OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/juanfsantana/dff-seq-snakemake",4 "url": "https://github.com/JuanFSantana/DFF-Seq-snakemake/tree/v1.0.2",5 "host": "github.com",6 "commit": "cb146c5c089298c371d13c0c8736f654c345477e",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "eb990ab243d5405e78867189dc15d1d7c4d2d31070a6cee6fa8e6114a7f5c8ef",14 "language": "License",15 "lines": 21,16 "truncated": false,17 "block": 19,18 "row": 424519 },20 {21 "path": "README.md",22 "sha256": "61ebd2c954c7e5506a48190a45ca4ba0c285fb83c84cdc50c24a469b2e00ebe3",23 "language": "Text",24 "lines": 104,25 "truncated": false,26 "block": 19,27 "row": 1610528 },29 {30 "path": "workflow/scripts/dff-dedup.cpp",31 "sha256": "c2f766caee21c6cf7e7c871627209fb00ff3388faa811a6b58c6e50a680dc3d0",32 "language": "C++",33 "lines": 246,34 "truncated": false,35 "block": 19,36 "row": 90237 },38 {39 "path": "workflow/scripts/library_size_norm.py",40 "sha256": "046003303a641399245a3c8d886257f1bc62281ce61d382ddaac213ae4dc0980",41 "language": "Python",42 "lines": 46,43 "truncated": false,44 "block": 19,45 "row": 939246 },47 {48 "path": "workflow/scripts/spikein.py",49 "sha256": "deef43f0502ab2b3adb0d4c89826719ae2658b0fa95e3cca401b594e85866a91",50 "language": "Python",51 "lines": 61,52 "truncated": false,53 "block": 19,54 "row": 997155 },56 {57 "path": "workflow/setup_environment.py",58 "sha256": "56831d1a32ff5fc2657e3d88fcd0e58ea9be94b6c286e4c096a33d289455ec17",59 "language": "Python",60 "lines": 55,61 "truncated": false,62 "block": 19,63 "row": 997464 },65 {66 "path": "workflow/tools/bedtools2/scripts/makeBashScripts.py",67 "sha256": "1387082b6af2f84af4c197443301c5fa1699624bbd1edafa8e0789a4adeb8978",68 "language": "Python",69 "lines": 61,70 "truncated": false,71 "block": 15,72 "row": 1096473 },74 {75 "path": "workflow/tools/bedtools2/scripts/vcfsort.sh",76 "sha256": "9ebd63ca1169559fc8f85a2a8c9147320c5d99631f5678259bb5a6724aa36707",77 "language": "Shell",78 "lines": 13,79 "truncated": false,80 "block": 16,81 "row": 502782 },83 {84 "path": "workflow/tools/bedtools2/src/annotateBed/annotateBed.cpp",85 "sha256": "5c11b532ba2f78d2e9bc49d7514ebe3fe94e6638eb160c779c5ac2066e99d4ff",86 "language": "C++",87 "lines": 208,88 "truncated": false,89 "block": 19,90 "row": 86291 },92 {93 "path": "workflow/tools/bedtools2/src/annotateBed/annotateBed.h",94 "sha256": "b6d2dc527ba0e5713dacab20f52ce4097840207f52ea31949e1a02b8a857622d",95 "language": "C/C++",96 "lines": 71,97 "truncated": false,98 "block": 14,99 "row": 4225100 },101 {102 "path": "workflow/tools/bedtools2/src/annotateBed/annotateMain.cpp",103 "sha256": "df0f708ec94561e49dcb6042bf67342f743b7112ea1a5af7d1ac921d8d19e5f1",104 "language": "C++",105 "lines": 169,106 "truncated": false,107 "block": 14,108 "row": 2352109 },110 {111 "path": "workflow/tools/bedtools2/src/bamToBed/bamToBed.cpp",112 "sha256": "400c432aa4dfea5faf9cf93577224b290b6c42ff08f47193c4fde1947d3418af",113 "language": "C++",114 "lines": 709,115 "truncated": false,116 "block": 19,117 "row": 1029118 },119 {120 "path": "workflow/tools/bedtools2/src/bamToFastq/bamToFastq.cpp",121 "sha256": "dac8c606c0da6c5332b0b49c347090f33a28b11b577e9e950b637cd2cd36c4bb",122 "language": "C++",123 "lines": 327,124 "truncated": false,125 "block": 19,126 "row": 923127 },128 {129 "path": "workflow/tools/bedtools2/src/bamToFastq/bamToFastq.h",130 "sha256": "6a500464303739f6994c7e436ae585aafd7cff917d0a83713d759cb2fa9b8ba5",131 "language": "C/C++",132 "lines": 58,133 "truncated": false,134 "block": 19,135 "row": 1332136 },137 {138 "path": "workflow/tools/bedtools2/src/bamToFastq/bamToFastqMain.cpp",139 "sha256": "cfb6f71d19c72a9e9b63a40503a41e3579237c76c2f20b178996396cc119cd34",140 "language": "C++",141 "lines": 143,142 "truncated": false,143 "block": 19,144 "row": 748145 },146 {147 "path": "workflow/tools/bedtools2/src/bed12ToBed6/bed12ToBed6.cpp",148 "sha256": "78a94b377283ade6c45cf240609ec981f691f520f15f94e25d5d4ceba0d48267",149 "language": "C++",150 "lines": 166,151 "truncated": false,152 "block": 19,153 "row": 780154 },155 {156 "path": "workflow/tools/bedtools2/src/bedToBam/bedToBam.cpp",157 "sha256": "bed27e5a39d15631631d15e78f532cafac7be46f441417e27e3f083cd7e4c7c5",158 "language": "C++",159 "lines": 355,160 "truncated": false,161 "block": 19,162 "row": 930163 },164 {165 "path": "workflow/tools/bedtools2/src/bedToIgv/bedToIgv.cpp",166 "sha256": "77edacdd6e8d514d3f0e890342dbb43d123c6be454f2db8a00660d91e27d4316",167 "language": "C++",168 "lines": 263,169 "truncated": false,170 "block": 14,171 "row": 2703172 },173 {174 "path": "workflow/tools/bedtools2/src/bedpeToBam/bedpeToBam.cpp",175 "sha256": "309625c2671b42724232404f50343a39110c473700a6d5e3df8949550fd1bb1c",176 "language": "C++",177 "lines": 341,178 "truncated": false,179 "block": 14,180 "row": 2793181 },182 {183 "path": "workflow/tools/bedtools2/src/bedtools.cpp",184 "sha256": "9752bdd427b6d4d7acc6420f984bf626de983b6a88c75524e6b5201d8cbf2ab9",185 "language": "C++",186 "lines": 335,187 "truncated": false,188 "block": 19,189 "row": 961190 },191 {192 "path": "workflow/tools/bedtools2/src/closestFile/closestFile.cpp",193 "sha256": "cf1319fb0c95816bcdf8d3308d6a57301d9ddd75171ff680d6bafbb32d3204f6",194 "language": "C++",195 "lines": 35,196 "truncated": false,197 "block": 14,198 "row": 1118199 },200 {201 "path": "workflow/tools/bedtools2/src/closestFile/closestFile.h",202 "sha256": "0922416bd99ef0ea56814dc465c5eaf5ea4ddb19f88e68ab17e9682554f64c34",203 "language": "C/C++",204 "lines": 32,205 "truncated": false,206 "block": 14,207 "row": 3740208 },209 {210 "path": "workflow/tools/bedtools2/src/closestFile/closestHelp.cpp",211 "sha256": "adcc56e818e15593c6b1ffd1e933fee920269d0a2486a488bddc1ebcfe73d074",212 "language": "C++",213 "lines": 85,214 "truncated": false,215 "block": 14,216 "row": 2268217 },218 {219 "path": "workflow/tools/bedtools2/src/clusterBed/clusterBed.cpp",220 "sha256": "ce796549150be22234791a2c29e44bfdd1c7ad87efadc37fb3ce3da068c9e98d",221 "language": "C++",222 "lines": 120,223 "truncated": false,224 "block": 19,225 "row": 716226 },227 {228 "path": "workflow/tools/bedtools2/src/clusterBed/clusterBed.h",229 "sha256": "d9fa753abf7fd1c88c1b7f7bc965b850351ef46c75559d907404dd81e2fede33",230 "language": "C/C++",231 "lines": 47,232 "truncated": false,233 "block": 14,234 "row": 3958235 },236 {237 "path": "workflow/tools/bedtools2/src/clusterBed/clusterMain.cpp",238 "sha256": "2f1aca88e0f4e952f5dab37ab70b8dd02aef17391e0926efbd3aef9ff5b1506a",239 "language": "C++",240 "lines": 124,241 "truncated": false,242 "block": 14,243 "row": 1977244 },245 {246 "path": "workflow/tools/bedtools2/src/complementFile/complementFile.cpp",247 "sha256": "b2330e9c93eea7267985763e0833cdd98440cd7214c728fcd376a8e751faa56d",248 "language": "C++",249 "lines": 140,250 "truncated": false,251 "block": 19,252 "row": 746253 },254 {255 "path": "workflow/tools/bedtools2/src/complementFile/complementFile.h",256 "sha256": "2fa869add2e78d1d7eccc492da4420a74d01c597ce0b294b72a6f5c5979144c3",257 "language": "C/C++",258 "lines": 55,259 "truncated": false,260 "block": 19,261 "row": 1310262 },263 {264 "path": "workflow/tools/bedtools2/src/complementFile/complementHelp.cpp",265 "sha256": "93e01a8ec14178717c3a0f3f5ac9da15c40325998f7413a8e95cb9a0f4f4c147",266 "language": "C++",267 "lines": 38,268 "truncated": false,269 "block": 19,270 "row": 613271 },272 {273 "path": "workflow/tools/bedtools2/src/coverageFile/coverageFile.cpp",274 "sha256": "beeffac75c78fa6c425f2eafb60c34e54f5d98bac94628a67c7dea2c6afcc930",275 "language": "C++",276 "lines": 248,277 "truncated": false,278 "block": 19,279 "row": 825280 },281 {282 "path": "workflow/tools/bedtools2/src/coverageFile/coverageFile.h",283 "sha256": "223b9bb95e69c5597b0c964cc32ae30b61c19b806bccb7e6a19f04ac52110832",284 "language": "C/C++",285 "lines": 57,286 "truncated": false,287 "block": 19,288 "row": 1362289 },290 {291 "path": "workflow/tools/bedtools2/src/coverageFile/coverageHelp.cpp",292 "sha256": "6fcd44ee955571e3fd326e6231cdab14c036173e80035e2cedbe9e287021bdfb",293 "language": "C++",294 "lines": 50,295 "truncated": false,296 "block": 14,297 "row": 1643298 },299 {300 "path": "workflow/tools/bedtools2/src/expand/expand.cpp",301 "sha256": "6ab487616cc9ca7fdcfcbdb145b62daab573dabbc61053bdcf66a774487739f4",302 "language": "C++",303 "lines": 264,304 "truncated": false,305 "block": 14,306 "row": 2656307 },308 {309 "path": "workflow/tools/bedtools2/src/fastaFromBed/fastaFromBed.cpp",310 "sha256": "5c8fbacd05611778d928fbbacee92f47d664a3087b5ba874d9138cdc8dd4be38",311 "language": "C++",312 "lines": 193,313 "truncated": false,314 "block": 19,315 "row": 815316 },317 {318 "path": "workflow/tools/bedtools2/src/fastaFromBed/fastaFromBed.h",319 "sha256": "1017e6c4872e1e5396f995a863e8fa4869ff410e28bca5d18bf67b1556c18d87",320 "language": "C/C++",321 "lines": 67,322 "truncated": false,323 "block": 19,324 "row": 1414325 },326 {327 "path": "workflow/tools/bedtools2/src/fastaFromBed/fastaFromBedMain.cpp",328 "sha256": "4ed0d6bb48f9339829666967aaf00d9ff12b1dc653e83c49c554abfca664c4bf",329 "language": "C++",330 "lines": 182,331 "truncated": false,332 "block": 19,333 "row": 804334 },335 {336 "path": "workflow/tools/bedtools2/src/fisher/fisher.cpp",337 "sha256": "320159921d2cd016e14877c8c9c60a2a1a4ab1af5cf4a1b57309cc9ecf447542",338 "language": "C++",339 "lines": 125,340 "truncated": false,341 "block": 19,342 "row": 751343 },344 {345 "path": "workflow/tools/bedtools2/src/fisher/fisher.h",346 "sha256": "93294212dfa5d01eae88f29c8b11e8a6334c78de0dcd5d3608cdeacbfe150e61",347 "language": "C/C++",348 "lines": 37,349 "truncated": false,350 "block": 14,351 "row": 3775352 },353 {354 "path": "workflow/tools/bedtools2/src/fisher/fisherHelp.cpp",355 "sha256": "b9a48c9219ba7b045a306d6f44a5674a85f041fca149c6aff923c8d2307e3a49",356 "language": "C++",357 "lines": 25,358 "truncated": false,359 "block": 14,360 "row": 1165361 },362 {363 "path": "workflow/tools/bedtools2/src/fisher/kfunc.cpp",364 "sha256": "4619f2bead001a0fa543b7bb4535a3a5294ef93cbb95d6b280d1780e447befdf",365 "language": "C++",366 "lines": 249,367 "truncated": false,368 "block": 14,369 "row": 2590370 },371 {372 "path": "workflow/tools/bedtools2/src/fisher/kfunc.h",373 "sha256": "24f8ca29304e3d74e2d10c18f4f08b7fa54a1bb4d90f352c70a17d33e4c74dba",374 "language": "C/C++",375 "lines": 40,376 "truncated": false,377 "block": 14,378 "row": 3931379 },380 {381 "path": "workflow/tools/bedtools2/src/flankBed/flankBed.cpp",382 "sha256": "25eb4f34dc12ba78ff0b6a88c7e94cd440f151a7648436739fd37ad0d6bd1269",383 "language": "C++",384 "lines": 188,385 "truncated": false,386 "block": 19,387 "row": 808388 },389 {390 "path": "workflow/tools/bedtools2/src/flankBed/flankBed.h",391 "sha256": "accbbc9621e980fdf8f959a9b59f0c83d227f19d76efcc855dd5f0f4b1c8f826",392 "language": "C/C++",393 "lines": 66,394 "truncated": false,395 "block": 14,396 "row": 4123397 },398 {399 "path": "workflow/tools/bedtools2/src/flankBed/flankBedMain.cpp",400 "sha256": "2870434b68f547931a74a6b54ce07cb6e20126bac44745adf84d6a3c94090e89",401 "language": "C++",402 "lines": 201,403 "truncated": false,404 "block": 14,405 "row": 2569406 },407 {408 "path": "workflow/tools/bedtools2/src/genomeCoverageBed/genomeCoverageBed.cpp",409 "sha256": "f5fe520b3ef949e93ca97fccac53adbeb4dc46a4e91f748759dbcb34fa8f3bd3",410 "language": "C++",411 "lines": 524,412 "truncated": false,413 "block": 19,414 "row": 997415 },416 {417 "path": "workflow/tools/bedtools2/src/genomeCoverageBed/genomeCoverageBed.h",418 "sha256": "68bf4d6d61b244b3ae6fc0ff8ff4f9481386d729083434befe5c6b08c33b2d58",419 "language": "C/C++",420 "lines": 109,421 "truncated": false,422 "block": 19,423 "row": 1825424 },425 {426 "path": "workflow/tools/bedtools2/src/genomeCoverageBed/genomeCoverageMain.cpp",427 "sha256": "5d1bc8c17229b51ace0bde28a5b1233d10bcc80b63430b784d3d137117bb38fd",428 "language": "C++",429 "lines": 339,430 "truncated": false,431 "block": 14,432 "row": 2966433 },434 {435 "path": "workflow/tools/bedtools2/src/getOverlap/getOverlap.cpp",436 "sha256": "27a00cdc00cd2992685f45dfa8a55a87119e1681d14827d7e802abfce0c57bf0",437 "language": "C++",438 "lines": 199,439 "truncated": false,440 "block": 19,441 "row": 826442 },443 {444 "path": "workflow/tools/bedtools2/src/groupBy/groupBy.cpp",445 "sha256": "bc4d92d4b91c48ca2ce32ff868dd1d712bc672f3be5e275757a4a0f387440851",446 "language": "C++",447 "lines": 157,448 "truncated": false,449 "block": 19,450 "row": 700451 },452 {453 "path": "workflow/tools/bedtools2/src/groupBy/groupBy.h",454 "sha256": "97d76c818c96d2f0f0c888cdbd015f41a4610b32e9457c407d71856e2dfd2953",455 "language": "C/C++",456 "lines": 41,457 "truncated": false,458 "block": 14,459 "row": 3877460 },461 {462 "path": "workflow/tools/bedtools2/src/groupBy/groupByHelp.cpp",463 "sha256": "1bae789d9a82bd2f6d22d60772b1b51cd85b94c6c237cb42ad5c0937b171d266",464 "language": "C++",465 "lines": 92,466 "truncated": false,467 "block": 14,468 "row": 2367469 },470 {471 "path": "workflow/tools/bedtools2/src/intersectFile/intersectFile.cpp",472 "sha256": "60ef10751bf7624f7b073849939d2d206dfc70b7c54c2852c288c3c81e7e749f",473 "language": "C++",474 "lines": 128,475 "truncated": false,476 "block": 19,477 "row": 679478 },479 {480 "path": "workflow/tools/bedtools2/src/intersectFile/intersectFile.h",481 "sha256": "501f72d2d208f431fc5e9cea21be2b684a644e9a25edda1f01b5125245923c10",482 "language": "C/C++",483 "lines": 50,484 "truncated": false,485 "block": 14,486 "row": 4065487 },488 {489 "path": "workflow/tools/bedtools2/src/intersectFile/intersectHelp.cpp",490 "sha256": "334d8418ec1439d3a83be9cb8ad715eddd865592166a1d7978c4d7ac67b7de4c",491 "language": "C++",492 "lines": 44,493 "truncated": false,494 "block": 14,495 "row": 1403496 },497 {498 "path": "workflow/tools/bedtools2/src/jaccard/jaccard.cpp",499 "sha256": "7aa9d3cfec6c61b592eb4339f4a45433500bcd52307b6a531add25116c08f830",500 "language": "C++",501 "lines": 78,502 "truncated": false,503 "block": 19,504 "row": 638505 },506 {507 "path": "workflow/tools/bedtools2/src/jaccard/jaccard.h",508 "sha256": "9099d4b0830d78c934dd0f77182fd02fb205dfc17489239075b522e198936237",509 "language": "C/C++",510 "lines": 41,511 "truncated": false,512 "block": 14,513 "row": 3883514 },515 {516 "path": "workflow/tools/bedtools2/src/jaccard/jaccardHelp.cpp",517 "sha256": "a52f405d783d2d6dabd5544ba22f26f6b6c08a69884022e54b01c62b7d8e86cd",518 "language": "C++",519 "lines": 36,520 "truncated": false,521 "block": 14,522 "row": 1277523 },524 {525 "path": "workflow/tools/bedtools2/src/linksBed/linksBed.cpp",526 "sha256": "807959c9fd0f896caace103d0a72f362736739ce771ec0465f6a9446b15dac3f",527 "language": "C++",528 "lines": 119,529 "truncated": false,530 "block": 14,531 "row": 1827532 },533 {534 "path": "workflow/tools/bedtools2/src/linksBed/linksBed.h",535 "sha256": "20e520d956c962b3472864fac05ad852a0fe90166a25013950f7ec59189d8cb1",536 "language": "C/C++",537 "lines": 44,538 "truncated": false,539 "block": 14,540 "row": 3936541 },542 {543 "path": "workflow/tools/bedtools2/src/linksBed/linksMain.cpp",544 "sha256": "f53f28ff3927cc074a6dd22fb5c7a671f49e63e5858c575daa89467236041e6d",545 "language": "C++",546 "lines": 127,547 "truncated": false,548 "block": 14,549 "row": 2040550 },551 {552 "path": "workflow/tools/bedtools2/src/mapFile/mapFile.cpp",553 "sha256": "b6a7242bd30ddb57f7a09bf175d72d5c00e37676307cd3da85bca26bfb2b8183",554 "language": "C++",555 "lines": 29,556 "truncated": false,557 "block": 14,558 "row": 1059559 },560 {561 "path": "workflow/tools/bedtools2/src/mapFile/mapFile.h",562 "sha256": "39f6ecd101d318cfb48f66db09130db54f827fbd1629dff8b58a0aeb98e65ab9",563 "language": "C/C++",564 "lines": 28,565 "truncated": false,566 "block": 14,567 "row": 3689568 },569 {570 "path": "workflow/tools/bedtools2/src/mapFile/mapHelp.cpp",571 "sha256": "ac9e41d89d27d30ef065530653ac8f9bb2ab6eb0c0d364b9354ec19061ce374f",572 "language": "C++",573 "lines": 32,574 "truncated": false,575 "block": 14,576 "row": 1146577 },578 {579 "path": "workflow/tools/bedtools2/src/maskFastaFromBed/maskFastaFromBed.cpp",580 "sha256": "95438abc2442669a6ab91be70c19fe554b20e0f40fa42d720a26b9f779bcc9b8",581 "language": "C++",582 "lines": 160,583 "truncated": false,584 "block": 19,585 "row": 791586 },587 {588 "path": "workflow/tools/bedtools2/src/maskFastaFromBed/maskFastaFromBed.h",589 "sha256": "b2294c30ca7984936965be36a20f8a3520e1173e4ee9332e2c8ed8939c142bc0",590 "language": "C/C++",591 "lines": 59,592 "truncated": false,593 "block": 19,594 "row": 1356595 },596 {597 "path": "workflow/tools/bedtools2/src/maskFastaFromBed/maskFastaFromBedMain.cpp",598 "sha256": "d7e3d1f1fdca541eeaf2270f69b7dbe32f799aea11ecd9458b95ec698be55ef6",599 "language": "C++",600 "lines": 149,601 "truncated": false,602 "block": 14,603 "row": 2162604 },605 {606 "path": "workflow/tools/bedtools2/src/mergeFile/mergeFile.cpp",607 "sha256": "53c7036257bd79a6ff6d82d0d35680f362f026cf3cb71239ff58267d1da182c3",608 "language": "C++",609 "lines": 46,610 "truncated": false,611 "block": 14,612 "row": 1163613 },614 {615 "path": "workflow/tools/bedtools2/src/mergeFile/mergeFile.h",616 "sha256": "e58127bf1976e9a3f9d4d678ec81daeb3b771ef86c3586b7081098885acf1d2a",617 "language": "C/C++",618 "lines": 42,619 "truncated": false,620 "block": 14,621 "row": 3796622 },623 {624 "path": "workflow/tools/bedtools2/src/mergeFile/mergeHelp.cpp",625 "sha256": "58be3c601d195da3ee1b912f4fe5052f35937c88c58530bd7e19a2d4532bced8",626 "language": "C++",627 "lines": 44,628 "truncated": false,629 "block": 14,630 "row": 1577631 },632 {633 "path": "workflow/tools/bedtools2/src/multiBamCov/multiBamCov.cpp",634 "sha256": "0459f040526971ff289108a392de3da17ab9d3aeb67a9e73f55767394a8b6fdc",635 "language": "C++",636 "lines": 238,637 "truncated": false,638 "block": 19,639 "row": 882640 },641 {642 "path": "workflow/tools/bedtools2/src/multiBamCov/multiBamCov.h",643 "sha256": "c386bc3c09d8b420da039e4f805fc1dfdf450ba08c1acc3977010dd2b983a4dc",644 "language": "C/C++",645 "lines": 74,646 "truncated": false,647 "block": 14,648 "row": 4282649 },650 {651 "path": "workflow/tools/bedtools2/src/multiBamCov/multiBamCovMain.cpp",652 "sha256": "99dd070e8d40b378ab243741f5d0e5b41a93f6fb33fe85359fbf0026b66e8cef",653 "language": "C++",654 "lines": 191,655 "truncated": false,656 "block": 14,657 "row": 2501658 },659 {660 "path": "workflow/tools/bedtools2/src/multiIntersectBed/multiIntersectBed.cpp",661 "sha256": "7321fdc73fd96d96d1774cef6c2885e584cc2140995822513298e8e24b75703d",662 "language": "C++",663 "lines": 315,664 "truncated": false,665 "block": 14,666 "row": 2692667 },668 {669 "path": "workflow/tools/bedtools2/src/multiIntersectBed/multiIntersectBed.h",670 "sha256": "59fe84f72c4b78e4d2da8e3997f98eeb261b0eb22260c2e13bec098f66c8d8e1",671 "language": "C/C++",672 "lines": 115,673 "truncated": false,674 "block": 14,675 "row": 4776676 },677 {678 "path": "workflow/tools/bedtools2/src/multiIntersectBed/multiIntersectBedMain.cpp",679 "sha256": "d9279907a924b4aa6db18eafcafca69d962aea3ca34d3efbcecaac17a9719025",680 "language": "C++",681 "lines": 297,682 "truncated": false,683 "block": 14,684 "row": 2705685 },686 {687 "path": "workflow/tools/bedtools2/src/nekSandbox1/FormatGuess.h",688 "sha256": "78d3f7397bab627812f75b3fc1259daf791e22fca2871e91b3cd4c75847e47df",689 "language": "C/C++",690 "lines": 76,691 "truncated": false,692 "block": 14,693 "row": 4081694 },695 {696 "path": "workflow/tools/bedtools2/src/nekSandbox1/nekSandboxMain.cpp",697 "sha256": "ea36acfc836813b5211e3f1355cff088ec7fb05b4a6d5f40187939226362d182",698 "language": "C++",699 "lines": 352,700 "truncated": false,701 "block": 14,702 "row": 2613703 },704 {705 "path": "workflow/tools/bedtools2/src/nucBed/LargeFileSupport.h",706 "sha256": "c098617514231d6ed34c8f8208dd604c321e6218575f971ca8dc84108741296c",707 "language": "C/C++",708 "lines": 13,709 "truncated": false,710 "block": 14,711 "row": 3623712 },713 {714 "path": "workflow/tools/bedtools2/src/nucBed/nucBed.cpp",715 "sha256": "69e00c75073c7aeef3120e26ad51dfff1073bdeca8c12c7416f9e516b7da5f8e",716 "language": "C++",717 "lines": 157,718 "truncated": false,719 "block": 19,720 "row": 784721 },722 {723 "path": "workflow/tools/bedtools2/src/nucBed/nucBed.h",724 "sha256": "5604e4c91a629c36a5b37d89f08b233ceace92e467933d7218292394b0fb5bd8",725 "language": "C/C++",726 "lines": 57,727 "truncated": false,728 "block": 19,729 "row": 1324730 },731 {732 "path": "workflow/tools/bedtools2/src/nucBed/nucBedMain.cpp",733 "sha256": "86c18e89827614d9ecccb90db22c01f9b1c8bc9fdfa2e1ddbcc16ab4fc0711ad",734 "language": "C++",735 "lines": 165,736 "truncated": false,737 "block": 14,738 "row": 2263739 },740 {741 "path": "workflow/tools/bedtools2/src/pairToBed/pairToBed.cpp",742 "sha256": "99bea1ecb0def1ed347c47d448cce9374c4d65cc6083b1ecc6642a18ad506187",743 "language": "C++",744 "lines": 534,745 "truncated": false,746 "block": 19,747 "row": 1000748 },749 {750 "path": "workflow/tools/bedtools2/src/pairToBed/pairToBed.h",751 "sha256": "87a82de9499c4c8c154c2aa49e1f0f3badb26725eb3420efbc25ac4d653805c4",752 "language": "C/C++",753 "lines": 161,754 "truncated": false,755 "block": 14,756 "row": 5357757 },758 {759 "path": "workflow/tools/bedtools2/src/pairToBed/pairToBedMain.cpp",760 "sha256": "612c17c16a17df4d16d39ca3271ee5c0f797490b8c1572700f6ca1bdb6c59254",761 "language": "C++",762 "lines": 235,763 "truncated": false,764 "block": 14,765 "row": 2753766 },767 {768 "path": "workflow/tools/bedtools2/src/pairToPair/pairToPair.cpp",769 "sha256": "ffbfa4fe8dc00b22461f8f6d7eb795164405c4b1e650df297f83daf930c5851f",770 "language": "C++",771 "lines": 219,772 "truncated": false,773 "block": 19,774 "row": 866775 },776 {777 "path": "workflow/tools/bedtools2/src/pairToPair/pairToPair.h",778 "sha256": "994fe69ebf0929588386bc890094e10d89013742fdffe52052223025be6f6327",779 "language": "C/C++",780 "lines": 76,781 "truncated": false,782 "block": 14,783 "row": 4339784 },785 {786 "path": "workflow/tools/bedtools2/src/pairToPair/pairToPairMain.cpp",787 "sha256": "900359e82805f754bc27204ca8a18644d13ff11a89a6a141f19248f11444692c",788 "language": "C++",789 "lines": 189,790 "truncated": false,791 "block": 14,792 "row": 2519793 },794 {795 "path": "workflow/tools/bedtools2/src/randomBed/randomBed.cpp",796 "sha256": "e990238f5a5e1d5426e9f7862ebebab7a6beafd48a4346fe26e4fe395c737391",797 "language": "C++",798 "lines": 79,799 "truncated": false,800 "block": 19,801 "row": 663802 },803 {804 "path": "workflow/tools/bedtools2/src/randomBed/randomBed.h",805 "sha256": "6b8fcf1e4cad92089f9752a10971d53dd1b9efd1f1c0fd263fc4f8d090a741e4",806 "language": "C/C++",807 "lines": 56,808 "truncated": false,809 "block": 19,810 "row": 1298811 },812 {813 "path": "workflow/tools/bedtools2/src/randomBed/randomBedMain.cpp",814 "sha256": "d5624771983e60814cc1f5765eefde436a7cdde87e6de5bf868eccb9a5a6f7c8",815 "language": "C++",816 "lines": 148,817 "truncated": false,818 "block": 19,819 "row": 767820 },821 {822 "path": "workflow/tools/bedtools2/src/regressTest/RegressTest.cpp",823 "sha256": "f72b9b1728db3a1c0a2f54dc18c8033dc10bcb215e6a9ddf2e3383cd9379edcf",824 "language": "C++",825 "lines": 664,826 "truncated": false,827 "block": 14,828 "row": 3168829 },830 {831 "path": "workflow/tools/bedtools2/src/regressTest/RegressTest.h",832 "sha256": "b55a574544374bb0e5cccbf532b02a9e6fe64791fb4a4ab70eb50118ee0fd91c",833 "language": "C/C++",834 "lines": 94,835 "truncated": false,836 "block": 14,837 "row": 4566838 },839 {840 "path": "workflow/tools/bedtools2/src/regressTest/regressTestMain.cpp",841 "sha256": "3ba0746d6d56e39f66c29cc8b182a47a29eb850b73e60d8ce83fe0616a41af06",842 "language": "C++",843 "lines": 67,844 "truncated": false,845 "block": 14,846 "row": 1425847 },848 {849 "path": "workflow/tools/bedtools2/src/reldist/reldist.cpp",850 "sha256": "902ff1fd8dcd97004ad6fd15b25b95c3953a704edae7a17d25aab20a79f3691c",851 "language": "C++",852 "lines": 169,853 "truncated": false,854 "block": 19,855 "row": 764856 },857 {858 "path": "workflow/tools/bedtools2/src/reldist/reldist.h",859 "sha256": "304964f3335a265902d747efaec36dedf4d11c15daa2817d98ca5d3fdfacda39",860 "language": "C/C++",861 "lines": 74,862 "truncated": false,863 "block": 19,864 "row": 1395865 },866 {867 "path": "workflow/tools/bedtools2/src/reldist/reldistMain.cpp",868 "sha256": "dc6c93b8facb107f416f8f514bf96b484a613ac1ab9e59311811b9ad415c31a2",869 "language": "C++",870 "lines": 136,871 "truncated": false,872 "block": 19,873 "row": 719874 },875 {876 "path": "workflow/tools/bedtools2/src/sampleFile/sampleFile.cpp",877 "sha256": "64bedfaec2fb7ee1f31ba24e46764b73bb8d144c7844be3d287b4b718b3b7ec4",878 "language": "C++",879 "lines": 114,880 "truncated": false,881 "block": 14,882 "row": 1748883 },884 {885 "path": "workflow/tools/bedtools2/src/sampleFile/sampleFile.h",886 "sha256": "9000721834e6a9a85419bb63d5e990c2c649bf5f4d13f3c1b8bed022256c0038",887 "language": "C/C++",888 "lines": 47,889 "truncated": false,890 "block": 14,891 "row": 3953892 },893 {894 "path": "workflow/tools/bedtools2/src/sampleFile/sampleHelp.cpp",895 "sha256": "296882b0a69a81505be1147915c31fb995dde9c704634f994c74611d41087bf4",896 "language": "C++",897 "lines": 45,898 "truncated": false,899 "block": 14,900 "row": 1511901 },902 {903 "path": "workflow/tools/bedtools2/src/shiftBed/shiftBed.cpp",904 "sha256": "e1edc976f9ed62f58510d2aa21ae98d412ab5dcb3aa111db864290bf93375755",905 "language": "C++",906 "lines": 77,907 "truncated": false,908 "block": 