OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/itrex-shiny/itrex",4 "url": "https://github.com/iTReX-Shiny/iTReX",5 "host": "github.com",6 "commit": "3d84e7b1fd8f004d45e02ea31b9deb957d011e8a",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file COPYING",9 "redistribution": "yes",10 "files": [11 {12 "path": ".aspell/defaults.R",13 "sha256": "f4bba63c0ea5a1721e51e3946736d7dc105ba14b43567e3dc4ad2e361cc6738e",14 "language": "R",15 "lines": 7,16 "truncated": false,17 "block": 13,18 "row": 78919 },20 {21 "path": "COPYING",22 "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",23 "language": "License",24 "lines": 674,25 "truncated": false,26 "block": 1,27 "row": 223528 },29 {30 "path": "R/DSS.R",31 "sha256": "65fcb323ed78beb75b8bae726d2068a4ae2de58687dc7915d93a873ac9e256dd",32 "language": "R",33 "lines": 210,34 "truncated": false,35 "block": 13,36 "row": 233937 },38 {39 "path": "R/helper_functions.R",40 "sha256": "11695e1d7b50f15fc88ea5547e31e4f42c6265e60ea5ca49d8840eff2e7be929",41 "language": "R",42 "lines": 167,43 "truncated": false,44 "block": 13,45 "row": 208346 },47 {48 "path": "R/iTReX_mod.R",49 "sha256": "5ab9d3d7fde0f2793a4e08dd7a3d600b0dfe6a90dd42ae71033079f5a1138b95",50 "language": "R",51 "lines": 437,52 "truncated": false,53 "block": 13,54 "row": 306855 },56 {57 "path": "R/iTReX_plots.R",58 "sha256": "4126d95357b0a59f3eb61ac7a28c5644de2df2a48f52929fd20aba3e8d1a8f6f",59 "language": "R",60 "lines": 639,61 "truncated": false,62 "block": 13,63 "row": 316064 },65 {66 "path": "R/run.R",67 "sha256": "285f1a20fa6e96720ac970025c4cef44cf7c096e9d104437fa992f5e4ed70d16",68 "language": "R",69 "lines": 192,70 "truncated": false,71 "block": 13,72 "row": 219173 },74 {75 "path": "R/server.R",76 "sha256": "a762724d59ea498584ee1831e76d097957d2d2bc1e713027079e998688fa34b5",77 "language": "R",78 "lines": 1772,79 "truncated": false,80 "block": 13,81 "row": 342182 },83 {84 "path": "R/tools.R",85 "sha256": "e347c90ee2c879f4d85166acacc70fb5ec746cd82f28d1d48b3b19730f4e677d",86 "language": "R",87 "lines": 549,88 "truncated": false,89 "block": 13,90 "row": 304991 },92 {93 "path": "R/ui.R",94 "sha256": "58bb8c70216ceea9529df2a8f4100db138965c79df005eb387d5dc6c2ba82cf8",95 "language": "R",96 "lines": 926,97 "truncated": false,98 "block": 13,99 "row": 3326100 },101 {102 "path": "README.md",103 "sha256": "19d15b13fe1cd9ef8ef06ab363b2a01ee2415e8e156da04492ba11320b065766",104 "language": "Text",105 "lines": 130,106 "truncated": false,107 "block": 13,108 "row": 6635109 },110 {111 "path": "inst/js/tooltip_new.js",112 "sha256": "9d8dc26b0984c4ade91c9a6eb98be713167d7bb6fd6e4f069f7eb2818273b89c",113 "language": "JavaScript",114 "lines": 28,115 "truncated": false,116 "block": 11,117 "row": 11054118 },119 {120 "path": "inst/rmd/Combo_Report.Rmd",121 "sha256": "e6f3bd641cf572ae5217abe3eddc577567e529b4d6bdadaa7c1e3f41277fa504",122 "language": "R",123 "lines": 98,124 "truncated": false,125 "block": 13,126 "row": 1706127 },128 {129 "path": "inst/rmd/DSS_Hits_Waterfall.Rmd",130 "sha256": "bec2c7be1917bf46d785d02a7f479f5c2ba256dfe30c4c26f5bae498418d5443",131 "language": "R",132 "lines": 129,133 "truncated": false,134 "block": 13,135 "row": 1934136 },137 {138 "path": "inst/rmd/DSS_Hits_Waterfall_combo.Rmd",139 "sha256": "cdd37bf4acfcfb9536ee5a1e20972f7559b3409b3ccaffcd6a5c4bddf1486d9a",140 "language": "R",141 "lines": 69,142 "truncated": false,143 "block": 13,144 "row": 1412145 },146 {147 "path": "inst/rmd/DSS_interactive.Rmd",148 "sha256": "9207acfcf95ca0bd8371c61c2cfe197b2eb084df2209808ad2b5df9eb9d03545",149 "language": "R",150 "lines": 15,151 "truncated": false,152 "block": 13,153 "row": 828154 },155 {156 "path": "inst/rmd/HitNet_Report.Rmd",157 "sha256": "784f40ea1c9edf8b4a44bed92fe92dc9964b83323b5f0295e82e844e5c471d8d",158 "language": "R",159 "lines": 18,160 "truncated": false,161 "block": 13,162 "row": 822163 },164 {165 "path": "inst/rmd/Omics_Report.Rmd",166 "sha256": "7d857458e62fd5207e3e4d178b62a6e9bccf0ee3f594fcb81aad4c33c3edaf21",167 "language": "R",168 "lines": 18,169 "truncated": false,170 "block": 13,171 "row": 820172 },173 {174 "path": "inst/rmd/QCmod.Rmd",175 "sha256": "796c24fb8d2c6b9c9eb18c3017f1745bd19f369edc7e6b051f5f93f101439dbd",176 "language": "R",177 "lines": 204,178 "truncated": false,179 "block": 13,180 "row": 2340181 },182 {183 "path": "inst/rmd/cohort_heatmap.Rmd",184 "sha256": "096187c604728887cd370d752c7c90c87c4ee82a38a093c8573fc2c9d576992f",185 "language": "R",186 "lines": 8,187 "truncated": false,188 "block": 13,189 "row": 763190 },191 {192 "path": "inst/rmd/sDSS_Waterfall.Rmd",193 "sha256": "e03a7dfefb120b615be69cee660cda8d5b4476212671f7383ec860aedbaef7d2",194 "language": "R",195 "lines": 89,196 "truncated": false,197 "block": 13,198 "row": 1524199 },200 {201 "path": "inst/shiny/app.R",202 "sha256": "78e6de1b4ba8a3d09c694b39081b78b503a25c5aabf56c47b6926fc6412593cc",203 "language": "R",204 "lines": 9,205 "truncated": false,206 "block": 13,207 "row": 803208 },209 {210 "path": "inst/shiny/tests/shinytest/combo_sample-sep_heatmap_step.R",211 "sha256": "9162e5bec222fa93474be95ba15b83d9f40189b5a82365819fd50e052b94cae7",212 "language": "R",213 "lines": 34,214 "truncated": false,215 "block": 13,216 "row": 1099217 },218 {219 "path": "inst/shiny/tests/shinytest/combo_sample-sep_qc_step.R",220 "sha256": "e755cbecdaf78258a93055c09f20f9280ea4dc365bfa3983a6a1ac4d264a7291",221 "language": "R",222 "lines": 18,223 "truncated": false,224 "block": 13,225 "row": 926226 },227 {228 "path": "inst/shiny/tests/shinytest/combo_sample-sep_xra.R",229 "sha256": "5428c814a6af4044b89d6a2d922a43a69ff841e3c92c511b7aa3b9cfade63d18",230 "language": "R",231 "lines": 21,232 "truncated": false,233 "block": 13,234 "row": 935235 },236 {237 "path": "inst/shiny/tests/shinytest/combo_sample-sep_xra_step.R",238 "sha256": "3a609499f51b4591b1244c8621e038f89505af00b767cc782ee51164642c3162",239 "language": "R",240 "lines": 26,241 "truncated": false,242 "block": 13,243 "row": 984244 },245 {246 "path": "inst/shiny/tests/shinytest/mono_cohort_heatmap.R",247 "sha256": "e9f7ac1be96f962b6d51bbab4cac20e176974507d22419a25c8dd8fd1c75b653",248 "language": "R",249 "lines": 11,250 "truncated": false,251 "block": 13,252 "row": 853253 },254 {255 "path": "inst/shiny/tests/shinytest/mono_cohort_heatmap_Amin0.R",256 "sha256": "a0e398c14178702a2724931f4a6d00ca3b49e6aa96ca023f6209ad3393609b84",257 "language": "R",258 "lines": 12,259 "truncated": false,260 "block": 13,261 "row": 870262 },263 {264 "path": "inst/shiny/tests/shinytest/mono_cohort_heatmap_Amin10.R",265 "sha256": "6ad968f54fcfea0fdfd77e2fe6382022dc4ca7a50fdefbc45cd7ee97f7c508e0",266 "language": "R",267 "lines": 12,268 "truncated": false,269 "block": 13,270 "row": 871271 },272 {273 "path": "inst/shiny/tests/shinytest/mono_cohort_heatmap_Amin25.R",274 "sha256": "6e4068c84cdcd71f4aa8460b1406d4590cdcc5c9af4eb22da6c0cfb3986890e2",275 "language": "R",276 "lines": 13,277 "truncated": false,278 "block": 13,279 "row": 883280 },281 {282 "path": "inst/shiny/tests/shinytest/mono_cohort_heatmap_SF05.R",283 "sha256": "d0d6c5c89eb5a9b851dbc305983443ff3ce945094bddb5b6660dcf38201060cc",284 "language": "R",285 "lines": 25,286 "truncated": false,287 "block": 13,288 "row": 1027289 },290 {291 "path": "inst/shiny/tests/shinytest/mono_cohort_heatmap_identical.R",292 "sha256": "862f38e1a06072e52c7bf37a18a9aee794a81534b7648003043911cabcbff371",293 "language": "R",294 "lines": 11,295 "truncated": false,296 "block": 13,297 "row": 859298 },299 {300 "path": "inst/shiny/tests/shinytest/mono_cohort_qmh_mixed.R",301 "sha256": "adaf60feb96e34ffab1081c1c4c59cba5914338aab5408f9011836617c0b6990",302 "language": "R",303 "lines": 31,304 "truncated": false,305 "block": 13,306 "row": 1061307 },308 {309 "path": "inst/shiny/tests/shinytest/mono_sample-sep_1xlsx_qc-mra.R",310 "sha256": "be81017cd5c1efbcb637d8388afae0c6d075616f9c65577da60d1a5ca223cd6b",311 "language": "R",312 "lines": 19,313 "truncated": false,314 "block": 13,315 "row": 928316 },317 {318 "path": "inst/shiny/tests/shinytest/mono_sample-sep_flat_qc-mra.R",319 "sha256": "cd5112c836d99572721b065d23e69a7802f558851b99420289437fad1da7fd09",320 "language": "R",321 "lines": 19,322 "truncated": false,323 "block": 13,324 "row": 910325 },326 {327 "path": "inst/shiny/tests/shinytest/mono_sample-sep_ima-na_qc-mra.R",328 "sha256": "f08edf221012ea52eb454e3e2a9c0ade43f300c27e4df5af4b5a10a5c595bc71",329 "language": "R",330 "lines": 19,331 "truncated": false,332 "block": 13,333 "row": 918334 },335 {336 "path": "inst/shiny/tests/shinytest/mono_sample_BT-40_hitnet-omics_custom.R",337 "sha256": "dd3c040920c92805ac2a7f019228bfc77a07445c1405fbdebd709adbd4d0bb0e",338 "language": "R",339 "lines": 6,340 "truncated": false,341 "block": 13,342 "row": 773343 },344 {345 "path": "inst/shiny/tests/shinytest/mono_sample_BT-40_hitnet-omics_drugbank.R",346 "sha256": "40df7109d72dcd23c6051980b835a01d6d4f567586c9b840ed8ecf5e78e64776",347 "language": "R",348 "lines": 6,349 "truncated": false,350 "block": 13,351 "row": 772352 },353 {354 "path": "inst/shiny/tests/shinytest/mono_sample_BT-40_mra.R",355 "sha256": "fe1bb22e3275e5875a37a40281e437fd072c94de9bd7235862b3150144f69fd5",356 "language": "R",357 "lines": 16,358 "truncated": false,359 "block": 13,360 "row": 894361 },362 {363 "path": "inst/shiny/tests/shinytest/mono_sample_BT-40_mra_step.R",364 "sha256": "d9404159b771f38c1d787f493430ee9882ff9da0f1d42f9f9cfe0d4450b1ab6b",365 "language": "R",366 "lines": 19,367 "truncated": false,368 "block": 13,369 "row": 932370 },371 {372 "path": "inst/shiny/tests/shinytest/mono_sample_BT-40_omics_drugbank.R",373 "sha256": "f8c4ee3279e6069477512e073306dfd1f5042b382ffd171ce3a8984ae9f34696",374 "language": "R",375 "lines": 6,376 "truncated": false,377 "block": 13,378 "row": 774379 },380 {381 "path": "inst/shiny/tests/shinytest/mono_sample_BT-40_qc.R",382 "sha256": "190f395643fad0e055f051300bf9dd968310e0c56846f0f264e5ed50a69440fe",383 "language": "R",384 "lines": 14,385 "truncated": false,386 "block": 13,387 "row": 869388 },389 {390 "path": "inst/shiny/tests/shinytest/mono_sample_INF-R-153_hitnet-omics_custom.R",391 "sha256": "91c544b238176eb2919c34afa13825ca7d9cdb45c2e015c110649f860f3c86de",392 "language": "R",393 "lines": 6,394 "truncated": false,395 "block": 13,396 "row": 778397 },398 {399 "path": "inst/shiny/tests/shinytest/mono_sample_INF-R-153_hitnet-omics_drugbank.R",400 "sha256": "52c9b57c9ba196619493669654e2e5b29a9bb30230e1dc66b13695d55a0ca250",401 "language": "R",402 "lines": 6,403 "truncated": false,404 "block": 13,405 "row": 776406 },407 {408 "path": "inst/shiny/tests/shinytest/mono_sample_INF-R-153_mra_step.R",409 "sha256": "2c7bcbbe74aad52e9ea09f624c6fafbe39264371e6816631d3118d5d08dbe9d6",410 "language": "R",411 "lines": 19,412 "truncated": false,413 "block": 13,414 "row": 933415 },416 {417 "path": "inst/shiny/tests/shinytest/tabs_home.R",418 "sha256": "9d31774deaeb400925d790fa4845a2240c0ebc350d51f549e99cf1716b06fa27",419 "language": "R",420 "lines": 6,421 "truncated": false,422 "block": 13,423 "row": 762424 },425 {426 "path": "inst/shiny/tests/shinytest/tabs_home_browser.R",427 "sha256": "e1cc8a3c23cc0c3a1ead0a5f1c45077ef6d573ff1ee6e4a85fd7a0139b8ac7f7",428 "language": "R",429 "lines": 6,430 "truncated": false,431 "block": 13,432 "row": 770433 },434 {435 "path": "inst/shiny/tests/shinytest/tabs_home_scale1.R",436 "sha256": "8ef903129379069f30f9d94dcab395e12ab2286e190ff26256b779e2e1859c7b",437 "language": "R",438 "lines": 6,439 "truncated": false,440 "block": 13,441 "row": 767442 },443 {444 "path": "inst/shiny/tests/shinytest/tabs_home_scale2.R",445 "sha256": "1f7c21d2a1731934911954d6c5c816e81d362e135bfad1cb6d14434151cfbe68",446 "language": "R",447 "lines": 6,448 "truncated": false,449 "block": 13,450 "row": 764451 },452 {453 "path": "inst/shiny/tests/shinytest/tabs_other.R",454 "sha256": "a7941ba76f1c1fea0b7fbb01675f725b91895ebc7f440fa8cbbfcc7e41dd6045",455 "language": "R",456 "lines": 6,457 "truncated": false,458 "block": 13,459 "row": 758460 },461 {462 "path": "inst/shiny/tests/shinytest_helpers.R",463 "sha256": "bf11aa47a8fc36c0cd59a58eced36be092fe4ec4f6daf2cb8757c0ac13be8196",464 "language": "R",465 "lines": 257,466 "truncated": false,467 "block": 13,468 "row": 2502469 },470 {471 "path": "inst/shiny/tests/tests.R",472 "sha256": "f5d38c5179e456c3c6c8115207910036a07b1dfc606a971cbbec43249af688f7",473 "language": "R",474 "lines": 6,475 "truncated": false,476 "block": 13,477 "row": 780478 },479 {480 "path": "tests/testthat.R",481 "sha256": "c2ed78551673faeb92817c891891ec88d4b5326795cee372a852ff4aa8713110",482 "language": "R",483 "lines": 1,484 "truncated": false,485 "block": 13,486 "row": 747487 },488 {489 "path": "tests/testthat/test-shiny.R",490 "sha256": "9157041af35e8aaf76dfaa9906f24e3b7d3bb264df02fb56c05d41e68a8ac993",491 "language": "R",492 "lines": 4,493 "truncated": false,494 "block": 13,495 "row": 755496 },497 {498 "path": "vignettes/iTReX-User-Manual.Rmd",499 "sha256": "dadc886a8d4280801be88684498a30bff465867bc80510c49e4cdbaa48d6af91",500 "language": "R",501 "lines": 524,502 "truncated": false,503 "block": 13,504 "row": 3197505 }506 ]507}