Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__morphometrics__morphometrics.json642 linesDownload Raw Back to c4
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/morphometrics/morphometrics",4 "url": "https://github.com/morphometrics/morphometrics",5 "host": "github.com",6 "commit": "9e8ec13ee675cae86781e9dc236730e018c1ace3",7 "license": "BSD-3-Clause",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "4d0ed941621794f6d0e99999bd936e7c15187514f33f32e8557bb714fa6e7c32",14   "language": "License",15   "lines": 28,16   "truncated": false,17   "block": 22,18   "row": 1412619  },20  {21   "path": "README.md",22   "sha256": "4f5f0a542098edeff0a589706c53dbaad6cd614c73ba693ee7fa6a7a28ba26b7",23   "language": "Text",24   "lines": 143,25   "truncated": false,26   "block": 24,27   "row": 74128  },29  {30   "path": "examples/label_expansion.py",31   "sha256": "ec8159dec59c0458c215987d229c5c42c50ad0e05d9a9439065ae156cc487e67",32   "language": "Python",33   "lines": 20,34   "truncated": false,35   "block": 22,36   "row": 2729737  },38  {39   "path": "examples/labeling_example.py",40   "sha256": "a7a87f740bc1b649889a285858d82e522a27e26c8046ae1222a1f0b6736883a4",41   "language": "Python",42   "lines": 75,43   "truncated": false,44   "block": 23,45   "row": 155846  },47  {48   "path": "examples/measure_with_widget.py",49   "sha256": "9f3f0d18be6d903662bd17c74cc80391116d5e51b1f5d60717096ded02d75a17",50   "language": "Python",51   "lines": 21,52   "truncated": false,53   "block": 22,54   "row": 2765055  },56  {57   "path": "examples/mesh_binary_mask.ipynb",58   "sha256": "9d3e44b9e0873fe9bf0e2e61d991ba4ed4bb693e7e8b0252efd904721a020cab",59   "language": "Jupyter",60   "lines": 41,61   "truncated": false,62   "block": 22,63   "row": 1245864  },65  {66   "path": "examples/object_classification.ipynb",67   "sha256": "31e6acf41e1beeb46314c3af142ed5bd089127d9049ee8b5f08750d77fcaa7f5",68   "language": "Jupyter",69   "lines": 183,70   "truncated": false,71   "block": 22,72   "row": 1292373  },74  {75   "path": "examples/registered_measurements.py",76   "sha256": "f976ebebc643a7018120230e7209406d96ef1945614e5b29e19c7f8fcf006020",77   "language": "Python",78   "lines": 43,79   "truncated": false,80   "block": 22,81   "row": 2901782  },83  {84   "path": "examples/surface_distance_measurement.ipynb",85   "sha256": "78872139d1d1df5e97a3174f842b3313fe05c14d07d3744287ef14e5898a7626",86   "language": "Jupyter",87   "lines": 97,88   "truncated": false,89   "block": 22,90   "row": 1258391  },92  {93   "path": "setup.py",94   "sha256": "1f2367ffcdf036b149d75eee780134bed40227ff687bac688f10c261cbcc9578",95   "language": "Python",96   "lines": 8,97   "truncated": false,98   "block": 22,99   "row": 26126100  },101  {102   "path": "src/morphometrics/__init__.py",103   "sha256": "bb0cef1225c3e957d78c37cf50037873b1e7916c8a1e5a77af6d9d1c3e57e108",104   "language": "Python",105   "lines": 7,106   "truncated": false,107   "block": 22,108   "row": 25954109  },110  {111   "path": "src/morphometrics/_gui/_qt/_tests/test_annotation_widgets.py",112   "sha256": "9c3e301e888f14956410c31765383602ad65cd8f9ca440c053fea43204a3e9c6",113   "language": "Python",114   "lines": 73,115   "truncated": false,116   "block": 23,117   "row": 1808118  },119  {120   "path": "src/morphometrics/_gui/_qt/annotation_widgets.py",121   "sha256": "4f3b78e9b6af39932c30870c78d865a25db0c8f492fd5553af0c6d811062a700",122   "language": "Python",123   "lines": 422,124   "truncated": false,125   "block": 23,126   "row": 12268127  },128  {129   "path": "src/morphometrics/_gui/_qt/labeling_widgets.py",130   "sha256": "18d5848385c3a49d99f48dff648c898ea288179d5471fa487b7193d33110a4ab",131   "language": "Python",132   "lines": 