19,909 "row": 635910 },911 {912 "path": "workflow/tools/bedtools2/src/shiftBed/shiftBed.h",913 "sha256": "72c2278588b03bd9dda45ef80b584f414096b87af1b75be2f0310b435953647c",914 "language": "C/C++",915 "lines": 57,916 "truncated": false,917 "block": 14,918 "row": 3989919 },920 {921 "path": "workflow/tools/bedtools2/src/shiftBed/shiftBedMain.cpp",922 "sha256": "b2d012a8bbf2d60e8781d261e45d46928ffdfb8aa7abc862ef4c0e295efa2136",923 "language": "C++",924 "lines": 179,925 "truncated": false,926 "block": 14,927 "row": 2451928 },929 {930 "path": "workflow/tools/bedtools2/src/shuffleBed/shuffleBed.cpp",931 "sha256": "97b1469a482da9305fc04791c3d0b070e10744aa777dbdcdfd052a015b4da720",932 "language": "C++",933 "lines": 509,934 "truncated": false,935 "block": 19,936 "row": 985937 },938 {939 "path": "workflow/tools/bedtools2/src/shuffleBed/shuffleBed.h",940 "sha256": "c5599db477c79b3e6e381e9f14cfab2c1a2417e67da236d1925278bf512cbd09",941 "language": "C/C++",942 "lines": 101,943 "truncated": false,944 "block": 14,945 "row": 4591946 },947 {948 "path": "workflow/tools/bedtools2/src/shuffleBed/shuffleBedMain.cpp",949 "sha256": "c7a19ea0c73501ae011137e2cbbb8a18a0b0e793df5d98781afce864eecb07f1",950 "language": "C++",951 "lines": 234,952 "truncated": false,953 "block": 14,954 "row": 2748955 },956 {957 "path": "workflow/tools/bedtools2/src/slopBed/slopBed.cpp",958 "sha256": "a25423c4695e666f1cf81dab18dc3a21d1cf20e4895831f929e27d11f8ddc061",959 "language": "C++",960 "lines": 109,961 "truncated": false,962 "block": 19,963 "row": 693964 },965 {966 "path": "workflow/tools/bedtools2/src/slopBed/slopBed.h",967 "sha256": "7bbe50d8d31e2e955c8012d3dd1cbbd869179c4afa8946f57c1a532599a581a0",968 "language": "C/C++",969 "lines": 61,970 "truncated": false,971 "block": 14,972 "row": 4026973 },974 {975 "path": "workflow/tools/bedtools2/src/slopBed/slopBedMain.cpp",976 "sha256": "336b183c399ccd3e73bde40e4c536fc6fa57c4c1434c58a28e83670a7c384545",977 "language": "C++",978 "lines": 198,979 "truncated": false,980 "block": 19,981 "row": 850982 },983 {984 "path": "workflow/tools/bedtools2/src/sortBed/sortBed.cpp",985 "sha256": "c72bb170d3397693c2ceae5d7556c451f32c9edb427e5db586a7da0af32ba7ef",986 "language": "C++",987 "lines": 246,988 "truncated": false,989 "block": 14,990 "row": 2533991 },992 {993 "path": "workflow/tools/bedtools2/src/sortBed/sortBed.h",994 "sha256": "eefe18bddbc864939de219c52af528d8635f176afd66bf815217a06e74b077dd",995 "language": "C/C++",996 "lines": 51,997 "truncated": false,998 "block": 14,999 "row": 41041000 },1001 {1002 "path": "workflow/tools/bedtools2/src/sortBed/sortMain.cpp",1003 "sha256": "8046cf76496171231ba343f8b5451fd9e945910226a1a79bc2a7b2f2a9e5467d",1004 "language": "C++",1005 "lines": 193,1006 "truncated": false,1007 "block": 14,1008 "row": 24051009 },1010 {1011 "path": "workflow/tools/bedtools2/src/spacingFile/spacingFile.cpp",1012 "sha256": "88373e277322fcda3c281986878f53f7b88747262633311fe6770b2aa2bf19b7",1013 "language": "C++",1014 "lines": 84,1015 "truncated": false,1016 "block": 19,1017 "row": 6261018 },1019 {1020 "path": "workflow/tools/bedtools2/src/spacingFile/spacingFile.h",1021 "sha256": "43e62f547ca6593d9bd3f04cc707487991bed1b8e997215a9fde691ec2035cbe",1022 "language": "C/C++",1023 "lines": 43,1024 "truncated": false,1025 "block": 14,1026 "row": 38271027 },1028 {1029 "path": "workflow/tools/bedtools2/src/spacingFile/spacingHelp.cpp",1030 "sha256": "77fce1d52c95cd80103a19fe2f09a54e7c57e3136df5209b83783ecdb18aa1a0",1031 "language": "C++",1032 "lines": 39,1033 "truncated": false,1034 "block": 14,1035 "row": 13381036 },1037 {1038 "path": "workflow/tools/bedtools2/src/split/splitBed.cpp",1039 "sha256": "45ef644ab0a00d2a0fca77033bc92f4e44be4f1635a3e3e5e8ef126678bf5b95",1040 "language": "C++",1041 "lines": 359,1042 "truncated": false,1043 "block": 19,1044 "row": 9191045 },1046 {1047 "path": "workflow/tools/bedtools2/src/split/splitBed.h",1048 "sha256": "be341488f0a77c2f51c28540780b5660fc6c5f11fdbbbe4c75c12b9056aa72bb",1049 "language": "C/C++",1050 "lines": 50,1051 "truncated": false,1052 "block": 14,1053 "row": 40191054 },1055 {1056 "path": "workflow/tools/bedtools2/src/split/splitBedMain.cpp",1057 "sha256": "34b18ba4d722cb6c8fc2d92e01fd324e28312ec3064953f39930da9fccd22146",1058 "language": "C++",1059 "lines": 20,1060 "truncated": false,1061 "block": 14,1062 "row": 10701063 },1064 {1065 "path": "workflow/tools/bedtools2/src/subtractFile/subtractFile.cpp",1066 "sha256": "7f516a0a442d8e1b6a45b53232fa715a7504c6e62a17481fa55c77b3ce0fbb15",1067 "language": "C++",1068 "lines": 142,1069 "truncated": false,1070 "block": 14,1071 "row": 21281072 },1073 {1074 "path": "workflow/tools/bedtools2/src/subtractFile/subtractFile.h",1075 "sha256": "360b1981772bba68facb572e4cc83a9180cc0535b3b28468cf33664c4d95b45a",1076 "language": "C/C++",1077 "lines": 36,1078 "truncated": false,1079 "block": 14,1080 "row": 37721081 },1082 {1083 "path": "workflow/tools/bedtools2/src/subtractFile/subtractHelp.cpp",1084 "sha256": "d060e3a6b866c8404416cdfa2f56c873d157c56ad57059b3acbb6cea22f77a42",1085 "language": "C++",1086 "lines": 39,1087 "truncated": false,1088 "block": 14,1089 "row": 14511090 },1091 {1092 "path": "workflow/tools/bedtools2/src/summaryFile/summaryFile.cpp",1093 "sha256": "02cb7880f05e4f4ecd9fcc8674108ceb00b8dec25377d1542cfa27279f5db46a",1094 "language": "C++",1095 "lines": 144,1096 "truncated": false,1097 "block": 19,1098 "row": 7431099 },1100 {1101 "path": "workflow/tools/bedtools2/src/summaryFile/summaryFile.h",1102 "sha256": "a01b8ddc72e3e1cdcbbdd7f50cf60caa61b6161cb5526bb59a82a04c6e418999",1103 "language": "C/C++",1104 "lines": 49,1105 "truncated": false,1106 "block": 19,1107 "row": 12771108 },1109 {1110 "path": "workflow/tools/bedtools2/src/summaryFile/summaryHelp.cpp",1111 "sha256": "a4b7d770e19e18dcc33343ef10a8705c5b86e1a2f00b5c56852bd03ad3807587",1112 "language": "C++",1113 "lines": 26,1114 "truncated": false,1115 "block": 19,1116 "row": 5841117 },1118 {1119 "path": "workflow/tools/bedtools2/src/tagBam/tagBam.cpp",1120 "sha256": "b5f924e8a6bbbbfcabd53a3b29ead87211428276afa1e20d676501b7f710de9a",1121 "language": "C++",1122 "lines": 161,1123 "truncated": false,1124 "block": 14,1125 "row": 23831126 },1127 {1128 "path": "workflow/tools/bedtools2/src/tagBam/tagBam.h",1129 "sha256": "e3f9335490d9bbd303949ed090e6f69427037bff523259090c6e6ca7b1d2a883",1130 "language": "C/C++",1131 "lines": 82,1132 "truncated": false,1133 "block": 14,1134 "row": 43431135 },1136 {1137 "path": "workflow/tools/bedtools2/src/tagBam/tagBamMain.cpp",1138 "sha256": "583399969624a62163f41b505b8994649b1991c65f371874b7fd0f0f862230f4",1139 "language": "C++",1140 "lines": 234,1141 "truncated": false,1142 "block": 14,1143 "row": 26461144 },1145 {1146 "path": "workflow/tools/bedtools2/src/unionBedGraphs/unionBedGraphs.cpp",1147 "sha256": "47546a0b30c41e8ec25ed43f22bbcf6501300aef1b1e0ad1109f19489f8eb380",1148 "language": "C++",1149 "lines": 254,1150 "truncated": false,1151 "block": 14,1152 "row": 25051153 },1154 {1155 "path": "workflow/tools/bedtools2/src/unionBedGraphs/unionBedGraphs.h",1156 "sha256": "271cc0205fe3b356faf8d99a7794899aa0e3b4a8cae9e66a45d25e503cf075b7",1157 "language": "C/C++",1158 "lines": 123,1159 "truncated": false,1160 "block": 14,1161 "row": 49411162 },1163 {1164 "path": "workflow/tools/bedtools2/src/unionBedGraphs/unionBedGraphsMain.cpp",1165 "sha256": "c2bb02b136d33083e792a8fbb2a9e0c8bf5eb92e549029abb36b3435bb5535b7",1166 "language": "C++",1167 "lines": 293,1168 "truncated": false,1169 "block": 14,1170 "row": 27261171 },1172 {1173 "path": "workflow/tools/bedtools2/src/utils/BamTools-Ancillary/BamAncillary.cpp",1174 "sha256": "b6ae8ba2d9c8ceaad6c2e4112dc4aefd749e0f6b83c4ebfd80e5ea232b76d1a6",1175 "language": "C++",1176 "lines": 115,1177 "truncated": false,1178 "block": 19,1179 "row": 7611180 },1181 {1182 "path": "workflow/tools/bedtools2/src/utils/BamTools-Ancillary/BamAncillary.h",1183 "sha256": "c5aa2e4091c2d0a13cc5f70441bc8b1cfd48cb5e47beafa94c98d59bf5ef5098",1184 "language": "C/C++",1185 "lines": 22,1186 "truncated": false,1187 "block": 14,1188 "row": 37711189 },1190 {1191 "path": "workflow/tools/bedtools2/src/utils/BamTools/include/BamAncillary.h",1192 "sha256": "5b52e0d649899a2e2d95a6ce338530993b059ae6d224cf33a2d2fbe479208fd8",1193 "language": "C/C++",1194 "lines": 2,1195 "truncated": false,1196 "block": 19,1197 "row": 11521198 },1199 {1200 "path": "workflow/tools/bedtools2/src/utils/BamTools/include/api/BamAlignment.h",