Datasetpublic
OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
rootmanifestsb8github.com__diseasetranscriptomicslab__scstudio.json
github.com__diseasetranscriptomicslab__scstudio.json660 linesDownload Raw Back to b8
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/diseasetranscriptomicslab/scstudio",4 "url": "https://github.com/DiseaseTranscriptomicsLab/scStudio",5 "host": "github.com",6 "commit": "8557469b04cd4e20b95fd54c3b52987ed353bee8",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",14   "language": "License",15   "lines": 674,16   "truncated": false,17   "block": 1,18   "row": 223519  },20  {21   "path": "README.md",22   "sha256": "01cf693324e0f35af59908a98582a240de198af2bc60a9d8ce0ba60b15d8bbfc",23   "language": "Text",24   "lines": 183,25   "truncated": false,26   "block": 13,27   "row": 694528  },29  {30   "path": "clustering/app.R",31   "sha256": "37e40fc2cd719be6f79252cbc744d75cc4a518aa0b3901b90d4da872bcb19875",32   "language": "R",33   "lines": 974,34   "truncated": false,35   "block": 13,36   "row": 331037  },38  {39   "path": "clustering/setup.R",40   "sha256": "e7d4f3449022f793f548728c6ebd906e3eeaa7c03bfdcde00bd97f84d882b24f",41   "language": "R",42   "lines": 70,43   "truncated": false,44   "block": 13,45   "row": 150746  },47  {48   "path": "clustering/tab_SEURAT/UI.R",49   "sha256": "57935bfa849d87602997e0a1299570f8e6929ad3eaad7070f8d35d64c32967d2",50   "language": "R",51   "lines": 178,52   "truncated": false,53   "block": 13,54   "row": 209655  },56  {57   "path": "clustering/tab_SEURAT/server.R",58   "sha256": "4f8bf41e2c8963a722d9ceae7880a6cb1c9bc54ceba0e1acd7659a23211cac46",59   "language": "R",60   "lines": 242,61   "truncated": false,62   "block": 13,63   "row": 251764  },65  {66   "path": "dea/app.R",67   "sha256": "423648ef4ba715f0f1578983e0d0066faad8884886517f80985bd332f4fb114e",68   "language": "R",69   "lines": 856,70   "truncated": false,71   "block": 13,72   "row": 326873  },74  {75   "path": "dea/setup.R",76   "sha256": "e7d4f3449022f793f548728c6ebd906e3eeaa7c03bfdcde00bd97f84d882b24f",77   "language": "R",78   "lines": 70,79   "truncated": false,80   "block": 13,81   "row": 150782  },83  {84   "path": "dea/tab_DEA/UI.R",85   "sha256": "3821bf5f85150fee811b1402c68364d190815d64d826058c68b64f109f4398f7",86   "language": "R",87   "lines": 187,88   "truncated": false,89   "block": 13,90   "row": 216991  },92  {93   "path": "dea/tab_DEA/server.R",94   "sha256": "c4953f0887f4fbd6391694e22bd8a79072e3d288c66921f9a840e3eb1710cfa4",95   "language": "R",96   "lines": 552,97   "truncated": false,98   "block": 13,99   "row": 2982100  },101  {102   "path": "dimred/app.R",103   "sha256": "17263d836833e0b7187e05b9497f6cabf76b37abb1655650ad7ea0dfa7096adb",104   "language": "R",105   "lines": 1084,106   "truncated": false,107   "block": 13,108   "row": 3363109  },110  {111   "path": "dimred/setup.R",112   "sha256": "e7d4f3449022f793f548728c6ebd906e3eeaa7c03bfdcde00bd97f84d882b24f",113   "language": "R",114   "lines": 70,115   "truncated": false,116   "block": 13,117   "row": 1507118  },119  {120   "path": "dimred/tab_FEATURE_SELECTION/UI.R",121   "sha256": "89d5f546fafcbf4d2c5aa0c459ef29c4745265ac88835556128390b1766e1bd6",122   "language": "R",123   "lines": 83,124   "truncated": false,125   "block": 13,126   "row": 1649127  },128  {129   "path": "dimred/tab_FEATURE_SELECTION/server.R",130   "sha256": "a0e1345bd83d081d27466a3c931f92460a6aaaad21ec8be9f135031ab1cb6ba0",131   "language": "R",132   "lines": 63,133   "truncated": false,134   "block": 13,135   "row": 1369136  },137  {138   "path": "dimred/tab_PCA/UI.R",139   "sha256": "927f28d4f29e82e716ac8c5abb7b0094c6959240de99f3607fb24c846d3969de",140   "language": "R",141   "lines": 120,142   "truncated": false,143   "block": 13,144   "row": 1970145  },146  {147   "path": "dimred/tab_PCA/server.R",148   "sha256": "7f163a33b4377144a1291a4216691d1f4a113368d895094dfeb2fd4c2f4b0504",149   "language": "R",150   "lines": 85,151   "truncated": false,152   "block": 13,153   "row": 1552154  },155  {156   "path": "dimred/tab_TSNE/UI.R",157   "sha256": "cee03f149d0632c23d130313eaa67540cae7cf507eeeb7bdd3212e753d34bd7d",158   "language": "R",159   "lines": 135,160   "truncated": false,161   "block": 13,162   "row": 2098163  },164  {165   "path": "dimred/tab_TSNE/server.R",166   "sha256": "62ce2b673a40c5f9ecac4072ba6c8b27df2499b7fc3f710581ba2dd5cb6d0773",167   "language": "R",168   "lines": 23,169   "truncated": false,170   "block": 13,171   "row": 890172  },173  {174   "path": "dimred/tab_UMAP/UI.R",175   "sha256": "709c0624ad4c0ef851e67edfe270e09164730ffa36afa1d07ff5561fb1eb22ee",176   "language": "R",177   "lines": 146,178   "truncated": false,179   "block": 13,180   "row": 2233181  },182  {183   "path": "dimred/tab_UMAP/server.R",184   "sha256": "917116b9c85cde1d20443d3daa07fbbb883ba806ab2467d7f8408935a1d3b163",185   "language": "R",186   "lines": 21,187   "truncated": false,188   "block": 13,189   "row": 924190  },191  {192   "path": "fea/app.R",193   "sha256": "bfe9be12ee9dba953d52f56197675e4b6dd9c9cd7d55ef46076881989edd1743",194   "language": "R",195   "lines": 903,196   "truncated": false,197   "block": 13,198   "row": 3283199  },200  {201   "path": "fea/setup.R",202   "sha256": "e7d4f3449022f793f548728c6ebd906e3eeaa7c03bfdcde00bd97f84d882b24f",203   "language": "R",204   "lines": 70,205   "truncated": false,206   "block": 13,207   "row": 1507208  },209  {210   "path": "fea/tab_GSEA/UI.R",211   "sha256": "2e0cf6c56b45d6db93eaa64fb6523cf40d4c600f1deede56c6f94be07b2f92eb",212   "language": "R",213   "lines": 187,214   "truncated": false,215   "block": 13,216   "row": 2234217  },218  {219   "path": "fea/tab_GSEA/server.R",220   "sha256": "29aa7de12f3cc0a46ab7360d11985db94d3fa42c5e32a774abfe29d522eac427",221   "language": "R",222   "lines": 72,223   "truncated": false,224   "block": 13,225   "row": 1447226  },227  {228   "path": "fea/tab_PSEUDO/UI.R",229   "sha256": "72372143ff8bcf78062d87dc35c0a2aea75719b0597894e62cb81be88a33a0e3",230   "language": "R",231   "lines": 128,232   "truncated": false,233   "block": 13,234   "row": 2208235  },236  {237   "path": "fea/tab_PSEUDO/server.R",238   "sha256": "e89ad98a7272789794ba30a624e2debfc678ef83f0dd3e837376f8a1cfe6f39a",239   "language": "R",240   "lines": 150,241   "truncated": false,242   "block": 13,243   "row": 1997244  },245  {246   "path": "fea/tab_SCORES/UI.R",247   "sha256": "3eb9f0bd66104d7e2b4baac7adeb4f77944933330faab63957b43ab2fb0144fc",248   "language": "R",249   "lines": 195,250   "truncated": false,251   "block": 13,252   "row": 2368253  },254  {255   "path": "fea/tab_SCORES/server.R",256   "sha256": "56dd0b930373951515d201838f3e9efcacd23adbac1924c822850d1f807d1ade",257   "language": "R",258   "lines": 154,259   "truncated": false,260   "block": 13,261   "row": 1955262  },263  {264   "path": "feature-plots/app.R",265   "sha256": "5398cafcfd2fa69e57ba4cf47d2d33d2905f5ad0543c4a68784f541e9a1766d0",266   "language": "R",267   "lines": 644,268   "truncated": false,269   "block": 13,270   "row": 3175271  },272  {273   "path": "feature-plots/setup.R",274   "sha256": "e7d4f3449022f793f548728c6ebd906e3eeaa7c03bfdcde00bd97f84d882b24f",275   "language": "R",276   "lines": 70,277   "truncated": false,278   "block": 13,279   "row": 1507280  },281  {282   "path": "feature-plots/tab_DIMRED/UI.R",283   "sha256": "79af3cf090d043c10f3672fba586a0ee9a1f84b81f069fb534c2b52795c83ced",284   "language": "R",285   "lines": 105,286   "truncated": false,287   "block": 13,288   "row": 1915289  },290  {291   "path": "feature-plots/tab_DIMRED/server.R",292   "sha256": "a11eadac26d3a2db34a2829c709c7e2ff2ac39be2a72b6183281bdb172c8ead2",293   "language": "R",294   "lines": 53,295   "truncated": false,296   "block": 13,297   "row": 1274298  },299  {300   "path": "feature-plots/tab_DOTPLOTS/UI.R",301   "sha256": "d7769f2ca77c42a9a90c7a244b53bbcbede0dd012177d202dc10e96a9d436519",302   "language": "R",303   "lines": 97,304   "truncated": false,305   "block": 13,306   "row": 1847307  },308  {309   "path": "feature-plots/tab_DOTPLOTS/server.R",310   "sha256": "d532428273829df3eeeb2ee22fa8edeb249def2a8f92029263cf835f6348d4ca",311   "language": "R",312   "lines": 124,313   "truncated": false,314   "block": 13,315   "row": 1834316  },317  {318   "path": "feature-plots/tab_VIOLINS/UI.R",319   "sha256": "0406d550a2b0b0148863e46dc989b49b23ee615152a66676be319c9a21554023",320   "language": "R",321   "lines": 98,322   "truncated": false,323   "block": 13,324   "row": 1819325  },326  {327   "path": "feature-plots/tab_VIOLINS/server.R",328   "sha256": "c181395c854d351689bed17067f802c7bc733810d6a69f484afed04b934f37ac",329   "language": "R",330   "lines": 106,331   "truncated": false,332   "block": 13,333   "row": 1775334  },335  {336   "path": "home/UI.R",337   "sha256": "575f64f4523055173bbfb79d69790478d2e09bbef647fc33a9ea7de9525e734a",338   "language": "R",339   "lines": 20,340   "truncated": false,341   "block": 13,342   "row": 884343  },344  {345   "path": "home/app.R",346   "sha256": "3b0cf232053168cafc8924ca4dd0a276da1ce8c14d6614e0e42dc240f2fc353b",347   "language": "R",348   "lines": 48,349   "truncated": false,350   "block": 13,351   "row": 982352  },353  {354   "path": "normalization/app.R",355   "sha256": "711dec09360f0428d2e23d1081971af6454496ecffcf5fd8795aac952b5e2383",356   "language": "R",357   "lines": 615,358   "truncated": false,359   "block": 13,360   "row": 3166361  },362  {363   "path": "normalization/setup.R",364   "sha256": "87484c5ae5398f836e7ba1edd5a0071b2f7bfa58d9b3cacf576de7e08b5f5424",365   "language": "R",366   "lines": 79,367   "truncated": false,368   "block": 13,369   "row": 1501370  },371  {372   "path": "normalization/tab_BEC/UI.R",373   "sha256": "244db2ccc70527ae2d0616e0292d4193059cc92890fc595abdea39784d537cde",374   "language": "R",375   "lines": 77,376   "truncated": false,377   "block": 13,378   "row": 1571379  },380  {381   "path": "normalization/tab_BEC/server.R",382   "sha256": "a8f1ec6395f492d5b389ce05c6d7e511014d7b1569dd814103095bacc3597d79",383   "language": "R",384   "lines": 48,385   "truncated": false,386   "block": 13,387   "row": 1166388  },389  {390   "path": "normalization/tab_DEPTH/UI.R",391   "sha256": "1260d8251a62d4e14c6414776208a8c43dfaf8dd8abce776170cc2d729d1d785",392   "language": "R",393   "lines": 66,394   "truncated": false,395   "block": 13,396   "row": 1380397  },398  {399   "path": "normalization/tab_DEPTH/server.R",400   "sha256": "c693c8afbd78edc3f03880d0d610a9484640748786d085818fba1975e81ebcf9",401   "language": "R",402   "lines": 83,403   "truncated": false,404   "block": 13,405   "row": 1472406  },407  {408   "path": "normalization/tab_VAREXPLAINED/UI.R",409   "sha256": "faba9ecc081f36885490713b7386604a710ac3d726d7cb6ae3d9f88a8291c1e8",410   "language": "R",411   "lines": 43,412   "truncated": false,413   "block": 13,414   "row": 1156415  },416  {417   "path": "normalization/tab_VAREXPLAINED/server.R",418   "sha256": "09e2f346690756e26f3c3da485737120656fb2e9c2da728625c1a1f87a4b3f76",419   "language": "R",420   "lines": 31,421   "truncated": false,422   "block": 13,423   "row": 956424  },425  {426   "path": "qc/app.R",427   "sha256": "4ff7301b00766f7e7f6d58a2153f1868b97f9261be2bebfcdd72fcb5c4418c79",428   "language": "R",429   "lines": 1118,430   "truncated": false,431   "block": 13,432   "row": 3368433  },434  {435   "path": "qc/setup.R",436   "sha256": "44a2de443b639c36ddfd1d2b74147b4005cec136500bb953388bb52a9e69b4db",437   "language": "R",438   "lines": 55,439   "truncated": false,440   "block": 13,441   "row": 1400442  },443  {444   "path": "qc/tab_QC_BARPLOTS/UI.R",445   "sha256": "831610efc35082ac311dbabe094b0a6e6f12d71455dce768c772f6716eee0a13",446   "language": "R",447   "lines": 44,448   "truncated": false,449   "block": 13,450   "row": 1231451  },452  {453   "path": "qc/tab_QC_BARPLOTS/server.R",454   "sha256": "3f03bf7603619a6fba1143018cb9a59d8f6dbfdd2911ca202f7ce56cc9647e78",455   "language": "R",456   "lines": 49,457   "truncated": false,458   "block": 13,459   "row": 1208460  },461  {462   "path": "qc/tab_QC_CELLS/UI.R",463   "sha256": "b5805dae57e4db9684daeae54ae72a64e0095f7feb6af0229b02b4f7df97a508",464   "language": "R",465   "lines": 123,466   "truncated": false,467   "block": 13,468   "row": 1857469  },470  {471   "path": "qc/tab_QC_CELLS/server.R",472   "sha256": "023d413fbd47405ae63f7c43a30ced76c4a850b9323574ab110dccb3abd6e846",473   "language": "R",474   "lines": 181,475   "truncated": false,476   "block": 13,477   "row": 2291478  },479  {480   "path": "qc/tab_QC_DOUBLETS/UI.R",481   "sha256": "3cdcb8fe4685caf1eec0ed908f3c82b916ac1b51804c5ddd6924322af4d60263",482   "language": "R",483   "lines": 47,484   "truncated": false,485   "block": 13,486   "row": 1278487  },488  {489   "path": "qc/tab_QC_DOUBLETS/server.R",490   "sha256": "c2a2bd9bcc14bd16eef76af7a8fa9ba97baed272ba1a2fffd63fee536545fca4",491   "language": "R",492   "lines": 96,493   "truncated": false,494   "block": 13,495   "row": 1641496  },497  {498   "path": "qc/tab_QC_GENES/UI.R",499   "sha256": "9f3f84d12cf9e0b089a9b8124e900bf3b3d1574f73966e1ef07b446ee42ab359",500   "language": "R",501   "lines": 51,502   "truncated": false,503   "block": 13,504   "row": 1395505  },506  {507   "path": "qc/tab_QC_GENES/server.R",508   "sha256": "e9e89ebe967de69dc6d2d799dd52ee7c72c812e582f9bf264bc6bbdf5ffa1726",509   "language": "R",510   "lines": 162,511   "truncated": false,512   "block": 13,513   "row": 2052514  },515  {516   "path": "report/app.R",517   "sha256": "29f68517710cd6163f995c13b6104d5034e6afe78565356698cfdd11dc171e7a",518   "language": "R",519   "lines": 424,520   "truncated": false,521   "block": 13,522   "row": 2951523  },524  {525   "path": "report/setup.R",526   "sha256": "e7d4f3449022f793f548728c6ebd906e3eeaa7c03bfdcde00bd97f84d882b24f",527   "language": "R",528   "lines": 70,529   "truncated": false,530   "block": 13,531   "row": 1507532  },533  {534   "path": "report/tab_REPORT/UI.R",535   "sha256": "431f042ee62c0b5856ad45343ad103742278c7b0204fbc46c14cbaa84661bd8f",536   "language": "R",537   "lines": 33,538   "truncated": false,539   "block": 13,540   "row": 1162541  },542  {543   "path": "report/tab_SESSIONINFO/UI.R",544   "sha256": "3dc77c59aed36c6bf8ca41b764cbb97b5e8da9b038fcf0598203bc89f0a41623",545   "language": "R",546   "lines": 29,547   "truncated": false,548   "block": 13,549   "row": 950550  },551  {552   "path": "select-data/app.R",553   "sha256": "7455244e3360ab6e43fff7e46119dfddb5143e17cdacb7e09d5100eea4267a2b",554   "language": "R",555   "lines": 999,556   "truncated": false,557   "block": 13,558   "row": 3317559  },560  {561   "path": "select-data/setup.R",562   "sha256": "01561cdef47d801f10fba99f60c555a32dd30527607e9f4beacd6da6a8dc233b",563   "language": "R",564   "lines": 54,565   "truncated": false,566   "block": 13,567   "row": 1204568  },569  {570   "path": "select-data/tab_SELECTDATA/UI.R",571   "sha256": "f888531fedfb99edbb82d3656e157da0c00dbe7ac9e6f30764d12324cbde3420",572   "language": "R",573   "lines": 114,574   "truncated": false,575   "block": 13,576   "row": 1975577  },578  {579   "path": "select-data/tab_SELECTDATA/server.R",580   "sha256": "5d76196a03098c0dd36775744f2393260a377f1e0664cbf60d512d28f884afff",581   "language": "R",582   "lines": 831,583   "truncated": false,584   "block": 13,585   "row": 3266586  },587  {588   "path": "settings/app.R",589   "sha256": "df5ae9c8f1af8af3d1077ada95e275554b12c26151ab698121728cdba14cd334",590   "language": "R",591   "lines": 789,592   "truncated": false,593   "block": 13,594   "row": 3254595  },596  {597   "path": "settings/setup.R",598   "sha256": "e7d4f3449022f793f548728c6ebd906e3eeaa7c03bfdcde00bd97f84d882b24f",599   "language": "R",600   "lines": 70,601   "truncated": false,602   "block": 13,603   "row": 1507604  },605  {606   "path": "settings/tab_COLOURS/UI.R",607   "sha256": "ee9fbb6983a7805febf6f782086789c961cb058795945ab763ca352fa45fa046",608   "language": "R",609   "lines": 42,610   "truncated": false,611   "block": 13,612   "row": 1138613  },614  {615   "path": "settings/tab_COLOURS/server.R",616   "sha256": "138ab5de5859043abcc6016db37f5bbe52986ee7a4e591610e9b49eb5b11ca8b",617   "language": "R",618   "lines": 49,619   "truncated": false,620   "block": 13,621   "row": 1167622  },623  {624   "path": "settings/tab_METADATA/UI.R",625   "sha256": "b5008457a7b8bc910ba3fc22955960e834df46e4ceecd99564d37e3b99d13949",626   "language": "R",627   "lines": 60,628   "truncated": false,629   "block": 13,630   "row": 1446631  },632  {633   "path": "settings/tab_METADATA/server.R",634   "sha256": "e45da1adf6e25b2fcaa8177d53cbcaade9f452da38accf5853e1ae65c829ab7b",635   "language": "R",636   "lines": 17,637   "truncated": false,638   "block": 13,639   "row": 815640  },641  {642   "path": "settings/tab_SUBSET/UI.R",643   "sha256": "484dfbfb44da764e631ad8ed02c1153188462c9552a812698cb9583fef00fe49",644   "language": "R",645   "lines": 54,646   "truncated": false,647   "block": 13,648   "row": 1430649  },650  {651   "path": "settings/tab_SUBSET/server.R",652   "sha256": "2ea0ce17c4ebe7d9f2d5f1af804085f725b00d2f14231c87629a141b9397a84e",653   "language": "R",654   "lines": 96,655   "truncated": false,656   "block": 13,657   "row": 1480658  }659 ]660}