56040c8dbfedc7bc0625531d00c67",230   "language": "Python",231   "lines": 247,232   "truncated": false,233   "block": 7,234   "row": 332235  },236  {237   "path": "gwas_norm/metadata/phenotype.py",238   "sha256": "4b6b71bed41abe248a841ee14aa8699d5f1271b78e13721ce8856fdf9b8683d0",239   "language": "Python",240   "lines": 955,241   "truncated": false,242   "block": 7,243   "row": 10879244  },245  {246   "path": "gwas_norm/metadata/study.py",247   "sha256": "4c36f33f6448af5a8b47fdeedb8500b8acfe2429778044056321bf624d99d251",248   "language": "Python",249   "lines": 1505,250   "truncated": false,251   "block": 8,252   "row": 488253  },254  {255   "path": "gwas_norm/metadata/test.py",256   "sha256": "1f2ea28ac5c035b19ffd50495c734aa401e64b2ba509606bd8b8c6c12ae5101c",257   "language": "Python",258   "lines": 623,259   "truncated": false,260   "block": 7,261   "row": 8717262  },263  {264   "path": "gwas_norm/normalise.py",265   "sha256": "3bbdb7ccced393c72af5fced560e511f6103d8b4cad9b4e6defea530b4e40624",266   "language": "Python",267   "lines": 3150,268   "truncated": false,269   "block": 8,270   "row": 1085271  },272  {273   "path": "gwas_norm/parsers.py",274   "sha256": "21819aa6222fdf019145424553bdfd09ae93b7ba01f342c53a1c58e3fd6298ab",275   "language": "Python",276   "lines": 890,277   "truncated": false,278   "block": 7,279   "row": 9865280  },281  {282   "path": "gwas_norm/stats.py",283   "sha256": "134bab330f8951c66b8dc6a7f17f3b15c9deb54a6515c1d6c0fabe10d7d62c30",284   "language": "Python",285   "lines": 182,286   "truncated": false,287   "block": 6,288   "row": 41510289  },290  {291   "path": "gwas_norm/tests.py",292   "sha256": "dfb4d7107a11b1d28c9ce478c1279d86fe0e8aafefbef4ca6fb238d8a7f55b17",293   "language": "Python",294   "lines": 4684,295   "truncated": false,296   "block": 8,297   "row": 1164298  },299  {300   "path": "resources/bin/list-norm-files.sh",301   "sha256": "c021fc4da9f4d044d13ef8c66e9550e20de2431c3126545793a1987e05df5044",302   "language": "Shell",303   "lines": 99,304   "truncated": false,305   "block": 8,306   "row": 8784307  },308  {309   "path": "resources/ci_cd/before_script.sh",310   "sha256": "74875cb931d0636fad50840bfaa1b17dee94337b34be5894d6378c8498f60653",311   "language": "Shell",312   "lines": 23,313   "truncated": false,314   "block": 8,315   "row": 7119316  },317  {318   "path": "resources/ci_cd/pages.sh",319   "sha256": "26b3230222019e79dd6c4dd369c6f5f6d11793e3cf37293650a62c304455f6b0",320   "language": "Shell",321   "lines": 32,322   "truncated": false,323   "block": 8,324   "row": 7476325  },326  {327   "path": "resources/ci_cd/pypi-upload.sh",328   "sha256": "36ceb9338d63ea4dca8d769dcbae99f414eef5819ac11d1bd9f2efab26515d40",329   "language": "Shell",330   "lines": 8,331   "truncated": false,332   "block": 8,333   "row": 6802334  },335  {336   "path": "resources/ci_cd/run_docker.sh",337   "sha256": "ce417b0f1af1433432a2d742bdd098137d8a879adda5b432d7c8b5d5ff1fa672",338   "language": "Shell",339   "lines": 57,340   "truncated": false,341   "block": 8,342   "row": 8315343  },344  {345   "path": "resources/ci_cd/run_pages.sh",346   "sha256": "f288fe2040bebdb9d9515513edd62ea48a3fb0bef39b6fc0b2e7d69d65243989",347   "language": "Shell",348   "lines": 32,349   "truncated": false,350   "block": 8,351   "row": 7507352  },353  {354   "path": "resources/examples/metadata_api.ipynb",355   "sha256": "918a0fc7a6a2a72a6b8b83615db9ee1b1e01eb0c209e00993fc0405de9e5e760",356   "language": "Jupyter",357   "lines": 291,358   "truncated": false,359   "block": 6,360   "row": 455361  },362  {363   "path": "resources/misc/cohort.py",364   "sha256": "1c65b67589e23b5afa27fac27f73918f2f73c324712610087e6a7e5b968fe1ba",365   "language": "Python",366   "lines": 108,367   "truncated": false,368   "block": 6,369   "row": 34282370  },371  {372   "path": "resources/misc/convert_xmls.sh",373   "sha256": "7f91e2ad7155dd60419c5e5dac7c8905ef974e9a63e4c70fe8f7ff5366fafa2c",374   "language": "Shell",375   "lines": 115,376   "truncated": false,377   "block": 8,378   "row": 8797379  },380  {381   "path": "resources/misc/extract-xml-info.py",382   "sha256": "82aad99257bfc21ee308803420609652ed71b5cc078457315884af27ef79d644",383   "language": "Python",384   "lines": 372,385   "truncated": false,386   "block": 7,387   "row": 4793388  },389  {390   "path": "resources/misc/make-test-data.py",391   "sha256": "f2d336edd4fa94f03036bead85bfaf187350f1800d5b9718e6242223c80485f5",392   "language": "Python",393   "lines": 729,394   "truncated": false,395   "block": 7,396   "row": 8877397  },398  {399   "path": "resources/misc/old/old_code/1kg.py",400   "sha256": "f5a3618b5359a01600d3a470a5e05dacc33b38d05f4641a6541bb916d1cc4313",401   "language": "Python",402   "lines": 485,403   "truncated": false,404   "block": 7,405   "row": 6883406  },407  {408   "path": "resources/misc/old/old_code/alfa.py",409   "sha256": "2d352718b56d75ad604909cea134d6d5803d7c0e607c9ccfadcaf67a6679eb99",410   "language": "Python",411   "lines": 274,412   "truncated": false,413   "block": 7,414   "row": 437415  },416  {417   "path": "resources/misc/old/old_code/arrays.py",418   "sha256": "c3f3b39b079fa22c360e7abfae7fec1e8b930b84b4e7d997336cdaf6655cca92",419   "language": "Python",420   "lines": 847,421   "truncated": false,422   "block": 7,423   "row": 10762424  },425  {426   "path": "resources/misc/old/old_code/batch_proc_old.py",427   "sha256": "57a27abbd874903dbaf861f3e5bf5f26a0f6ffa178a5259e45b7fcbdeb8ab530",428   "language": "Python",429   "lines": 342,430   "truncated": false,431   "block": 7,432   "row": 5875433  },434  {435   "path": "resources/misc/old/old_code/define_match.py",436   "sha256": "6e282284edd6923cc8d91466a698ebcc4860958e9e224ebf122c22412f6d9d29",437   "language": "Python",438   "lines": 119,439   "truncated": false,440   "block": 6,441   "row": 40938442  },443  {444   "path": "resources/misc/old/old_code/liftover_test.ipynb",445   "sha256": "317e2b37f430b0fa74cf4f364b4b4873bfda0660de0119c34186e49e180105c5",446   "language": "Jupyter",447   "lines": 69,448   "truncated": false,449   "block": 5,450   "row": 16121451  },452  {453   "path": "resources/misc/old/old_code/mapper_file_code.py",454   "sha256": "3b9be07027869612e0b2b091cd712a6a093762783afe42dc04b242f745b670b7",455   "language": "Python",456   "lines": 283,457   "truncated": false,458   "block": 7,459   "row": 3943460  },461  {462   "path": "resources/misc/old/old_code/mappers.py",463   "sha256": "7ca296ffb07bebf4e39c31eca1417221eb2f26f7da1595aa98703b1474ef4ddd",464   "language": "Python",465   "lines": 3020,466   "truncated": false,467   "block": 8,468   "row": 1103469  },470  {471   "path": "resources/misc/old/old_code/mapping_files.py",472   "sha256": "05821d853e428b0eec17f42e4258274a938684f69138ecbc169ac2ed4d54f713",473   "language": "Python",474   "lines": 1248,475   "truncated": false,476   "block": 7,477   "row": 11912478  },479  {480   "path": "resources/misc/old/old_code/mapping_utils.py",481   "sha256": "26336e222024559b965c49c0d5b311ec147fb98d2303bf30ec6d19663a14d43c",482   "language": "Python",483   "lines": 388,484   "truncated": false,485   "block": 7,486   "row": 6131487  },488  {489   "path": "resources/misc/old/old_code/merge_1kg_freq.sh",490   "sha256": "7d048690151db999899e122237b88d5dd72d9ab810637c7dc5fb32e3de9e8367",491   "language": "Shell",492   "lines": 10,493   "truncated": false,494   "block": 8,495   "row": 6646496  },497  {498   "path": "resources/misc/old/old_code/process_alfa.sh",499   "sha256": "f8437a4b5e1c6b025572f51531c59e4f23ce7f836ce7c0568f9f7be5cb02cb5f",500   "language": "Shell",501   "lines": 29,502   "truncated": false,503   "block": 8,504   "row": 7769505  },506  {507   "path": "resources/misc/old/old_code/process_ensembl_dbsnp.sh",508   "sha256": "ac063aa051bebf0708f0b71e5e856130b18bd115dbf9f3ee4b983dd8f3fad069",509   "language": "Shell",510   "lines": 33,511   "truncated": false,512   "block": 8,513   "row": 7776514  },515  {516   "path": "resources/misc/old/old_code/process_ukbb.sh",517   "sha256": "78798d01d1f31abbbde07129a95c7eb4a030a97ac7cb55a3c2ce5a31f4695ac5",518   "language": "Shell",519   "lines": 17,520   "truncated": false,521   "block": 8,522   "row": 6822523  },524  {525   "path": "resources/misc/old/old_code/test_config_obj.py",526   "sha256": "297eea8f9e687a139d84538ef1283d259445f3582e887290adbfb44bd0b25f5f",527   "language": "Python",528   "lines": 388,529   "truncated": false,530   "block": 7,531   "row": 4643532  },533  {534   "path": "resources/misc/old/old_code/test_config_parser.py",535   "sha256": "db3d3ffc9cd5be893315cf59950994babac89e1138a22bbc3edd44e28a997f8d",536   "language": "Python",537   "lines": 250,538   "truncated": false,539   "block": 7,540   "row": 820541  },542  {543   "path": "resources/misc/old/old_code/vcf.py",544   "sha256": "081116100cfa8bbaf79c9aba439dd8720aca6eb33cf82398b983e78d119b14bd",545   "language": "Python",546   "lines": 12,547   "truncated": false,548   "block": 6,549   "row": 21608550  },551  {552   "path": "resources/misc/old/tests/utils/conftest.py",553   "sha256": "2e28393fc570646b673f66f8d2f69627cae9a6a910f7670c6d2ff06665847f87",554   "language": "Python",555   "lines": 49,556   "truncated": false,557   "block": 6,558   "row": 31298559  },560  {561   "path": "resources/misc/old/tests/utils/test_upgrade_norm.py",562   "sha256": "b64fe0564f71ed39f931b8185a1c1db75ead6003c6763747180e95ba492b4dfa",563   "language": "Python",564   "lines": 221,565   "truncated": false,566   "block": 7,567   "row": 394568  },569  {570   "path": "resources/misc/old/v0.2-code/config.py",571   "sha256": "fcf60e360a335aa45946eee0d38cdc8fd5fb625ab6f213c9d3b9e155eeba0b41",572   "language": "Python",573   "lines": 604,574   "truncated": false,575   "block": 7,576   "row": 8948577  },578  {579   "path": "resources/misc/old/v0.2-code/database/add_to_db.py",580   "sha256": "2c03723cdad16e780b3b6e78cac9a015afb5c2451a6711e0fe3b356dc86a8bc0",581   "language": "Python",582   "lines": 594,583   "truncated": false,584   "block": 7,585   "row": 8081586  },587  {588   "path": "resources/misc/old/v0.2-code/external.py",589   "sha256": "46ef7c42a7eb488c002c4778b44822e79926b636c9460bba0d127319fb950254",590   "language": "Python",591   "lines": 56,592   "truncated": false,593   "block": 6,594   "row": 28363595  },596  {597   "path": "resources/misc/old/v0.2-code/gwas_norm_premap.py",598   "sha256": "b95aa5c3b58d0f0f55dca06346d89fcc734e6976e644e7538ff7089c8407f5f4",599   "language": "Python",600   "lines": 935,601   "truncated": false,602   "block": 7,603   "row": 11721604  },605  {606   "path": "resources/misc/old/v0.2-code/log.py",607   "sha256": "53a0e3426bf46896467a3e238b7f2fa9e7c188b0c94dabfe8e1f1f3735575620",608   "language": "Python",609   "lines": 248,610   "truncated": false,611   "block": 7,612   "row": 430613  },614  {615   "path": "resources/misc/old/v0.2-code/map_file/dbsnp/clinvar.py",616   "sha256": "85d9fa5c5eee46663885c255f6a90d2f65f5a7e786786ec8a1cbfab01120a29f",617   "language": "Python",618   "lines": 391,619   "truncated": false,620   "block": 7,621   "row": 5115622  },623  {624   "path": "resources/misc/old/v0.2-code/map_file/dbsnp/download.py",625   "sha256": "d88af55c270033b9b0e758874cfdf4507ac9456cbe638a336b4c3666ed9356c4",626   "language": "Python",627   "lines": 813,628   "truncated": false,629   "block": 7,630   "row": 10535631  },632  {633   "path": "resources/misc/old/v0.2-code/map_file/dbsnp/parse.py",634   "sha256": "f8eb8d996f8b26e7b98a1d82c30a780af22149acc380ea0e06229b13aa4b1cae",635   "language": "Python",636   "lines": 2450,637   "truncated": false,638   "block": 8,639   "row": 956640  },641  {642   "path": "resources/misc/old/v0.2-code/old/config_obj.py",643   "sha256": "5ac6b7d4e53e9ee25eee0de41e06eda9a1bff9f968b2971a560a081f906591ca",644   "language": "Python",645   "lines": 1316,646   "truncated": false,647   "block": 8,648   "row": 228649  },650  {651   "path": "resources/misc/old/v0.2-code/old/config_parser.py",652   "sha256": "c08c2f2170a726de7aecdec465e91b3395ed3d0880823d22859aca2893630505",653   "language": "Python",654   "lines": 2105,655   "truncated": false,656   "block": 8,657   "row": 723658  },659  {660   "path": "resources/misc/old/v0.2-code/old/crossmap.py",661   "sha256": "ffaee4de1c9c194122b62ec88c4927c70ab1755e06f7df6df18b91c99121a8bb",662   "language": "Python",663   "lines": 975,664   "truncated": false,665   "block": 7,666   "row": 11566667  },668  {669   "path": "resources/misc/old/v0.2-code/old/crossmap_api.py",670   "sha256": "cf14b181842555e78ecd2a2757ba1ecac98d3290c9b1b7e145631b43d1999ed6",671   "language": "Python",672   "lines": 273,673   "truncated": false,674   "block": 7,675   "row": 2830676  },677  {678   "path": "resources/misc/old/v0.2-code/old/gtex_xml_writer.py",679   "sha256": "1c33b4acbfe439914153c74a637912cf2ba5b1ff1fed7f066c965f492ed7fe92",680   "language": "Python",681   "lines": 281,682   "truncated": false,683   "block": 7,684   "row": 2002685  },686  {687   "path": "resources/misc/old/v0.2-code/old/readers.py",688   "sha256": "2819189283bb23bc4e0d6c3173622343b67c2b76b1a356bb95bffca2096ca74b",689   "language": "Python",690   "lines": 746,691   "truncated": false,692   "block": 7,693   "row": 9798694  },695  {696   "path": "resources/misc/old/v0.2-code/processors.py",697   "sha256": "93a95c095a0b70b32f30efd129953b41f43a0ca933a647e3112bab1cff1910ff",698   "language": "Python",699   "lines": 1436,700   "truncated": false,701   "block": 8,702   "row": 414703  },704  {705   "path": "resources/misc/old/v0.2-code/sort.py",706   "sha256": "90d1df45a6a9c7fff6f176d477eaab96ea34c8a1c636c15c62f9b87c0e67013e",707   "language": "Python",708   "lines": 676,709   "truncated": false,710   "block": 7,711   "row": 9408712  },713  {714   "path": "resources/misc/old/v0.2-code/utils/extract_pvalue.py",715   "sha256": "64ff2ee558f54fbafd8e24ee4e5ead81100c65568a22563666842f6045faf9bf",716   "language": "Python",717   "lines": 334,718   "truncated": false,719   "block": 7,720   "row": 4110721  },722  {723   "path": "resources/misc/old/v0.2-code/utils/genome_chunks.py",724   "sha256": "471042d0f3e21339cb50ed40fe2d908d6aea905121cec0c00f3834e50332bb1e",725   "language": "Python",726   "lines": 748,727   "truncated": false,728   "block": 7,729   "row": 9974730  },731  {732   "path": "resources/misc/old/v0.2-code/utils/make_extract_pvalue_job_array.py",733   "sha256": "be93eede5a3ceb54a362a28a777de7b95aee845f64e57be0c0a6fe88d7b3f8f8",734   "language": "Python",735   "lines": 133,736   "truncated": false,737   "block": 6,738   "row": 40536739  },740  {741   "path": "resources/misc/old/v0.2-code/utils/quick_lift.py",742   "sha256": "cf477c1429a5509e0bd37ce865f696554335df41770189889ea994f9946f8664",743   "language": "Python",744   "lines": 343,745   "truncated": false,746   "block": 7,747   "row": 4045748  },749  {750   "path": "resources/misc/old/v0.2-code/utils/upgrade_norm.py",751   "sha256": "71ad7cd717c45cf89c41d6d8a4e27c095248f52eac6e98b48cd116ff5c781cfa",752   "language": "Python",753   "lines": 1658,754   "truncated": false,755   "block": 8,756   "row": 510757  },758  {759   "path": "resources/misc/old/v0.2-code/utils/upgrade_top_hits.py",760   "sha256": "1d574b8b709eb4fed393221dfe54f9613acadce467395efe2c46154038d7efc2",761   "language": "Python",762   "lines": 1745,763   "truncated": false,764   "block": 8,765   "row": 622766  },767  {768   "path": "resources/misc/test-norm-structure.py",769   "sha256": "1e555dfb577579f1d63fdf05d485b429de5fb02fa2008f0371efa2b47b87508f",770   "language": "Python",771   "lines": 32,772   "truncated": false,773   "block": 6,774   "row": 24762775  },776  {777   "path": "resources/misc/test_decompress.py",778   "sha256": "277ec1cffe438c58cec69ee180620bfd9cf6c7a9e81854dd1525d08a7062bd8d",779   "language": "Python",780   "lines": 16,781   "truncated": false,782   "block": 6,783   "row": 22388784  },785  {786   "path": "resources/misc/test_variants/create_test_mapper.py",787   "sha256": "a0c2f346b2c8e52256672a00e566583cb04616a459854ff7b0c9815c04e6d575",788   "language": "Python",789   "lines": 44,790   "truncated": false,791   "block": 6,792   "row": 27870793  },794  {795   "path": "resources/misc/test_variants/ensembl-cmd-line.sh",796   "sha256": "4cbc5cd1b8cc0be4f09cddf9ebee2a1efcde8aed9900d02262fb53a5934fa4a5",797   "language": "Shell",798   "lines": 24,799   "truncated": false,800   "block": 8,801   "row": 7735802  },803  {804   "path": "resources/misc/test_variants/other-impute.sh",805   "sha256": "673ff944d3bf3a888b071730af958424986a9017148e9b9b5634c82332824edc",806   "language": "Shell",807   "lines": 41,808   "truncated": false,809   "block": 8,810   "row": 8262811  },812  {813   "path": "resources/misc/test_variants/scan-cmd-line.sh",814   "sha256": "882ee9e58c61fdc03a9efb1ea5a9931dde2cb125c59c358cb66ee564a6e79409",815   "language": "Shell",816   "lines": 40,817   "truncated": false,818   "block": 8,819   "row": 8276820  },821  {822   "path": "resources/misc/test_variants/scan-suhre.sh",823   "sha256": "8cb80b8f23ea80d2d5de2fae69261f0c549c8fadda712cd592173983fa2a4199",824   "language": "Shell",825   "lines": 41,826   "truncated": false,827   "block": 8,828   "row": 8317829  },830  {831   "path": "resources/misc/test_variants/tabix-cmd-line.sh",832   "sha256": "c159b662067ae71a760afe981ab5ba45148c6cfcda056607821d0c86d2abbb11",833   "language": "Shell",834   "lines": 42,835   "truncated": false,836   "block": 8,837   "row": 8263838  },839  {840   "path": "resources/misc/test_variants/test_mapper.py",841   "sha256": "3433401be931aeb2766e2cfce64124fb76108a8c792250b953eeccdf63ffaf8b",842   "language": "Python",843   "lines": 33,844   "truncated": false,845   "block": 6,846   "row": 24507847  },848  {849   "path": "resources/misc/update-xml-cohorts.py",850   "sha256": "4636f61d99461bc5d7cca4d2d9e629dc2512fcb2ff2e51ece71719cbff5e75b2",851   "language": "Python",852   "lines": 528,853   "truncated": false,854   "block": 7,855   "row": 7546856  },857  {858   "path": "resources/misc/update-xmls.py",859   "sha256": "88450d0ba42d1af7d7e364c99b439704f83638eec9473030a1782a85e0e6c5a6",860   "language": "Python",861   "lines": 789,862   "truncated": false,863   "block": 7,864   "row": 9638865  },866  {867   "path": "resources/tasks/gwas-norm.task.sh",868   "sha256": "fb3817501115ed4f19b8879381b10fd4146958f49e113f2ca8aadc5f64a3e6b9",869   "language": "Shell",870   "lines": 196,871   "truncated": false,872   "block": 8,873   "row": 9162874  },875  {876   "path": "tests/conftest.py",877   "sha256": "6b32de05f1f32b1a8f503c7874da9fc8621e2930c900f0bccc1a05ffd056b7fd",878   "language": "Python",879   "lines": 491,880   "truncated": false,881   "block": 7,882   "row": 6558883  },884  {885   "path": "tests/data/dummy_master/rename.sh",886   "sha256": "d9e2f53a8c104ca6b553b140bdd6fa3d79ff37259286a6b7291473cee9a94abe",887   "language": "Shell",888   "lines": 5,889   "truncated": false,890   "block": 8,891   "row": 6651892  },893  {894   "path": "tests/data/ref_genome_tests/old/ref_vcf_setup.sh",895   "sha256": "11f549a0475cab601a9e68e720ac75bf27091402f6211c3e8406654bb38638b2",896   "language": "Shell",897   "lines": 102,898   "truncated": false,899   "block": 8,900   "row": 9012901  },902  {903   "path": "tests/data/ref_genome_tests/ref_vcf_setup.sh",904   "sha256": "9f5d0763c5aaf0cf25e3090961fe1e2478d5aa6e2cf7c867a2e20d48b9e90df0",905   "language": "Shell",906   "lines": 177,907   "truncated": false,908   "block": 8,909   "row": 9229910  },911  {912   "path": "tests/metadata/conftest.py",913   "sha256": "3d93340b69c2d1fa0dd5dcd8467d7bf0ebf981960534363859f0000fd0dc6f17",914   "language": "Python",915   "lines": 193,916   "truncated": false,917   "block": 6,918   "row": 44351919  },920  {921   "path": "tests/metadata/test_analysis.py",922   "sha256": "a3d0ad1ea62098b3f4535c42e3da8226514266d82febe215f11ed5a32a8595aa",923   "language": "Python",924   "lines": 417,925   "truncated": false,926   "block": 7,927   "row": 7830928  },929  {930   "path": "tests/metadata/test_base.py",931   "sha256": "c8efc8a28c92855308640cf218d4a479ff3e0bbb7cedc4168b759dabc861f3c1",932   "language": "Python",933   "lines": 53,934   "truncated": false,935   "block": 6,936   "row": 31424937  },938  {939   "path": "tests/metadata/test_cohort.py",940   "sha256": "e4934ea28aa0238c09820e78900678c1a7da53327d03f7e2d5be1f8d35c2fad9",941   "language": "Python",942   "lines": 539,943   "truncated": false,944   "block": 7,945   "row": 8592946  },947  {948   "path": "tests/metadata/test_column.py",949   "sha256": "cefaa1a2063c9f3ea69621facdd5094b71006db5e7083c1f8bc091e3e3bb7b7e",950   "language": "Python",951   "lines": 112,952   "truncated": false,953   "block": 6,954   "row": 38292955  },956  {957   "path": "tests/metadata/test_convert.py",958   "sha256": "42220ab9fe3d72e16d6c0d3c7394553ff3e3e3bbcbd4fa1d70bf5c9392f3a113",959   "language": "Python",960   "lines": 111,961   "truncated": false,962   "block": 6,963   "row": 37355964  },965  {966   "path": "tests/metadata/test_file.py",967   "sha256": "473bf7a4ad64e40ac27d67e29aacf414ebc49aa5b30a8d0ade43262de18f5f3e",968   "language": "Python",969   "lines": 453,970   "truncated": false,971   "block": 7,972   "row": 7869973  },974  {975   "path": "tests/metadata/test_gwas_data.py",976   "sha256": "75b638e3bb0dc1494e07946c27cd62b7933c64e6681e766e2f88b78962a7e5d0",977   "language": "Python",978   "lines": 97,979   "truncated": false,980   "block": 6,981   "row": 36327982  },983  {984   "path": "tests/metadata/test_metadata_info.py",985   "sha256": "644a028186549e1151cbaeb7c8af437dcb2d652646853826a8131f7bdb235bdc",986   "language": "Python",987   "lines": 86,988   "truncated": false,989   "block": 6,990   "row": 34370991  },992  {993   "path": "tests/metadata/test_phenotypes.py",994   "sha256": "c375aafce9db1b54dfc4672ec9df97cf50ce4d4fb83ad8686d59fc21a3e58ad3",995   "language": "Python",996   "lines": 159,997   "truncated": false,998   "block": 6,999   "row": 420761000  },1001  {1002   "path": "tests/metadata/test_study.py",1003   "sha256": "6928fdbd4f36045bdef674015735af3f14393c6e396c7c7bd1ead92db9eb1183",1004   "language": "Python",1005   "lines": 826,1006   "truncated": false,1007   "block": 7,1008   "row": 116591009  },1010  {1011   "path": "tests/metadata/test_test.py",1012   "sha256": "3ad3a0504afacbcf7fa631a83bc2f4dcc168c62a33b4d7f6b04d8827bc8637a1",1013   "language": "Python",1014   "lines": 562,1015   "truncated": false,1016   "block": 7,1017   "row": 82811018  },1019  {1020   "path": "tests/test_columns.py",1021   "sha256": "ad5b4db0224b6ce4b44692f87be16c45ab744c30e14bcf6962bc0c6e0bfd50b3",1022   "language": "Python",1023   "lines": 342,1024   "truncated": false,1025   "block": 7,1026   "row": 36831027  },1028  {1029   "path": "tests/test_controllers.py",1030   "sha256": "4d74e26207901bb0c84d29943a9563dcb93a23443186bae12db1411036c3ab12",1031   "language": "Python",1032   "lines": 600,1033   "truncated": false,1034   "block": 7,1035   "row": 93231036  },1037  {1038   "path": "tests/test_crossmap.py",1039   "sha256": "0c7811450defadf5956bb7159802f175092d8b863851cec1df15eec15e90a349",1040   "language": "Python",1041   "lines": 140,1042   "truncated": false,1043   "block": 6,1044   "row": 429001045  },1046  {1047   "path": "tests/test_gwas_norm.py",1048   "sha256": "0cbdc20cafb3cf9f7bf0007ad2db131e7ddf787f0d644a63109dcf36996ffef7",1049   "language": "Python",1050   "lines": 504,1051   "truncated": false,1052   "block": 7,1053   "row": 78411054  },1055  {1056   "path": "tests/test_info_columns_without_info_element.py",1057   "sha256": "9957302f18916aed0de68c03c2c05889d5bb59c93ba9789f881279a21c92c92a",1058   "language": "Python",1059   "lines": 185,1060   "truncated": false,1061   "block": 6,1062   "row": 433141063  },1064  {1065   "path": "tests/test_info_handlers.py",1066   "sha256": "d3abc5e0acbf42cec693ceecf088ebee6ba7ee8b70b923da7a41ea13ff1b6370",1067   "language": "Python",1068   "lines": 220,1069   "truncated": false,1070   "block": 7,1071   "row": 661072  },1073  {1074   "path": "tests/test_merge_log_index_error.py",1075   "sha256": "3e84d90fc40c077ef8d07fdbfd6958c9a43fb8090e7472c7ad4d3068f7c159e9",1076   "language": "Python",1077   "lines": 176,1078   "truncated": false,1079   "block": 6,1080   "row": 436971081  },1082  {1083   "path": "tests/test_normalise.py",1084   "sha256": "f11a4ff6f794cccf954a55478a69f4c687a3ed654adfe33172b3890f2bae1bc4",1085   "language": "Python",1086   "lines": 1190,1087   "truncated": false,1088   "block": 7,1089   "row": 117681090  },1091  {1092   "path": "tests/test_parsers.py",1093   "sha256": "b767a2125e4fb45c75885132ae1658baafde8404b8016022c2a1be034f7e0833",1094   "language": "Python",1095   "lines": 655,1096   "truncated": false,1097   "block": 7,1098   "row": 89681099  },1100  {1101   "path": "tests/test_safe_writerow.py",1102   "sha256": "f8a269f3cdc3980f78b4b19317bdfc3783d672914d2b64e7bc96c56d67ff3069",1103   "language": "Python",1104   "lines": 160,1105   "truncated": false,1106   "block": 6,1107   "row": 428221108  },1109  {1110   "path": "tests/test_stats.py",1111   "sha256": "645b0377c274058ca486b3c2e2c31314856172c485c84a5da50c4caa574ac795",1112   "language": "Python",1113   "lines": 122,1114   "truncated": false,1115   "block": 6,1116   "row": 389241117  },1118  {1119   "path": "tests/test_target_genome_assembly_normalise.py",1120   "sha256": "6bb2134cf0f6391eb6cbcc55533b19ea5999925790e76faee9e7a3087d7ac899",1121   "language": "Python",1122   "lines": 110,1123   "truncated": false,1124   "block": 6,1125   "row": 372351126  },1127  {1128   "path": "tests/test_test_data.py",1129   "sha256": "f1f92f69f0fdb4136b28c6327269bd7f2b4e68128d36d38a9b7fefc12303ac24",1130   "language": "Python",1131   "lines": 431,1132   "truncated": false,1133   "block": 7,1134   "row": 60871135  }1136 ]1137}