OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/rushalz/rosmap_mofa_public_release",4 "url": "https://github.com/RushAlz/ROSMAP_MOFA_public_release",5 "host": "github.com",6 "commit": "356f0e25ba1d73126a32881a61589fd88f6658de",7 "license": "GPL-2.0",8 "license_confirmed_by": "license file LICENCE",9 "redistribution": "yes",10 "files": [11 {12 "path": "1.MOFA_analysis/1.Run_MOFA.R",13 "sha256": "3e694a8c0b79438e0ec8e362a758b1b09d9ffff8008fbecadb501328aa554103",14 "language": "R",15 "lines": 79,16 "truncated": false,17 "block": 8,18 "row": 221819 },20 {21 "path": "1.MOFA_analysis/2.Correlation_between_factors.R",22 "sha256": "c8587be7dc133c49fbe3e94d192d6cecf1a50bed9bd4fc43a15ffd6d52969ec6",23 "language": "R",24 "lines": 21,25 "truncated": false,26 "block": 8,27 "row": 147828 },29 {30 "path": "1.MOFA_analysis/3.Samples_overview.R",31 "sha256": "1c0a0b1c86e736820005a8b3c4b0af125f58284307de84d404376b4ef5049df2",32 "language": "R",33 "lines": 54,34 "truncated": false,35 "block": 8,36 "row": 219737 },38 {39 "path": "1.MOFA_analysis/4.Var_explained_by_all_factors.R",40 "sha256": "69c40116662b5d6af28d64d0fe97a8d05c17734e6c6f30983ee1dc531195863b",41 "language": "R",42 "lines": 48,43 "truncated": false,44 "block": 8,45 "row": 201746 },47 {48 "path": "1.MOFA_analysis/5.Total_var_explained.R",49 "sha256": "3aa32ce8de4eba167e712f7bd77189ffa784508d348ceabd3d7a9c8bdfef9ed3",50 "language": "R",51 "lines": 53,52 "truncated": false,53 "block": 8,54 "row": 212855 },56 {57 "path": "1.MOFA_analysis/6.checking_variance_explained.R",58 "sha256": "4e844136bbece2b2d9c8f24165ac36ef091165aa4534ad0d458d4a9edb2eb185",59 "language": "R",60 "lines": 52,61 "truncated": false,62 "block": 8,63 "row": 212464 },65 {66 "path": "1.MOFA_analysis/7.Var_explained_by_factor.R",67 "sha256": "57ae21aa4696184f8019f9dfa7cbdd3870a7a2ff90ffe698427e0e0e02753eaf",68 "language": "R",69 "lines": 63,70 "truncated": false,71 "block": 8,72 "row": 235473 },74 {75 "path": "2.GSEA_analysis/1.Genes_GSEA.R",76 "sha256": "288241f28e089fd65c6eba8ee1b824364e7f0b30dae2d7b757c46ef9f5451cfb",77 "language": "R",78 "lines": 46,79 "truncated": false,80 "block": 8,81 "row": 200782 },83 {84 "path": "2.GSEA_analysis/1.Metabolites_GSEA_list.R",85 "sha256": "8a60eaa4af3fddbabfabbbe112157261903e6870c629469a068366f065fdd018",86 "language": "R",87 "lines": 126,88 "truncated": false,89 "block": 8,90 "row": 337191 },92 {93 "path": "2.GSEA_analysis/1.Modules_GSEA_list.R",94 "sha256": "063730b02076a0f20affe5d214f9bdc425c59dd408bfbc860c5e78057b422123",95 "language": "R",96 "lines": 87,97 "truncated": false,98 "block": 8,99 "row": 3222100 },101 {102 "path": "2.GSEA_analysis/2.Performing_GSEA.R",103 "sha256": "b7dabfc58950926f5f24e22ad2f39cfce4677483ac2410834e6c0dc8782970b0",104 "language": "R",105 "lines": 314,106 "truncated": false,107 "block": 8,108 "row": 4268109 },110 {111 "path": "2.GSEA_analysis/3.GSEA_top_terms_for_each_view.R",112 "sha256": "d8f703bf6fe8c07f5b7007a0f5df4a2ddca067e2a250d1afa51ad98a39de7b85",113 "language": "R",114 "lines": 664,115 "truncated": false,116 "block": 8,117 "row": 5017118 },119 {120 "path": "2.GSEA_analysis/4.Factors_characterization.R",121 "sha256": "b11f6125b0f2f26d500b129c8696113793de04f467ef1926663d1fd84555c240",122 "language": "R",123 "lines": 252,124 "truncated": false,125 "block": 8,126 "row": 4271127 },128 {129 "path": "3.Loadings_analysis/1.displaying_feature_weights.R",130 "sha256": "e9449c15e33a1dfadf5cb21f05baa24611aeb2c87890f5381bec02835dc10b9d",131 "language": "R",132 "lines": 290,133 "truncated": false,134 "block": 8,135 "row": 4525136 },137 {138 "path": "3.Loadings_analysis/2.display_jitter_plots.R",139 "sha256": "78b5ee1e3668b27fd03faa84f7d35ec7073ea2e81ee8845e5b75828b030fb39a",140 "language": "R",141 "lines": 141,142 "truncated": false,143 "block": 8,144 "row": 3455145 },146 {147 "path": "4.Phenotypes_analysis/1.displaying_FactorsXcovariates.R",148 "sha256": "bdebf98a677a065112abcf4080520f9dcfbfe019ac6895f177d8ac5f4b390a82",149 "language": "R",150 "lines": 231,151 "truncated": false,152 "block": 8,153 "row": 4269154 },155 {156 "path": "4.Phenotypes_analysis/2.F14_with_and_without_proteomics.R",157 "sha256": "812c63693ec11fa11217be5ac91f61b1e79352f2f0a24c683f873fe410d0aa0e",158 "language": "R",159 "lines": 291,160 "truncated": false,161 "block": 8,162 "row": 4498163 },164 {165 "path": "5.Clustering_analysis/ploting_clusterization.R",166 "sha256": "c306a5bdf605091e72ccb22a15c13c9d4d637fd127d02039ccf96214513c9d82",167 "language": "R",168 "lines": 575,169 "truncated": false,170 "block": 8,171 "row": 4907172 },173 {174 "path": "6.Manuscript_code/Supplementary_tables.R",175 "sha256": "696455fee6e9c5ebb248160088d13f038e5f87296da9c4eab288aade630efc97",176 "language": "R",177 "lines": 636,178 "truncated": false,179 "block": 8,180 "row": 5059181 },182 {183 "path": "6.Manuscript_code/UpSet_plot.R",184 "sha256": "be37031d4488a17c8f4604ef8e86bf707a8a0e63adefe4999b6c18516418a9e2",185 "language": "R",186 "lines": 97,187 "truncated": false,188 "block": 8,189 "row": 2828190 },191 {192 "path": "6.Manuscript_code/compare_loadings_factor2_and_factor3.R",193 "sha256": "fe346ebc4a08d776d9f51b4a451ad4336730d4c3e7b04f72bf379044d55f5a84",194 "language": "R",195 "lines": 179,196 "truncated": false,197 "block": 8,198 "row": 3770199 },200 {201 "path": "LICENCE",202 "sha256": "640d90f6ee401241ff62834d0d1b33f83049e99b8bfdfa04ed1b0a1635dde3e7",203 "language": "License",204 "lines": 340,205 "truncated": false,206 "block": 6,207 "row": 2096208 },209 {210 "path": "README.md",211 "sha256": "7625167bd65576ed01a662e4dd0fcb1de2537a7f4a6d035191ad02c220a5ca30",212 "language": "Text",213 "lines": 46,214 "truncated": false,215 "block": 8,216 "row": 9900217 }218 ]219}