Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__jvzonlab__organoidtracker.json2766 linesDownload Raw Back to b9
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/jvzonlab/organoidtracker",4 "url": "https://github.com/jvzonlab/OrganoidTracker",5 "host": "github.com",6 "commit": "9c4041bd4c1d8d68a2504ccdc5683b0ea2d179fb",7 "license": "GPL-2.0",8 "license_confirmed_by": "license file LICENSE.txt",9 "redistribution": "yes",10 "files": [11  {12   "path": "Example Jupyter notebook.ipynb",13   "sha256": "a52e7852901c63cce0b3f19bab4fea5d12481f510c8a41288039dbc9dd8f8bda",14   "language": "Jupyter",15   "lines": 91,16   "truncated": false,17   "block": 17,18   "row": 571619  },20  {21   "path": "LICENSE.txt",22   "sha256": "8177f97513213526df2cf6184d8ff986c675afb514d4e68a404010521b880643",23   "language": "License",24   "lines": 339,25   "truncated": false,26   "block": 1,27   "row": 222128  },29  {30   "path": "README.md",31   "sha256": "f629fb0de303cfb859a8092c0c1183080fd48d1960854ffbdaaa350a68405674",32   "language": "Text",33   "lines": 89,34   "truncated": false,35   "block": 18,36   "row": 1092737  },38  {39   "path": "_keras_environment.py",40   "sha256": "171b819c70dae145f867d14c983d37da4431f6e37ec3be2fd99ef4abd473c52c",41   "language": "Python",42   "lines": 39,43   "truncated": false,44   "block": 17,45   "row": 2220946  },47  {48   "path": "conda-recipe/build.sh",49   "sha256": "e5e2da836ed843cc7c1c8e73b9ad763edaf2ea739ea79cd561d6d4392f08b379",50   "language": "Shell",51   "lines": 1,52   "truncated": false,53   "block": 18,54   "row": 857555  },56  {57   "path": "different_validation.py",58   "sha256": "0c0b397cfe028cbbd2efa48cc714c0720de27388634d2b85007fcf4df1e486b3",59   "language": "Python",60   "lines": 181,61   "truncated": false,62   "block": 17,63   "row": 3196164  },65  {66   "path": "manuals/conf.py",67   "sha256": "df0d29b1505fd9cdc9e3f25a0f61eff2e27f20e3e132253c8283bbbc0951bfb2",68   "language": "Python",69   "lines": 70,70   "truncated": false,71   "block": 17,72   "row": 2394973  },74  {75   "path": "organoid_tracker.py",76   "sha256": "ced74d873dd353bdd34735e9476da06b125c72e4211ba73307261a830fb48068",77   "language": "Python",78   "lines": 44,79   "truncated": false,80   "block": 17,81   "row": 2207082  },83  {84   "path": "organoid_tracker/__init__.py",85   "sha256": "843bf095eccf90c97ed917603e15bffd989a37cfb32528e9bd57958cf6f814bb",86   "language": "Python",87   "lines": 11,88   "truncated": false,89   "block": 17,90   "row": 1829191  },92  {93   "path": "organoid_tracker/comparison/__init__.py",94   "sha256": "39654c4366a0d8f6360481f1ffb3b661534d770323e61deabf080eb5d95a4759",95   "language": "Python",96   "lines": 19,97   "truncated": false,98   "block": 17,99   "row": 19541100  },101  {102   "path": "organoid_tracker/comparison/lineage_comparison.py",103   "sha256": "b669f49a3d4df235ee7f8e6cd870db627d4ada324ddf124d9439d676320f228a",104   "language": "Python",105   "lines": 135,106   "truncated": false,107   "block": 17,108   "row": 30994109  },110  {111   "path": "organoid_tracker/comparison/links_comparison.py",112   "sha256": "c9e51f01e34f92948b92ac440c8de137f32099dd886b7aecacf879764ad18fd4",113   "language": "Python",114   "lines": 130,115   "truncated": false,116   "block": 17,117   "row": 30528118  },119  {120   "path": "organoid_tracker/comparison/positions_comparison.py",121   "sha256": "07ead8a876a7cdc6a6191807c0f2f5bc99b954051c888a94305bded68c5da08a",122   "language": "Python",123   "lines": 67,124   "truncated": false,125   "block": 17,126   "row": 26415127  },128  {129   "path": "organoid_tracker/comparison/report.py",130   "sha256": "f1ed7cf9ef9ad9d34644c57da6192b6b7d4cebad55a2d4cf678d788ab84f6a4c",131   "language": "Python",132   "lines": 294,133   "truncated": false,134   "block": 18,135   "row": 1932136  },137  {138   "path": "organoid_tracker/comparison/report_csv_io.py",139   "sha256": "b015baeeed428c07d501e8eb1ace13937cd6ed2cfd5c2202207b78005507c34b",140   "language": "Python",141   "lines": 20,142   "truncated": false,143   "block": 17,144   "row": 19446145  },146  {147   "path": "organoid_tracker/comparison/report_json_io.py",148   "sha256": "e5f330edd94c1c4fb80b363f4eb347056ad0de2acae7d9731225b0814dd1061c",149   "language": "Python",150   "lines": 64,151   "truncated": false,152   "block": 17,153   "row": 24573154  },155  {156   "path": "organoid_tracker/config/__init__.py",157   "sha256": "f5026a97186318a0f266ac84b34ca91b4e95b58e060055f8ecd6cdb0d52ced35",158   "language": "Python",159   "lines": 223,160   "truncated": false,161   "block": 18,162   "row": 128163  },164  {165   "path": "organoid_tracker/connecting/__init__.py",166   "sha256": "f57ac71307817a77fbe447e794c718f33f29f6d0af232a629c8392594073c95f",167   "language": "Python",168   "lines": 18,169   "truncated": false,170   "block": 17,171   "row": 19997172  },173  {174   "path": "organoid_tracker/connecting/connector_by_distance.py",175   "sha256": "6810896c3faa70402328ba20140478a1ae27661c3aaece421ff011055def2b1b",176   "language": "Python",177   "lines": 65,178   "truncated": false,179   "block": 17,180   "row": 24936181  },182  {183   "path": "organoid_tracker/connecting/connector_using_angles.py",184   "sha256": "97bb7c741dcb600cc543cc2fbc97c3dcf09a8dcd9de8dfdb0a764a34343844b7",185   "language": "Python",186   "lines": 75,187   "truncated": false,188   "block": 17,189   "row": 25585190  },191  {192   "path": "organoid_tracker/connection_analysis/__init__.py",193   "sha256": "8ea9234b8ded545cac7ec069c9d659a2d1b34eeb6652147170a6c092abc2e332",194   "language": "Python",195   "lines": 3,196   "truncated": false,197   "block": 17,198   "row": 17336199  },200  {201   "path": "organoid_tracker/connection_analysis/cluster_finder.py",202   "sha256": "73bbd7c57c6294315d23bd2d00e70a3ad791c4594e2dc455a68d78adf8792be2",203   "language": "Python",204   "lines": 74,205   "truncated": false,206   "block": 17,207   "row": 25114208  },209  {210   "path": "organoid_tracker/connection_analysis/connected_position_finder.py",211   "sha256": "56bdc6affec26908e6c8c0b2ba6448b80b7bdc3ebf1b1ebea167c99e999967ac",212   "language": "Python",213   "lines": 50,214   "truncated": false,215   "block": 17,216   "row": 23772217  },218  {219   "path": "organoid_tracker/coordinate_system/__init__.py",220   "sha256": "b1397a1efa23d7007ab20d06876b7856c5cf95b5520b15c640b11401e93c2e5b",221   "language": "Python",222   "lines": 15,223   "truncated": false,224   "block": 17,225   "row": 19733226  },227  {228   "path": "organoid_tracker/coordinate_system/orientation_spline_adder.py",229   "sha256": "5c9133f523bcbee067f352108ba8a178d3c7f643f9cb576eaa788f470c658c54",230   "language": "Python",231   "lines": 72,232   "truncated": false,233   "block": 17,234   "row": 26059235  },236  {237   "path": "organoid_tracker/coordinate_system/sphere_representer.py",238   "sha256": "2f4c1f99ed772ad52913506b1ca3f1b1ea61a61dfb9377dc9efab956846fe478",239   "language": "Python",240   "lines": 319,241   "truncated": false,242   "block": 18,243   "row": 2514244  },245  {246   "path": "organoid_tracker/coordinate_system/spherical_coordinates.py",247   "sha256": "5d37fe99bcd8a043fe6c7c771845e7062697cb9d211168e8303a3caee470baf8",248   "language": "Python",249   "lines": 84,250   "truncated": false,251   "block": 17,252   "row": 25487253  },254  {255   "path": "organoid_tracker/core/__init__.py",256   "sha256": "6086532150b3f6bf9f6d3da101cee23fe7ca6ff1bc8082f6a14ef6492fa1f433",257   "language": "Python",258   "lines": 327,259   "truncated": false,260   "block": 18,261   "row": 1112262  },263  {264   "path": "organoid_tracker/core/beacon_collection.py",265   "sha256": "9a8b6ff13595dd5ae038832ee184bfd644b775245c257003dbd1d85c925a7537",266   "language": "Python",267   "lines": 231,268   "truncated": false,269   "block": 18,270   "row": 108271  },272  {273   "path": "organoid_tracker/core/bounding_box.py",274   "sha256": "1c173b20903271f6b842e64c8fdf068a7825677771d70f3674caf004c04dd374",275   "language": "Python",276   "lines": 45,277   "truncated": false,278   "block": 17,279   "row": 21949280  },281  {282   "path": "organoid_tracker/core/concurrent.py",283   "sha256": "7babe404c48ea40cc0ebfe9b7d5a49dff44652901601409af4514d9fbc7006a5",284   "language": "Python",285   "lines": 39,286   "truncated": false,287   "block": 17,288   "row": 20298289  },290  {291   "path": "organoid_tracker/core/connections.py",292   "sha256": "166ddce4b591bde034477b253e90c512e31a145021856da2f5636869b54d8ba1",293   "language": "Python",294   "lines": 435,295   "truncated": false,296   "block": 18,297   "row": 3525298  },299  {300   "path": "organoid_tracker/core/experiment.py",301   "sha256": "55bf96a7955bf47a8ab2fb9f52f4f720a232e9eeaab4756fa3ddbe4ca306d108",302   "language": "Python",303   "lines": 382,304   "truncated": false,305   "block": 18,306   "row": 3208307  },308  {309   "path": "organoid_tracker/core/full_position_snapshot.py",310   "sha256": "c2f0ec459175d439d8467c67e02531f5df18c67f1bdae6c296932e0d7fae25a7",311   "language": "Python",312   "lines": 44,313   "truncated": false,314   "block": 17,315   "row": 23259316  },317  {318   "path": "organoid_tracker/core/global_data.py",319   "sha256": "12b48c61529872afe89f75e06c08f10f180683f1a4ba73d7fb29ca04cb57ea28",320   "language": "Python",321   "lines": 40,322   "truncated": false,323   "block": 17,324   "row": 21115325  },326  {327   "path": "organoid_tracker/core/image_coloring.py",328   "sha256": "da4522e8584e12b804ed3bf37dcca751e4f9b0f6062266190654322d40dc5efb",329   "language": "Python",330   "lines": 78,331   "truncated": false,332   "block": 17,333   "row": 25390334  },335  {336   "path": "organoid_tracker/core/image_filters.py",337   "sha256": "2f603606a41be6330d3281225a465b6f0616e524bf07c2871ec1d6f53f6fc8bc",338   "language": "Python",339   "lines": 88,340   "truncated": false,341   "block": 17,342   "row": 25722343  },344  {345   "path": "organoid_tracker/core/image_loader.py",346   "sha256": "a8755fd802aa3483ea6fd0b2817a245f863f21fee9833e1d0953a1d7c2523775",347   "language": "Python",348   "lines": 201,349   "truncated": false,350   "block": 17,351   "row": 31456352  },353  {354   "path": "organoid_tracker/core/images.py",355   "sha256": "4c39ccccece8dc5ed289f972ce312f00a38492193cdbe3bc480668a66404a54f",356   "language": "Python",357   "lines": 565,358   "truncated": false,359   "block": 18,360   "row": 4159361  },362  {363   "path": "organoid_tracker/core/link_data.py",364   "sha256": "27d7fc2f770c39a540243afcf7f2940fbe91a8772e08e5fe3d066f67b20c6793",365   "language": "Python",366   "lines": 58,367   "truncated": false,368   "block": 17,369   "row": 24951370  },371  {372   "path": "organoid_tracker/core/links.py",373   "sha256": "e5a8bea3d7a9b3cfd9f144844667d258795f9f2680c009aa331e68af2f8dea07",374   "language": "Python",375   "lines": 1189,376   "truncated": false,377   "block": 18,378   "row": 5554379  },380  {381   "path": "organoid_tracker/core/marker.py",382   "sha256": "5202180ea791a2e764adb30862334ab2eeee4cd3b53546617fc826417d92e3ea",383   "language": "Python",384   "lines": 73,385   "truncated": false,386   "block": 17,387   "row": 24440388  },389  {390   "path": "organoid_tracker/core/mask.py",391   "sha256": "b1b4d2ccbbbf4832b31ef292cd3880c8443b2b89d375c9525bdd9d55cc2a3bcf",392   "language": "Python",393   "lines": 264,394   "truncated": false,395   "block": 18,396   "row": 1311397  },398  {399   "path": "organoid_tracker/core/position.py",400   "sha256": "bc62c748efd2f50db7a17933a432d697994a4a6d3ff90182b62ffd47a7774af6",401   "language": "Python",402   "lines": 198,403   "truncated": false,404   "block": 18,405   "row": 167406  },407  {408   "path": "organoid_tracker/core/position_collection.py",409   "sha256": "d95369b2aa9046799fd8a1fe17df705567c5ba0b67791d7333b0013bda2f947f",410   "language": "Python",411   "lines": 734,412   "truncated": false,413   "block": 18,414   "row": 4927415  },416  {417   "path": "organoid_tracker/core/position_data.py",418   "sha256": "b0e1fb02ed83b7c196ac59c343499351c370f64c78b6676199e9fa229529ad03",419   "language": "Python",420   "lines": 115,421   "truncated": false,422   "block": 17,423   "row": 30096424  },425  {426   "path": "organoid_tracker/core/resolution.py",427   "sha256": "203075c82819ce3d09536c97f56796ec289bbb260a62d0a89635be4987b3f507",428   "language": "Python",429   "lines": 218,430   "truncated": false,431   "block": 18,432   "row": 517433  },434  {435   "path": "organoid_tracker/core/spline.py",436   "sha256": "80bc80132944e51ddab998bc0e3889c1f6ab9c4d8b01c82be317b0f811cbc30b",437   "language": "Python",438   "lines": 624,439   "truncated": false,440   "block": 18,441   "row": 4534442  },443  {444   "path": "organoid_tracker/core/typing.py",445   "sha256": "b8443f2e8b52fb8b2f8757501a6ce1618b2821772a985a6bff8b6a3cdd20d648",446   "language": "Python",447   "lines": 20,448   "truncated": false,449   "block": 17,450   "row": 18264451  },452  {453   "path": "organoid_tracker/core/vector.py",454   "sha256": "d448257aea1dd2c04676367df7ab145f6d310f75a0f1f3007a2ea102766b345d",455   "language": "Python",456   "lines": 140,457   "truncated": false,458   "block": 17,459   "row": 27943460  },461  {462   "path": "organoid_tracker/core/warning_limits.py",463   "sha256": "1096677cb5e4e7fc272eda7f54b846fcc7d744bc0b709bdccc762274bf80c5da",464   "language": "Python",465   "lines": 74,466   "truncated": false,467   "block": 17,468   "row": 26259469  },470  {471   "path": "organoid_tracker/gui/__init__.py",472   "sha256": "9820042680822e3bfc3cd8ef0fdb5199158c4f68e411c5011653602ce51a94b8",473   "language": "Python",474   "lines": 19,475   "truncated": false,476   "block": 17,477   "row": 19128478  },479  {480   "path": "organoid_tracker/gui/_rich_text_dialog.py",481   "sha256": "a81a02e18f902892626cc5fc6bea42a89c29148486c05b283d87884e8ae272f3",482   "language": "Python",483   "lines": 90,484   "truncated": false,485   "block": 17,486   "row": 25562487  },488  {489   "path": "organoid_tracker/gui/action.py",490   "sha256": "1f2c5de4d1e183fa065daa544c4bf766a4ede54d4e85986682af1c2cdca25fc2",491   "language": "Python",492   "lines": 402,493   "truncated": false,494   "block": 18,495   "row": 3052496  },497  {498   "path": "organoid_tracker/gui/dialog.py",499   "sha256": "0d8fcb2858d32ecf9f15d219cea3be7ebd18a1c9dca35cdb93f16f504c007ef5",500   "language": "Python",501   "lines": 390,502   "truncated": false,503   "block": 18,504   "row": 2511505  },506  {507   "path": "organoid_tracker/gui/gui_experiment.py",508   "sha256": "76a29dc301930069c1df1fe44cffd0da0888afa29971c56b38b1eab04ce2a19d",509   "language": "Python",510   "lines": 224,511   "truncated": false,512   "block": 18,513   "row": 27514  },515  {516   "path": "organoid_tracker/gui/icon_getter.py",517   "sha256": "1a4fd3e7ef1914f766be8030ce8e7b61527cf8415a6aaecb23980e28a70bc024",518   "language": "Python",519   "lines": 19,520   "truncated": false,521   "block": 17,522   "row": 19202523  },524  {525   "path": "organoid_tracker/gui/image_resolution_dialog.py",526   "sha256": "5c913558c8f1f5e61e3a829062e5cc1151b677ffd519cb3e0f5c1aaace053082",527   "language": "Python",528   "lines": 123,529   "truncated": false,530   "block": 17,531   "row": 28483532  },533  {534   "path": "organoid_tracker/gui/image_series_loader_dialog.py",535   "sha256": "95f5ea9acba8b0d8f1259cf2c7421b580d01c7a1a8874d7f998fa31138163940",536   "language": "Python",537   "lines": 66,538   "truncated": false,539   "block": 17,540   "row": 24996541  },542  {543   "path": "organoid_tracker/gui/location_map.py",544   "sha256": "0e606951095df27df5b0016593f1e89ea86bf2c811c74023e75ba546e71c0d08",545   "language": "Python",546   "lines": 81,547   "truncated": false,548   "block": 17,549   "row": 26665550  },551  {552   "path": "organoid_tracker/gui/main_window.py",553   "sha256": "4ec519aeae1cb29b0110de885310df6fd83596e2bb771c20d0620d33aecee3bd",554   "language": "Python",555   "lines": 386,556   "truncated": false,557   "block": 18,558   "row": 2441559  },560  {561   "path": "organoid_tracker/gui/option_choose_dialog.py",562   "sha256": "d0361f878a8274c9e04f085261641a7eb7f311ee1058226e40fb6c97214acdc0",563   "language": "Python",564   "lines": 188,565   "truncated": false,566   "block": 17,567   "row": 30591568  },569  {570   "path": "organoid_tracker/gui/progress_bar.py",571   "sha256": "c9f5e81f19f475a7d4a5c9a94c7f3d6dabf0047d6fcdf8f2519ba37562a4b21c",572   "language": "Python",573   "lines": 36,574   "truncated": false,575   "block": 17,576   "row": 20359577  },578  {579   "path": "organoid_tracker/gui/threading.py",580   "sha256": "b609e15b3c891947e8eb23ae47edae5012bf4c443062ef5a778ae9e0b14c633a",581   "language": "Python",582   "lines": 138,583   "truncated": false,584   "block": 17,585   "row": 28698586  },587  {588   "path": "organoid_tracker/gui/toolbar.py",589   "sha256": "31099df96b656538c1e19bbfd6a025a291c844724f68ca387de5943b32e85a98",590   "language": "Python",591   "lines": 126,592   "truncated": false,593   "block": 17,594   "row": 29307595  },596  {597   "path": "organoid_tracker/gui/undo_redo.py",598   "sha256": "3ccdcd5852023162aaf04f23fbd01d976892a4787e789e63dbdd61809ea24629",599   "language": "Python",600   "lines": 123,601   "truncated": false,602   "block": 17,603   "row": 27957604  },605  {606   "path": "organoid_tracker/gui/window.py",607   "sha256": "ac53d8c6ec071e9d49ef9aae7a9683218fcf83dcd1c79fa947ecff1e0bc5990e",608   "language": "Python",609   "lines": 322,610   "truncated": false,611   "block": 18,612   "row": 1378613  },614  {615   "path": "organoid_tracker/gui/worker_job.py",616   "sha256": "e37b9405154d2c56478ec7dcfabd91018a95f1f6651d12190c6190cabff4239e",617   "language": "Python",618   "lines": 134,619   "truncated": false,620   "block": 17,621   "row": 29430622  },623  {624   "path": "organoid_tracker/guizela_tracker_compatibility/__init__.py",625   "sha256": "c6c0b8dfc5360160b4c42e3d8574ed37eaa8c176501fbac3cdb28d413173ca7d",626   "language": "Python",627   "lines": 18,628   "truncated": false,629   "block": 17,630   "row": 19454631  },632  {633   "path": "organoid_tracker/guizela_tracker_compatibility/axis_lib.py",634   "sha256": "c06c79dc728a59ec21287dfb14aded2a677ddf4b9d65b931897bbd27f5716ecc",635   "language": "Python",636   "lines": 20,637   "truncated": false,638   "block": 17,639   "row": 18604640  },641  {642   "path": "organoid_tracker/guizela_tracker_compatibility/axis_lib_v2.py",643   "sha256": "5e44411b9296c5d1f22598285aaebe4d0201fd1a7d58c20ec5467ccca1c7fa10",644   "language": "Python",645   "lines": 72,646   "truncated": false,647   "block": 17,648   "row": 22546649  },650  {651   "path": "organoid_tracker/guizela_tracker_compatibility/cell_type_converter.py",652   "sha256": "ae92a3738fad29a8b194f6bfa2e266dad0f7236af3e654bfb3414f4426630fa2",653   "language": "Python",654   "lines": 14,655   "truncated": false,656   "block": 17,657   "row": 18480658  },659  {660   "path": "organoid_tracker/guizela_tracker_compatibility/guizela_data_exporter.py",661   "sha256": "d2b60841233d3d2500cb31fd181e548111ae48ca95d3f990c541960046ff335e",662   "language": "Python",663   "lines": 197,664   "truncated": false,665   "block": 17,666   "row": 32426667  },668  {669   "path": "organoid_tracker/guizela_tracker_compatibility/guizela_data_importer.py",670   "sha256": "07ecde23bc4082a43a3d73dfa439d491753e3e8377a9dfb75b014e134100280d",671   "language": "Python",672   "lines": 233,673   "truncated": false,674   "block": 18,675   "row": 538676  },677  {678   "path": "organoid_tracker/guizela_tracker_compatibility/track_lib.py",679   "sha256": "c5ed98e4473d9a070894ff67adc3b58891df931bd37d1198ac3eefd479feb673",680   "language": "Python",681   "lines": 99,682   "truncated": false,683   "block": 17,684   "row": 24844685  },686  {687   "path": "organoid_tracker/guizela_tracker_compatibility/track_lib_v2.py",688   "sha256": "33dd297db5b713dc7722f2c35cb0414762609bd3119e216f5550221dc3e443f1",689   "language": "Python",690   "lines": 45,691   "truncated": false,692   "block": 17,693   "row": 21075694  },695  {696   "path": "organoid_tracker/guizela_tracker_compatibility/track_lib_v3.py",697   "sha256": "2707fce247ca74c669472387db5532ce07d0b01871bf92c3f92903cd08405001",698   "language": "Python",699   "lines": 44,700   "truncated": false,701   "block": 17,702   "row": 21012703  },704  {705   "path": "organoid_tracker/guizela_tracker_compatibility/track_lib_v4.py",706   "sha256": "2707fce247ca74c669472387db5532ce07d0b01871bf92c3f92903cd08405001",707   "language": "Python",708   "lines": 44,709   "truncated": false,710   "block": 17,711   "row": 21012712  },713  {714   "path": "organoid_tracker/image_loading/__init__.py",715   "sha256": "a17843dd9e498ef1bc161edbef89dc70b9ba0932b6f554a7030686d809fc95f4",716   "language": "Python",717   "lines": 43,718   "truncated": false,719   "block": 17,720   "row": 22113721  },722  {723   "path": "organoid_tracker/image_loading/_lif.py",724   "sha256": "ea5a67951f7db671fa2eabc226f99aec4dde769d4852e0d9b19dc77a80315453",725   "language": "Python",726   "lines": 987,727   "truncated": false,728   "block": 18,729   "row": 5047730  },731  {732   "path": "organoid_tracker/image_loading/_simple_image_file_io.py",733   "sha256": "9a5854821a294b22e144ebf74d1afc061ee314e2f6a0c9bd70561bc4c786216b",734   "language": "Python",735   "lines": 166,736   "truncated": false,737   "block": 17,738   "row": 31119739  },740  {741   "path": "organoid_tracker/image_loading/array_image_loader.py",742   "sha256": "41460a012dedbe60b49d767983b850d184b95e716e3bbb0c62ac1a8707c66835",743   "language": "Python",744   "lines": 48,745   "truncated": false,746   "block": 17,747   "row": 22119748  },749  {750   "path": "organoid_tracker/image_loading/builtin_image_filters.py",751   "sha256": "be862a049bf31be7220d4fc891697f51099eb44883a61753c24d0110590174cd",752   "language": "Python",753   "lines": 255,754   "truncated": false,755   "block": 18,756   "row": 214757  },758  {759   "path": "organoid_tracker/image_loading/builtin_merging_image_loaders.py",760   "sha256": "03f67eea80d393cac00b7767f362d7b91ace8e87a3b28b669ad87e0b7396bcbd",761   "language": "Python",762   "lines": 437,763   "truncated": false,764   "block": 18,765   "row": 3203766  },767  {768   "path": "organoid_tracker/image_loading/czifile_image_loader.py",769   "sha256": "947f2d3734793bb6afe614c9b9390d51fa260ca89fcaec38ddbb1eeff6fa3a9f",770   "language": "Python",771   "lines": 267,772   "truncated": false,773   "block": 18,774   "row": 889775  },776  {777   "path": "organoid_tracker/image_loading/folder_image_loader.py",778   "sha256": "e433a9bbf1e7b9e2e749e6ea386d91dcead5cef862ff2571eea7cb870499d113",779   "language": "Python",780   "lines": 196,781   "truncated": false,782   "block": 17,783   "row": 32713784  },785  {786   "path": "organoid_tracker/image_loading/general_image_loader.py",787   "sha256": "9cba6f05d2b1f4b9c860eb57f3a0513e019cd9de08fb106795c5996c5a155530",788   "language": "Python",789   "lines": 98,790   "truncated": false,791   "block": 17,792   "row": 28946793  },794  {795   "path": "organoid_tracker/image_loading/imsfile_image_loader.py",796   "sha256": "cf592f9e026d9ef20181eae63b6f5dcb52b9658e19a48d66b3986ed552ff15a8",797   "language": "Python",798   "lines": 799,799   "truncated": false,800   "block": 18,801   "row": 4828802  },803  {804   "path": "organoid_tracker/image_loading/liffile_image_loader.py",805   "sha256": "0ddd172bdc423daf78a45119336e74cdc844abc09946ab5cac0abd603d733ee1",806   "language": "Python",807   "lines": 222,808   "truncated": false,809   "block": 17,810   "row": 32498811  },812  {813   "path": "organoid_tracker/image_loading/merged_tiff_image_loader.py",814   "sha256": "fda3a186c61958aa62ea120a4891b0f898ef1b958129badbef8abb90bbe8f619",815   "language": "Python",816   "lines": 248,817   "truncated": false,818   "block": 18,819   "row": 638820  },821  {822   "path": "organoid_tracker/image_loading/nd2file_image_loader.py",823   "sha256": "a3b7d296c578ce93176ee3b3b37f3c80b70a826224e1600a571a981877c8fc81",824   "language": "Python",825   "lines": 199,826   "truncated": false,827   "block": 17,828   "row": 32464829  },830  {831   "path": "organoid_tracker/image_loading/timestamped_folder_image_loader.py",832   "sha256": "e980f75b0b50b9e0e5469a4be5bcd01d365e687b973eafd36fa54df0940e2805",833   "language": "Python",834   "lines": 192,835   "truncated": false,836   "block": 17,837   "row": 32473838  },839  {840   "path": "organoid_tracker/image_loading/zarr_image_loader.py",841   "sha256": "b0f48c4cd0b334a65e27185a31592a0e31d857c079665bf604fe5b6c462c48af",842   "language": "Python",843   "lines": 315,844   "truncated": false,845   "block": 18,846   "row": 1964847  },848  {849   "path": "organoid_tracker/imaging/__init__.py",850   "sha256": "e73e6e19331250a20455c60cb79adf63bed268b5621308fa89d5a17a55345027",851   "language": "Python",852   "lines": 20,853   "truncated": false,854   "block": 17,855   "row": 19322856  },857  {858   "path": "organoid_tracker/imaging/angles.py",859   "sha256": "3eb0f95a71a1137370162e9e9be43072b66fe19dc13fc555092c8aa6b0249fec",860   "language": "Python",861   "lines": 110,862   "truncated": false,863   "block": 17,864   "row": 26969865  },866  {867   "path": "organoid_tracker/imaging/cropper.py",868   "sha256": "10e450be5ea0866977e8a6f35cc8bcb8a9a40edcdfb1ae4d2946c08697c86732",869   "language": "Python",870   "lines": 128,871   "truncated": false,872   "block": 17,873   "row": 29095874  },875  {876   "path": "organoid_tracker/imaging/ctc_io.py",877   "sha256": "c6580cfc1987805e9f78030cac25038f68e5bba15fd4b702884ae34bba912014",878   "language": "Python",879   "lines": 263,880   "truncated": false,881   "block": 18,882   "row": 843883  },884  {885   "path": "organoid_tracker/imaging/depth_colored_image_creator.py",886   "sha256": "717f1c4b5151cf486cf52778b9626d36d7f2750315dae1c582fcc906c7969993",887   "language": "Python",888   "lines": 88,889   "truncated": false,890   "block": 17,891   "row": 25975892  },893  {894   "path": "organoid_tracker/imaging/file_loader.py",895   "sha256": "a76b7c3152604e948cd23aea78ee5900b37d4453c67acdf21c887895429044d9",896   "language": "Python",897   "lines": 89,898   "truncated": false,899   "block": 17,900   "row": 26491901  },902  {903   "path": "organoid_tracker/imaging/geff_io.py",904   "sha256": "cac0d251d09e800182d1c29e092329408f6fad548ac2b24344c42620477998b5",905   "language": "Python",906   "lines": 492,907   "truncated": false,908   "block": 18,909   "row": 3628910  },911  {912   "path": "organoid_tracker/imaging/image_adder.py",913   "sha256": "ad34e6b325aa8a8c270265ca49b2cb7ae990d050e663c0e85a18527b608703b2",914   "language": "Python",915   "lines": 27,916   "truncated": false,917   "block": 17,918   "row": 20966919  },920  {921   "path": "organoid_tracker/imaging/image_file_name_pattern_finder.py",922   "sha256": "3542ccda64c6cd22da08da299bc9f218de916a63be07f360bc4d45466ac59684",923   "language": "Python",924   "lines": 107,925   "truncated": false,926   "block": 17,927   "row": 28484928  },929  {930   "path": "organoid_tracker/imaging/io.py",931   "sha256": "56927bff8f3798543153834072dda76bc5cf4658d8d01c9efd41fb8c47733d75",932   "language": "Python",933   "lines": 900,934   "truncated": false,935   "block": 18,936   "row": 5101937  },938  {939   "path": "organoid_tracker/imaging/lines.py",940   "sha256": "b51a7e51e1b650f2b0c30eb520b7d48959b8efd2d2e7c84cea27c217913ac84a",941   "language": "Python",942   "lines": 78,943   "truncated": false,944   "block": 17,945   "row": 25118946  },947  {948   "path": "organoid_tracker/imaging/list_io.py",949   "sha256": "4452fa4ef5e4a1f1fe2cca28ec796842c20876b9f33b9fd8dd375fbd81d0f57d",950   "language": "Python",951   "lines": 171,952   "truncated": false,953   "block": 17,954   "row": 31950955  },956  {957   "path": "organoid_tracker/imaging/trackmate_io.py",958   "sha256": "64c3db608ef6c6ebf1fa0997f89f408c3389b95fcf505d56a261cf3c4c0ad427",959   "language": "Python",960   "lines": 237,961   "truncated": false,962   "block": 18,963   "row": 394964  },965  {966   "path": "organoid_tracker/linear_models/logistic_regression.py",967   "sha256": "8d918f1724e0ebb9cf094538e60ea94a7880fe98527c01deab965bf83b1b4e46",968   "language": "Python",969   "lines": 26,970   "truncated": false,971   "block": 17,972   "row": 19381973  },974  {975   "path": "organoid_tracker/linking/__init__.py",976   "sha256": "6baf8958758fb26c30b4af9e10b5183040384fd04a198b2356cfedad961cdddb",977   "language": "Python",978   "lines": 28,979   "truncated": false,980   "block": 17,981   "row": 21273982  },983  {984   "path": "organoid_tracker/linking/cell_division_finder.py",985   "sha256": "835ab53725222adbc1f36233e5fcb721ac60c57bf96465dedeb5a59710e8148d",986   "language": "Python",987   "lines": 124,988   "truncated": false,989   "block": 17,990   "row": 28467991  },992  {993   "path": "organoid_tracker/linking/dpct_linker.py",994   "sha256": "fa15a6a7e6b0ac76ff8f5b1d7b2d1015db47e1a7af86d8e08ec06186adf32cc5",995   "language": "Python",996   "lines": 259,997   "truncated": false,998   "block": 18,999   "row": 18261000  },1001  {1002   "path": "organoid_tracker/linking/nearby_position_finder.py",1003   "sha256": "481f2f1705a24098c30706b177b553159206e815de7d1f47113d98061e369b00",1004   "language": "Python",1005   "lines": 164,1006   "truncated": false,1007   "block": 17,1008   "row": 310851009  },1010  {1011   "path": "organoid_tracker/linking/nearest_neighbor_linker.py",1012   "sha256": "8dd05dfb9035a34e3d4e27cbbe156c27b97b23f315cf460185bb2dba4211e124",1013   "language": "Python",1014   "lines": 186,1015   "truncated": false,1016   "block": 18,1017   "row": 781018  },1019  {1020   "path": "organoid_tracker/linking_analysis/__init__.py",1021   "sha256": "a9048314c34b6d3ebc91659346b5ccc07b5d8f5e627db4cb1174a44bfb6186ff",1022   "language": "Python",1023   "lines": 15,1024   "truncated": false,1025   "block": 17,1026   "row": 186661027  },1028  {1029   "path": "organoid_tracker/linking_analysis/cell_compartment_finder.py",1030   "sha256": "26fab5273e32f45c722eafe9e31d84d543a0173b2c2f17b1d93a724a169ab245",1031   "language": "Python",1032   "lines": 54,1033   "truncated": false,1034   "block": 17,1035   "row": 238501036  },1037  {1038   "path": "organoid_tracker/linking_analysis/cell_division_counter.py",1039   "sha256": "563df2c0fcc68be38756702e9061e68071027e4694706fee1984f2049a9cb57f",1040   "language": "Python",1041   "lines": 32,1042   "truncated": false,1043   "block": 17,1044   "row": 204611045  },1046  {1047   "path": "organoid_tracker/linking_analysis/cell_error_finder.py",1048   "sha256": "2127c38e7637c3391b769d840e8be53301b08df19da5c73f78430b7940cc5727",1049   "language": "Python",1050   "lines": 201,1051   "truncated": false,1052   "block": 18,1053   "row": 871054  },1055  {1056   "path": "organoid_tracker/linking_analysis/cell_fate_finder.py",1057   "sha256": "9287448ea81726867c89e24398c6158e2bcc4a21047290c8f2bb4c4a087f29c5",1058   "language": "Python",1059   "lines": 81,1060   "truncated": false,1061   "block": 17,1062   "row": 266901063  },1064  {1065   "path": "organoid_tracker/linking_analysis/cell_nearby_death_counter.py",1066   "sha256": "5a6c26513f3fad046f13db52c39c09f1d084e4d8fba906cb4d6440c863f39948",1067   "language": "Python",1068   "lines": 69,1069   "truncated": false,1070   "block": 17,1071   "row": 253321072  },1073  {1074   "path": "organoid_tracker/linking_analysis/errors.py",1075   "sha256": "6a86e4cdd6dfd1996bf0205a6c24ece00d040181268b527cca7c388548f01dc0",1076   "language": "Python",1077   "lines": 72,1078   "truncated": false,1079   "block": 17,1080   "row": 250241081  },1082  {1083   "path": "organoid_tracker/linking_analysis/lineage_division_counter.py",1084   "sha256": "05daf2d711404101a8b1397059201d6f6af903138a1301b0cbf9bdcf151eecea",1085   "language": "Python",1086   "lines": 59,1087   "truncated": false,1088   "block": 17,1089   "row": 257281090  },1091  {1092   "path": "organoid_tracker/linking_analysis/lineage_drawing.py",1093   "sha256": "a9075fa56a11035d1ae93f5c77e23580c19b76bbc3aaf39778b2ed603b38ba11",1094   "language": "Python",1095   "lines": 268,1096   "truncated": false,1097   "block": 18,1098   "row": 15981099  },1100  {1101   "path": "organoid_tracker/linking_analysis/lineage_end_finder.py",1102   "sha256": "9a660dcc73db438506fd576d8552957847862496c7d61f38d8494f1cb7897093",1103   "language": "Python",1104   "lines": 24,1105   "truncated": false,1106   "block": 17,1107   "row": 193571108  },1109  {1110   "path": "organoid_tracker/linking_analysis/lineage_error_finder.py",1111   "sha256": "50db7ebff9b56d538d7f9ca70ca3a0bce55cf5b741a66c70c485ab228fa0087d",1112   "language": "Python",1113   "lines": 178,1114   "truncated": false,1115   "block": 17,1116   "row": 312511117  },1118  {1119   "path": "organoid_tracker/linking_analysis/lineage_fate_finder.py",1120   "sha256": "7dc45d5329e987bbd57b4894e657d19b352f77a6f7c5273d2980debba4162cb5",1121   "language": "Python",1122   "lines": 46,1123   "truncated": false,1124   "block": 17,1125   "row": 235291126  },1127  {1128   "path": "organoid_tracker/linking_analysis/lineage_id_creator.py",1129   "sha256": "f96208677f6288a256fde1e7c87e81cd623eb1ff41c4567dc90e122509befeb9",1130   "language": "Python",1131   "lines": 74,1132   "truncated": false,1133   "block": 17,1134   "row": 243911135  },1136  {1137   "path": "organoid_tracker/linking_analysis/lineage_markers.py",1138   "sha256": "6d4a7230ac402700b833515f0fc47e2501b5e843d61a3206415f466caf87c17f",1139   "language": "Python",1140   "lines": 19,1141   "truncated": false,1142   "block": 17,1143   "row": 193071144  },1145  {1146   "path": "organoid_tracker/linking_analysis/linking_markers.py",1147   "sha256": "3b6d048622737646ec7fcf84582bc75a95865b1ab77b7e5ecba0db96ce0c0bfe",1148   "language": "Python",1149   "lines": 238,1150   "truncated": false,1151   "block": 18,1152   "row": 3761153  },1154  {1155   "path": "organoid_tracker/linking_analysis/links_filter.py",1156   "sha256": "84e48af49f30da97dd88f2f3e1df410fe0fd17715ffa6629eb116ed5bed3386c",1157   "language": "Python",1158   "lines": 36,1159   "truncated": false,1160   "block": 17,1161   "row": 213161162  },1163  {1164   "path": "organoid_tracker/linking_analysis/links_postprocessor.py",1165   "sha256": "57d89dfb7b141f638d5c4ef3bbecef24e8a01854c88186635c3976076a8c1d48",1166   "language": "Python",1167   "lines": 780,1168   "truncated": false,1169   "block": 18,1170   "row": 51241171  },1172  {1173   "path": "organoid_tracker/linking_analysis/particle_age_finder.py",1174   "sha256": "c6198a73b7e967fdd443778f0cdd9729a80f413ac87f507485f8774c8294d5a1",1175   "language": "Python",1176   "lines": 40,1177   "truncated": false,1178   "block": 17,1179   "row": 227981180  },1181  {1182   "path": "organoid_tracker/linking_analysis/particle_flow_calculator.py",1183   "sha256": "a6ffc797ef9efc68b87eaa6301acfba8d6f693d0b5743fd4a7f318a12e5cc68d",1184   "language": "Python",1185   "lines": 71,1186   "truncated": false,1187   "block": 17,1188   "row": 244351189  },1190  {1191   "path": "organoid_tracker/linking_analysis/particle_movement_finder.py",1192   "sha256": "03c2bf85ad22d1e7ac1e6d7bbb37aacc832df08898fe971ba71221e549de8e8d",1193   "language": "Python",1194   "lines": 30,1195   "truncated": false,1196   "block": 17,1197   "row": 213341198  },1199  {1200   "path": "organoid_tracker/linking_analysis/particle_rotation_calculator.py",

Showing the first 1,200 of 2766 lines. Download the file for the rest.