521,133   "truncated": false,134   "block": 23,135   "row": 12870136  },137  {138   "path": "src/morphometrics/_gui/_qt/measurement_widgets.py",139   "sha256": "db082647302c425fd79ee2328530ef99c282bced446e14276531d85191a52228",140   "language": "Python",141   "lines": 2,142   "truncated": false,143   "block": 22,144   "row": 25665145  },146  {147   "path": "src/morphometrics/_gui/_qt/multiple_viewer_widget.py",148   "sha256": "c43e0a041ae26f32115bfbc3070493f4fc81bb9a7b1b0e581b17563dfbdc9d2c",149   "language": "Python",150   "lines": 317,151   "truncated": false,152   "block": 23,153   "row": 10629154  },155  {156   "path": "src/morphometrics/_gui/label_curator/_tests/test_label_cleaning.py",157   "sha256": "dda353163054178fe6f2c07c7c6b50ecb35a5bc157dcb204dcb1c4551f0b90b9",158   "language": "Python",159   "lines": 65,160   "truncated": false,161   "block": 23,162   "row": 1990163  },164  {165   "path": "src/morphometrics/_gui/label_curator/_tests/test_label_curator.py",166   "sha256": "da54689807b4c778b55e757aec34cdaa5c11358b2f646b15e4ef578ac47ac212",167   "language": "Python",168   "lines": 43,169   "truncated": false,170   "block": 23,171   "row": 835172  },173  {174   "path": "src/morphometrics/_gui/label_curator/label_cleaning.py",175   "sha256": "d62985d35a8abe5db6074838f760fb8107e2aa4cbe9a8aa07a5e892663e38363",176   "language": "Python",177   "lines": 299,178   "truncated": false,179   "block": 23,180   "row": 10937181  },182  {183   "path": "src/morphometrics/_gui/label_curator/label_curator.py",184   "sha256": "c0d1d39205a31fca17d65ef15c30eb7d9b9effd5161de3c111d834b6e9d29042",185   "language": "Python",186   "lines": 247,187   "truncated": false,188   "block": 23,189   "row": 9530190  },191  {192   "path": "src/morphometrics/_gui/label_curator/label_painting.py",193   "sha256": "d8a010e307220140b3c345a02d55a4244bddfc1c2414a82ca0a8170063dbf7f3",194   "language": "Python",195   "lines": 42,196   "truncated": false,197   "block": 22,198   "row": 29326199  },200  {201   "path": "src/morphometrics/_gui/label_curator/qt_label_curator.py",202   "sha256": "5162a50ad1fce3a5a351c016f4a334f572494c4f44f789add765b7a44cbfb331",203   "language": "Python",204   "lines": 285,205   "truncated": false,206   "block": 23,207   "row": 10387208  },209  {210   "path": "src/morphometrics/_gui/models/_tests/test_annotation_model.py",211   "sha256": "ae03315b35d24ca30dfc31f11e5b901d212e3a155f39db50d8d4c0f0b3de0bc1",212   "language": "Python",213   "lines": 99,214   "truncated": false,215   "block": 23,216   "row": 3442217  },218  {219   "path": "src/morphometrics/_gui/models/_tests/test_labeling_model.py",220   "sha256": "78697e6cb46d17670ffdc60c8e910bec9e20796007069936bd88d1403253e581",221   "language": "Python",222   "lines": 81,223   "truncated": false,224   "block": 23,225   "row": 2911226  },227  {228   "path": "src/morphometrics/_gui/models/annotation_model.py",229   "sha256": "f64c2138db010adb95e3af1f0c5dc4e75d51717e66ee8f5334c679120cf88d7d",230   "language": "Python",231   "lines": 316,232   "truncated": false,233   "block": 23,234   "row": 10548235  },236  {237   "path": "src/morphometrics/_gui/models/labeling_model.py",238   "sha256": "337f91844345d518830a7b8bc4de007344bb0292dd67e3cc75084351b4f18c75",239   "language": "Python",240   "lines": 182,241   "truncated": false,242   "block": 23,243   "row": 7809244  },245  {246   "path": "src/morphometrics/_sample_data.py",247   "sha256": "9387787ec67fa688a5a29e2047add473b76df29cafd046aba8fe8eb7887260aa",248   "language": "Python",249   "lines": 21,250   "truncated": false,251   "block": 22,252   "row": 27899253  },254  {255   "path": "src/morphometrics/_tests/test_sample_data.py",256   "sha256": "a702ca0130cc1664170b187122ac95d29bf043863b51beccca4db9a32766d153",257   "language": "Python",258   "lines": 41,259   "truncated": false,260   "block": 22,261   "row": 29005262  },263  {264   "path": "src/morphometrics/_tests/test_types.py",265   "sha256": "56afa54ce7da6e02b79630c69d3b14cd2b6643d330ad4f29e007a7f7297c78e5",266   "language": "Python",267   "lines": 50,268   "truncated": false,269   "block": 22,270   "row": 29420271  },272  {273   "path": "src/morphometrics/_tests/test_widget.py",274   "sha256": "f816ed8d046874ce947f9084ad6f7c3cca833a53321ae68eb325f149aceb693d",275   "language": "Python",276   "lines": 40,277   "truncated": false,278   "block": 22,279   "row": 29710280  },281  {282   "path": "src/morphometrics/data/__init__.py",283   "sha256": "26ed9ea5e6928ed3965dc1a09c3887c985df5e5e88cad89dcb38594dbe843e17",284   "language": "Python",285   "lines": 2,286   "truncated": false,287   "block": 22,288   "row": 25704289  },290  {291   "path": "src/morphometrics/data/intensity_image.py",292   "sha256": "6e712de2458b97ec54a0619336dfab82825763dae9f91557a84b9727aac99dac",293   "language": "Python",294   "lines": 9,295   "truncated": false,296   "block": 22,297   "row": 26103298  },299  {300   "path": "src/morphometrics/data/label_image.py",301   "sha256": "36b2fc18a437e23a27dac7c9681250b20ef7452435cd2a6afcf742f0d5e6dd60",302   "language": "Python",303   "lines": 89,304   "truncated": false,305   "block": 23,306   "row": 2893307  },308  {309   "path": "src/morphometrics/explore/_tests/_explore_test_utils.py",310   "sha256": "572805b517c56614bdaaf6c81e592ae968955acfa628f839a9faa74111ced23f",311   "language": "Python",312   "lines": 9,313   "truncated": false,314   "block": 22,315   "row": 26023316  },317  {318   "path": "src/morphometrics/explore/_tests/test_cluster.py",319   "sha256": "e5561593a903b65052aa59b750a6019d332585525fae67f005cb307dafc1e98c",320   "language": "Python",321   "lines": 28,322   "truncated": false,323   "block": 22,324   "row": 28898325  },326  {327   "path": "src/morphometrics/explore/_tests/test_dimensionality_reduction.py",328   "sha256": "c810dadf876433a3807f63f62155d92ca343e344920cce1c00a64ad186f93019",329   "language": "Python",330   "lines": 23,331   "truncated": false,332   "block": 22,333   "row": 28139334  },335  {336   "path": "src/morphometrics/explore/_tests/test_explore_utils.py",337   "sha256": "d4acc22d0f86e90bf0864742317c9212c39602440a61df7deaa607b410395477",338   "language": "Python",339   "lines": 12,340   "truncated": false,341   "block": 22,342   "row": 27190343  },344  {345   "path": "src/morphometrics/explore/_tests/test_sample.py",346   "sha256": "720cb66e514ed56db6e97b3c7ebfc3a04f41a1a946e7267a495e2eab4d3d8be1",347   "language": "Python",348   "lines": 98,349   "truncated": false,350   "block": 23,351   "row": 3358352  },353  {354   "path": "src/morphometrics/explore/cluster.py",355   "sha256": "00b21c14fb02401c0624e2448a88683894ae411ab55e567777f6ff35b134d825",356   "language": "Python",357   "lines": 69,358   "truncated": false,359   "block": 23,360   "row": 2581361  },362  {363   "path": "src/morphometrics/explore/dimensionality_reduction.py",364   "sha256": "6affa1c980bef5bd4eebe1be1c7c437cfbfaf74a19d3b5a3ece7699388f776f5",365   "language": "Python",366   "lines": 117,367   "truncated": false,368   "block": 23,369   "row": 5244370  },371  {372   "path": "src/morphometrics/explore/explore_utils.py",373   "sha256": "f908bcb6a092cdb9ac8bbed17f6aeb4e7c10f1a6978e9dcc67613198fdb64a77",374   "language": "Python",375   "lines": 43,376   "truncated": false,377   "block": 22,378   "row": 29608379  },380  {381   "path": "src/morphometrics/explore/sample.py",382   "sha256": "df41e0e6612dda3f5cbf4e9114a5432c0feefce3e83b078698c15199762a5088",383   "language": "Python",384   "lines": 82,385   "truncated": false,386   "block": 23,387   "row": 2059388  },389  {390   "path": "src/morphometrics/label/_tests/test_image_utils.py",391   "sha256": "7925ae6d12ade5e23454d3faae57a49c84e9c0a46beedcb93bde433a2fc06d03",392   "language": "Python",393   "lines": 238,394   "truncated": false,395   "block": 23,396   "row": 9417397  },398  {399   "path": "src/morphometrics/label/_tests/test_stitch.py",400   "sha256": "9b820bd5db08fef80606e3c601419f167c74f67e8c5da4259c3c897fcefe698d",401   "language": "Python",402   "lines": 266,403   "truncated": false,404   "block": 23,405   "row": 9355406  },407  {408   "path": "src/morphometrics/label/image_utils.py",409   "sha256": "abe53c78114300d433596f2a5a4bf07b64ac367480eca5b89afee1e4dbf406e5",410   "language": "Python",411   "lines": 380,412   "truncated": false,413   "block": 23,414   "row": 11472415  },416  {417   "path": "src/morphometrics/label/stitch.py",418   "sha256": "ae067f9378b0ac1a9232740bc76288e5d3481ff27c32058373ec82ba033ebb1e",419   "language": "Python",420   "lines": 398,421   "truncated": false,422   "block": 23,423   "row": 12133424  },425  {426   "path": "src/morphometrics/measure/__init__.py",427   "sha256": "6395347849f876064acea5962bb06259b16b4143ed5d0026b2d6e951b6f43cf8",428   "language": "Python",429   "lines": 18,430   "truncated": false,431   "block": 22,432   "row": 27268433  },434  {435   "path": "src/morphometrics/measure/_tests/test_intensity.py",436   "sha256": "2bcbd87595d6fbf0b512d37c654fa873dc6abf4f977dfaec36836ef731adab22",437   "language": "Python",438   "lines": 246,439   "truncated": false,440   "block": 23,441   "row": 8696442  },443  {444   "path": "src/morphometrics/measure/_tests/test_label.py",445   "sha256": "f7e2a5f82a7e01b974723faf2062d5eaa8673f94f6edf83a8eac185a0d8cb7e3",446   "language": "Python",447   "lines": 127,448   "truncated": false,449   "block": 23,450   "row": 4419451  },452  {453   "path": "src/morphometrics/measure/_tests/test_neighborhood.py",454   "sha256": "4d412c8a87ba8f88a274eef793882d7fc3a0249abc587be032b06c285f69be08",455   "language": "Python",456   "lines": 115,457   "truncated": false,458   "block": 23,459   "row": 5243460  },461  {462   "path": "src/morphometrics/measure/_tests/test_surface.py",463   "sha256": "2f1b46422902a3496e4f21c65d8370776e552d45637dfef7bb76487f12f95b90",464   "language": "Python",465   "lines": 56,466   "truncated": false,467   "block": 23,468   "row": 1384469  },470  {471   "path": "src/morphometrics/measure/intensity.py",472   "sha256": "095fc9c9643c24a1ecd6a63386c963b9900df7d8de1086549d08abbd141704ca",473   "language": "Python",474   "lines": 190,475   "truncated": false,476   "block": 23,477   "row": 8659478  },479  {480   "path": "src/morphometrics/measure/label.py",481   "sha256": "1b99411783910367dc3d075ebdf7b1f63b1e83f4e1b7cd14dcf9b329c1e5d26f",482   "language": "Python",483   "lines": 224,484   "truncated": false,485   "block": 23,486   "row": 9518487  },488  {489   "path": "src/morphometrics/measure/neighborhood.py",490   "sha256": "09a2b39329b0f0c142d11124e21d3f74826b59b4081e9ce72ba884b8749e6a4e",491   "language": "Python",492   "lines": 141,493   "truncated": false,494   "block": 23,495   "row": 6367496  },497  {498   "path": "src/morphometrics/measure/surface.py",499   "sha256": "bf1693c58a31dc2881c4e8c4f5ff7c022d9ea39e11f3a350966ca7f5d29de5e1",500   "language": "Python",501   "lines": 113,502   "truncated": false,503   "block": 23,504   "row": 5483505  },506  {507   "path": "src/morphometrics/skeleton/_tests/conftest.py",508   "sha256": "c889784c5ce7128afe12ccc496fab375c434b59046165188456d79500a8548eb",509   "language": "Python",510   "lines": 72,511   "truncated": false,512   "block": 23,513   "row": 2130514  },515  {516   "path": "src/morphometrics/skeleton/_tests/test_model.py",517   "sha256": "5e82b15914a51dc4c34d90ca11d93044ba8330db959fca1c9703d27d61bf942f",518   "language": "Python",519   "lines": 86,520   "truncated": false,521   "block": 23,522   "row": 3878523  },524  {525   "path": "src/morphometrics/skeleton/constants.py",526   "sha256": "71ccbd8499dadc751490f30066d2771b31fd147729b9be8b58475830f4a23f1d",527   "language": "Python",528   "lines": 8,529   "truncated": false,530   "block": 22,531   "row": 26405532  },533  {534   "path": "src/morphometrics/skeleton/model.py",535   "sha256": "272c66408cab6d11d77e5898c33627ca14de2dba8eb5cff5abe0bde3cab34fc8",536   "language": "Python",537   "lines": 222,538   "truncated": false,539   "block": 23,540   "row": 9312541  },542  {543   "path": "src/morphometrics/types.py",544   "sha256": "688a884785c7e1e05c1b0051284540f9b1b2f70b17149ac63b7701614f1f48fa",545   "language": "Python",546   "lines": 17,547   "truncated": false,548   "block": 22,549   "row": 26678550  },551  {552   "path": "src/morphometrics/utils/_tests/test_anndata_utils.py",553   "sha256": "6b0db65565c4c36df10e48474f9ae7153a1254d41ad4f872cd6760f4784cbf6d",554   "language": "Python",555   "lines": 92,556   "truncated": false,557   "block": 23,558   "row": 3340559  },560  {561   "path": "src/morphometrics/utils/_tests/test_image_utils.py",562   "sha256": "0b8b9427a3e9301fed321e1397ce46214768b29baeaa544ce64d7ab9dba2021e",563   "language": "Python",564   "lines": 64,565   "truncated": false,566   "block": 23,567   "row": 1200568  },569  {570   "path": "src/morphometrics/utils/_tests/test_math_utils.py",571   "sha256": "d10f45f8fb3f94f9bd6592a6253d47fecf402195dcc7c4243b1ff0c4abd1a258",572   "language": "Python",573   "lines": 39,574   "truncated": false,575   "block": 22,576   "row": 29103577  },578  {579   "path": "src/morphometrics/utils/_tests/test_surface_utils.py",580   "sha256": "cd001d631c836394466774e8b57103b3907b514bd1a4dc7810d56d1d94c7dffa",581   "language": "Python",582   "lines": 73,583   "truncated": false,584   "block": 23,585   "row": 1576586  },587  {588   "path": "src/morphometrics/utils/anndata_utils.py",589   "sha256": "61d259e7d8ee370e0148553a900f6b4475ba5e144ed720a39a9570bfa32950e0",590   "language": "Python",591   "lines": 76,592   "truncated": false,593   "block": 23,594   "row": 2097595  },596  {597   "path": "src/morphometrics/utils/environment_utils.py",598   "sha256": "e745b357da5538214b9cd3985b620a1e9e91c8f8f22cc0789ebc8b76a253177e",599   "language": "Python",600   "lines": 11,601   "truncated": false,602   "block": 22,603   "row": 26382604  },605  {606   "path": "src/morphometrics/utils/image_utils.py",607   "sha256": "1daf67bf114c556a8c4960d9b40f582bdafcb871eced85b17e9945851743db87",608   "language": "Python",609   "lines": 35,610   "truncated": false,611   "block": 22,612   "row": 29593613  },614  {615   "path": "src/morphometrics/utils/math_utils.py",616   "sha256": "825b1e251e5d9b0a4098874bcf9f231ce88d6957c7afaa3a68d769eedf8a823b",617   "language": "Python",618   "lines": 34,619   "truncated": false,620   "block": 22,621   "row": 29059622  },623  {624   "path": "src/morphometrics/utils/napari_utils.py",625   "sha256": "ea36e68da0d01833a19bf4195aa7465d5d342712b3ef91860ff90351dc3c23fc",626   "language": "Python",627   "lines": 46,628   "truncated": false,629   "block": 22,630   "row": 29629631  },632  {633   "path": "src/morphometrics/utils/surface_utils.py",634   "sha256": "a7f24954e1b79da5f510634d7e676a8e800b744aec2dfadbd9bc464dc5fa9158",635   "language": "Python",636   "lines": 292,637   "truncated": false,638   "block": 23,639   "row": 10177640  }641 ]642}