OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/sqjin/cellchat",4 "url": "https://github.com/sqjin/CellChat",5 "host": "github.com",6 "commit": "e4f68625b074247d619c2e488d33970cc531e17c",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",14 "language": "License",15 "lines": 674,16 "truncated": false,17 "block": 1,18 "row": 223519 },20 {21 "path": "R/CellChat-package.R",22 "sha256": "a7cade5b763119f0b53202e558acb5ecb10fe8b0ba6b664115e9cf1b9b2630d8",23 "language": "R",24 "lines": 9,25 "truncated": false,26 "block": 4,27 "row": 16628 },29 {30 "path": "R/CellChat_class.R",31 "sha256": "e77266b5b56a3f31fa4b043edc31277e05b276ceb585c9b8c43a052a16068848",32 "language": "R",33 "lines": 891,34 "truncated": false,35 "block": 4,36 "row": 117037 },38 {39 "path": "R/RcppExports.R",40 "sha256": "0dea58c087c7a5c2e6857adbce7e05376502d4e0aa87cd37ea3475e4838634cb",41 "language": "R",42 "lines": 7,43 "truncated": false,44 "block": 4,45 "row": 16946 },47 {48 "path": "R/analysis.R",49 "sha256": "c1010a42a4899ebcf8189cf967221a441dc362302d40a36a3ec720339ed29217",50 "language": "R",51 "lines": 3077,52 "truncated": false,53 "block": 4,54 "row": 124255 },56 {57 "path": "R/data.R",58 "sha256": "19461e4b16897e0bec9429955752cae296488124383c20524ae7804aeb2e6e7a",59 "language": "R",60 "lines": 41,61 "truncated": false,62 "block": 4,63 "row": 29364 },65 {66 "path": "R/database.R",67 "sha256": "4e437c418763db821f8006978ff49780959243829f1c81e8288e4f5b42518459",68 "language": "R",69 "lines": 183,70 "truncated": false,71 "block": 4,72 "row": 75873 },74 {75 "path": "R/modeling.R",76 "sha256": "cd53c81e3918d9e9096ed62e303622a4d19d17436dcd79fc2f5b045187448bcd",77 "language": "R",78 "lines": 985,79 "truncated": false,80 "block": 4,81 "row": 119282 },83 {84 "path": "R/utilities.R",85 "sha256": "66e2702209bcffca5f24fe810646f41c06ec2fc1395be61845529db0f243c0ac",86 "language": "R",87 "lines": 1009,88 "truncated": false,89 "block": 4,90 "row": 118191 },92 {93 "path": "R/visualization.R",94 "sha256": "576ebc73d42b4f8e6146ab6515340e90480a299bac2645b838ef73a059985893",95 "language": "R",96 "lines": 3744,97 "truncated": true,98 "block": 4,99 "row": 1254100 },101 {102 "path": "README.md",103 "sha256": "ffaaf0a81a51b82af97bc5d52465945af725772de8f2c0d98961fe197b543ddf",104 "language": "Text",105 "lines": 45,106 "truncated": false,107 "block": 4,108 "row": 2466109 },110 {111 "path": "src/CellChat_Rcpp.cpp",112 "sha256": "da5b078486914cfe084b0ef138d16b7cf74db8f6300dc8e42a42a117b05ea2f4",113 "language": "C++",114 "lines": 31,115 "truncated": false,116 "block": 3,117 "row": 1186118 },119 {120 "path": "src/RcppExports.cpp",121 "sha256": "fe899c9d6515bee5652a693abc6e9f9ea88ba1a63f5f679f535a7aaa75687cd6",122 "language": "C++",123 "lines": 35,124 "truncated": false,125 "block": 3,126 "row": 1276127 },128 {129 "path": "tutorial/CellChat-vignette.Rmd",130 "sha256": "e2cc7fba7c841aaa3ca971891ab382d09420f46cdc3685cea06240497a50c402",131 "language": "R",132 "lines": 431,133 "truncated": false,134 "block": 4,135 "row": 1159136 },137 {138 "path": "tutorial/CellChat_analysis_of_spatial_imaging_data.Rmd",139 "sha256": "2667fd019aeba6741a31acff7f1ec42ac2851116802c67ed368f3a370f057a76",140 "language": "R",141 "lines": 209,142 "truncated": false,143 "block": 4,144 "row": 1027145 },146 {147 "path": "tutorial/Comparison_analysis_of_multiple_datasets.Rmd",148 "sha256": "3b326ffc6b34c78ffb8b8c0e9b0e602c188c7ed2421c3884e6d6a205045f8e3a",149 "language": "R",150 "lines": 380,151 "truncated": false,152 "block": 4,153 "row": 1136154 },155 {156 "path": "tutorial/Comparison_analysis_of_multiple_datasets_with_different_cellular_compositions.Rmd",157 "sha256": "5ff90ed39a2ea82fe402b1c440913fe84af5b2b6411872e28cc2e9045d382326",158 "language": "R",159 "lines": 123,160 "truncated": false,161 "block": 4,162 "row": 777163 },164 {165 "path": "tutorial/Interface_with_other_single-cell_analysis_toolkits.Rmd",166 "sha256": "0662325c69a6fae190f923daa8289d3925958ca6c69cc5c6e068862bd4f145a1",167 "language": "R",168 "lines": 94,169 "truncated": false,170 "block": 4,171 "row": 678172 },173 {174 "path": "tutorial/Update-CellChatDB.Rmd",175 "sha256": "357a5b2d47d71de2b0d68d84c213bf5d49ed6f9349b07db06838e2ffff6a6a4b",176 "language": "R",177 "lines": 84,178 "truncated": false,179 "block": 4,180 "row": 579181 }182 ]183}