OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/konopkalab/comparative_striatum",4 "url": "https://github.com/konopkalab/Comparative_striatum",5 "host": "github.com",6 "commit": "b8e37042199a12756ee1ae145790fc9862f6cfc6",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "01_Generate_NHP_gtfs/LIFTOFF_HUMAN_TO_CHIMP.sh",13   "sha256": "31425f455ca1a24b9ae23db91b38a922f00dccf185e9abd1d2d97c50a647051b",14   "language": "Shell",15   "lines": 22,16   "truncated": false,17   "block": 8,18   "row": 813619  },20  {21   "path": "01_Generate_NHP_gtfs/LIFTOFF_HUMAN_TO_MACAQUE.sh",22   "sha256": "11dc69e1ed2a5d2b8c31dcd40b0b521e9586afa6dd6fce678b28f3e0170694a9",23   "language": "Shell",24   "lines": 30,25   "truncated": false,26   "block": 8,27   "row": 815128  },29  {30   "path": "01_Generate_NHP_gtfs/LIFTOFF_HUMAN_TO_MARMOSET.sh",31   "sha256": "0c94d969fa579eed7f9ca441d95404734c80dea44747b5dbd0fdbfa8185d8e7b",32   "language": "Shell",33   "lines": 22,34   "truncated": false,35   "block": 8,36   "row": 776337  },38  {39   "path": "01_Generate_NHP_gtfs/MKREF_LIFTOFF_CHIMP.sh",40   "sha256": "aa29e2fc864ca0c61aefcbd9a96b243cadc1681b19c41fd0dbd8b697f393600b",41   "language": "Shell",42   "lines": 48,43   "truncated": false,44   "block": 8,45   "row": 817946  },47  {48   "path": "01_Generate_NHP_gtfs/MKREF_LIFTOFF_MACAQUE.sh",49   "sha256": "e3701963f09054c86c06032bfca97715e22f1da184531c3b5a4d219d06c0ecca",50   "language": "Shell",51   "lines": 48,52   "truncated": false,53   "block": 8,54   "row": 818055  },56  {57   "path": "01_Generate_NHP_gtfs/MKREF_LIFTOFF_MARMOSET.sh",58   "sha256": "2433a3890e684a74a905f8914c81d8cd56578b0c3fcdc187e2dfebcfb888a77e",59   "language": "Shell",60   "lines": 48,61   "truncated": false,62   "block": 8,63   "row": 817864  },65  {66   "path": "02_Bat/00_DEMULTIPLEX.sh",67   "sha256": "9fa7f0a9de3ae4e1caaa317da88f7b42b36e422a4262d1ca2a7cb49fdd0863e9",68   "language": "Shell",69   "lines": 145,70   "truncated": false,71   "block": 8,72   "row": 908173  },74  {75   "path": "02_Bat/01_GENERATE_COUNT_MATRIX.sh",76   "sha256": "1974c1438f6d78e981cd9512cd51f6edce436f8d0b9fab06be01d079fbe965a7",77   "language": "Shell",78   "lines": 49,79   "truncated": false,80   "block": 8,81   "row": 848482  },83  {84   "path": "02_Bat/02_CELLBENDER.sh",85   "sha256": "370453ceb4befdcf09695f93590df9847bf726835aeb7c68bbc949cb988a0a25",86   "language": "Shell",87   "lines": 13,88   "truncated": false,89   "block": 8,90   "row": 664891  },92  {93   "path": "02_Bat/03_ANNOTATION.R",94   "sha256": "142f90749e492db1e5e1d5ae510041bae61d42803193a9053e51ed77f48fe54b",95   "language": "R",96   "lines": 950,97   "truncated": false,98   "block": 8,99   "row": 4968100  },101  {102   "path": "02_Bat/04_WGCNA.R",103   "sha256": "e5f011824b37bdfcc53b810015af9168c26dad6f95963e00f64ebf03fd3b3f75",104   "language": "R",105   "lines": 547,106   "truncated": false,107   "block": 8,108   "row": 4865109  },110  {111   "path": "02_Chimp/00_mkfastq_1.sh",112   "sha256": "dbfe59e7af5a6298fbd8e00a126cc769b6961ad3990a73fae0283b1574df6c85",113   "language": "Shell",114   "lines": 54,115   "truncated": false,116   "block": 8,117   "row": 8169118  },119  {120   "path": "02_Chimp/00_mkfastq_2.sh",121   "sha256": "86233fd7886504e8334db6019e269a40fd0be438681a274498e79704f47e50f1",122   "language": "Shell",123   "lines": 54,124   "truncated": false,125   "block": 8,126   "row": 8202127  },128  {129   "path": "02_Chimp/01_CELLRANGER_COUNT_CHIMP.sh",130   "sha256": "19048cb680367e0aef6eef56e1509402a29516fb8b504d3bd5934d61bf342915",131   "language": "Shell",132   "lines": 51,133   "truncated": false,134   "block": 8,135   "row": 8296136  },137  {138   "path": "02_Chimp/01_CELLRANGER_COUNT_CHIMP_2.sh",139   "sha256": "5adaf5a47a38345a2a82603f532287aa336c7cc799e4c17b5173d04a463365da",140   "language": "Shell",141   "lines": 54,142   "truncated": false,143   "block": 8,144   "row": 8446145  },146  {147   "path": "02_Chimp/01_CELLRANGER_COUNT_CHIMP_3.sh",148   "sha256": "fa20913bffbd1a2934aa2cacd9a8058e5d20ddea4ae712445cf3834400550a7d",149   "language": "Shell",150   "lines": 53,151   "truncated": false,152   "block": 8,153   "row": 8367154  },155  {156   "path": "02_Chimp/01_CELLRANGER_COUNT_CHIMP_4.sh",157   "sha256": "80b1a6e88878a3b9b90f889341d80ea758c0a27d320d2ae7b688835844e58ba7",158   "language": "Shell",159   "lines": 44,160   "truncated": false,161   "block": 8,162   "row": 8302163  },164  {165   "path": "02_Chimp/02_CELLBENDER.sh",166   "sha256": "370453ceb4befdcf09695f93590df9847bf726835aeb7c68bbc949cb988a0a25",167   "language": "Shell",168   "lines": 13,169   "truncated": false,170   "block": 8,171   "row": 6648172  },173  {174   "path": "02_Chimp/03_ANNOTATE_CHIMP_CAUDATE.R",175   "sha256": "675b8790094c5961bdd5c9c6a1bb5b58bb9f53bea0c783eaef017189587f68b3",176   "language": "R",177   "lines": 396,178   "truncated": false,179   "block": 8,180   "row": 4406181  },182  {183   "path": "02_Chimp/03_ANNOTATE_CHIMP_PUTAMEN.R",184   "sha256": "5e5da2067e2f9035b2ea1dc42e8989939028c2bc0b7dbc88d610c73b37e9bfa2",185   "language": "R",186   "lines": 391,187   "truncated": false,188   "block": 8,189   "row": 4382190  },191  {192   "path": "02_Chimp/04_INTERNEURON_CLUSTER.R",193   "sha256": "9be67bc52aae5225a9213abb6c735378af18d8098044f81f81a92230d11f9bcb",194   "language": "R",195   "lines": 292,196   "truncated": false,197   "block": 8,198   "row": 4149199  },200  {201   "path": "02_Chimp/05_NEURON_CLUSTER.R",202   "sha256": "55685d9ef09e3960b63683033811655c799070a191c47ff06fef0c1f01d582ea",203   "language": "R",204   "lines": 636,205   "truncated": false,206   "block": 8,207   "row": 4859208  },209  {210   "path": "02_Ferret/00_CONVERT_BAM_TO_10X_FASTQ.sh",211   "sha256": "51ae8a0eed1545ac4fe552d2b76701e57c95436dbb9054026b996e99bd93e615",212   "language": "Shell",213   "lines": 72,214   "truncated": false,215   "block": 8,216   "row": 8679217  },218  {219   "path": "02_Ferret/01_GENERATE_COUNT_MATRIX.sh",220   "sha256": "bf73af7edac4ab8f29c5bb185289f420bedf521003f4e587ff70f445294b491f",221   "language": "Shell",222   "lines": 48,223   "truncated": false,224   "block": 8,225   "row": 8350226  },227  {228   "path": "02_Ferret/02_PREP_FOR_CELLBENDER.R",229   "sha256": "bfcdaff74fbdf7e0660c225d31c1aeb494145b699638449aba782e29248aee57",230   "language": "R",231   "lines": 118,232   "truncated": false,233   "block": 8,234   "row": 3345235  },236  {237   "path": "02_Ferret/03_CELLBENDER.sh",238   "sha256": "84010f66ec6ae7a9e396c6ee77ab1c715c192714b7eb06c604a7347414bef0db",239   "language": "Shell",240   "lines": 43,241   "truncated": false,242   "block": 8,243   "row": 7838244  },245  {246   "path": "02_Ferret/04_ANNOTATION.R",247   "sha256": "52169462c88f65b52e048c0002a909ff3e11e132cad526f7205d5c3bafd29279",248   "language": "R",249   "lines": 325,250   "truncated": false,251   "block": 8,252   "row": 4168253  },254  {255   "path": "02_Human/00_mkfastq.sh",256   "sha256": "0ad8660d2aa183405642aff8242276355e74b8bfcd18b9fe61891aed003f257f",257   "language": "Shell",258   "lines": 40,259   "truncated": false,260   "block": 8,261   "row": 8168262  },263  {264   "path": "02_Human/01_COUNT_CELLRANGER_1.sh",265   "sha256": "a46fcab672dc83ae73265042c217d0312a065d47560710026fd1a4197340078f",266   "language": "Shell",267   "lines": 58,268   "truncated": false,269   "block": 8,270   "row": 8188271  },272  {273   "path": "02_Human/01_COUNT_CELLRANGER_2.sh",274   "sha256": "a1a6727f0a5990ea4efde5945a58a28013298c6123f83118d5689811c0e5e109",275   "language": "Shell",276   "lines": 61,277   "truncated": false,278   "block": 8,279   "row": 8545280  },281  {282   "path": "02_Human/01_COUNT_CELLRANGER_3.sh",283   "sha256": "2e44f320e57a8e835949415cff5aac89c6b132c64e23051386fd90244dcc26a1",284   "language": "Shell",285   "lines": 59,286   "truncated": false,287   "block": 8,288   "row": 8394289  },290  {291   "path": "02_Human/01_COUNT_CELLRANGER_4.sh",292   "sha256": "26990b277b98c0433b571bc3ed160fa62fda6abf8300cd4ebb6cbf5b231b0e2c",293   "language": "Shell",294   "lines": 54,295   "truncated": false,296   "block": 8,297   "row": 8376298  },299  {300   "path": "02_Human/01_COUNT_CELLRANGER_5.sh",301   "sha256": "26990b277b98c0433b571bc3ed160fa62fda6abf8300cd4ebb6cbf5b231b0e2c",302   "language": "Shell",303   "lines": 54,304   "truncated": false,305   "block": 8,306   "row": 8376307  },308  {309   "path": "02_Human/02_CELLBENDER.sh",310   "sha256": "3b7ad86bdc6fdec9c9ec1fca0b7df575029debc9bd2aba35eb1803bb466e9e5c",311   "language": "Shell",312   "lines": 19,313   "truncated": false,314   "block": 8,315   "row": 6763316  },317  {318   "path": "02_Human/03_CAUDATEPUTAMEN_CLUSTER.R",319   "sha256": "a2a4884af4eb7a9979b99d87f898788f2b98cbd1b053b5a7c453f3b582cbafc9",320   "language": "R",321   "lines": 356,322   "truncated": false,323   "block": 8,324   "row": 4286325  },326  {327   "path": "02_Human/04_NEURON_CLUSTER.R",328   "sha256": "38f58bbf510d3feb9b7e3ea194962a707d354c7f715a7275a3d8a8a131442c73",329   "language": "R",330   "lines": 481,331   "truncated": false,332   "block": 8,333   "row": 4624334  },335  {336   "path": "02_Human/05_INTERNEURON_CLUSTER.R",337   "sha256": "404638851bd15a98c5cb84641b84643f8f95cb9e1dede92673281bcf2fafb278",338   "language": "R",339   "lines": 226,340   "truncated": false,341   "block": 8,342   "row": 3838343  },344  {345   "path": "02_Human/06_WGCNA.R",346   "sha256": "c5f860356a6456ab96bd2a939baae8da7799fe1239a77f967312b1a219b6aecb",347   "language": "R",348   "lines": 510,349   "truncated": false,350   "block": 8,351   "row": 4732352  },353  {354   "path": "02_Macaque/01_CELLRANGER_COUNT_1.sh",355   "sha256": "5928b1768cf4f4f85d188617bb307589696c70ab0c2766a49dab569c27ed09fe",356   "language": "Shell",357   "lines": 66,358   "truncated": false,359   "block": 8,360   "row": 8873361  },362  {363   "path": "02_Macaque/02_CELLBENDER.sh",364   "sha256": "370453ceb4befdcf09695f93590df9847bf726835aeb7c68bbc949cb988a0a25",365   "language": "Shell",366   "lines": 13,367   "truncated": false,368   "block": 8,369   "row": 6648370  },371  {372   "path": "02_Macaque/03_ANNOTATION_MACAQUE_CAUDATE.R",373   "sha256": "40dafcd28a80bdfb98738088270b7b0edd22531d77fa784e9990518b8764fa70",374   "language": "R",375   "lines": 525,376   "truncated": false,377   "block": 8,378   "row": 4561379  },380  {381   "path": "02_Macaque/03_ANNOTATION_MACAQUE_PUTAMEN.R",382   "sha256": "c1ebb0530fc07cdeb28d51ab3fdb8ead45561ee16bb897f42cbe112e6b743819",383   "language": "R",384   "lines": 306,385   "truncated": false,386   "block": 8,387   "row": 4132388  },389  {390   "path": "02_Macaque/04_INTEGRATION_CAUDATE.R",391   "sha256": "52c20b96d26c0c6fb63dfc780d254d677565a9dce6c5c570f13d92cdba70938d",392   "language": "R",393   "lines": 212,394   "truncated": false,395   "block": 8,396   "row": 3831397  },398  {399   "path": "02_Macaque/04_INTEGRATION_PUTAMEN.R",400   "sha256": "535b40735314d864301c20b9252d2d6b1cf52a69af709497186501e8e0bcd584",401   "language": "R",402   "lines": 219,403   "truncated": false,404   "block": 8,405   "row": 3823406  },407  {408   "path": "02_Macaque/05_CAUDATE_PUTAMEN_INTEGRATE_ANNOTATE.R",409   "sha256": "bfc5245912b6b9272f5dc1e6c4ceb048846a2eca1e8941ef59d31725e2ceaa97",410   "language": "R",411   "lines": 408,412   "truncated": false,413   "block": 8,414   "row": 4390415  },416  {417   "path": "02_Macaque/He_et_al_Macaque/00_fasterq_dump.sh",418   "sha256": "6b83c2a04e8a84b541cd66675cad7fe38a3bca9d33de6c0ef4547983dce1715c",419   "language": "Shell",420   "lines": 74,421   "truncated": false,422   "block": 8,423   "row": 8714424  },425  {426   "path": "02_Macaque/He_et_al_Macaque/01_CELLRANGER_COUNT_1.sh",427   "sha256": "41603da9e20b109d2e6f6a4c4e95a2d00c1e273f3531319b8cd9a2734d9f6f5d",428   "language": "Shell",429   "lines": 51,430   "truncated": false,431   "block": 8,432   "row": 8229433  },434  {435   "path": "02_Macaque/He_et_al_Macaque/01_CELLRANGER_COUNT_2.sh",436   "sha256": "ca6eb34ec19b53b51f347533dadf464fe9c857c90e15f058abf3204ba68a7582",437   "language": "Shell",438   "lines": 51,439   "truncated": false,440   "block": 8,441   "row": 8231442  },443  {444   "path": "02_Macaque/He_et_al_Macaque/01_CELLRANGER_COUNT_3.sh",445   "sha256": "9f75e70efac46d08ce7c45f1e26aa56ca1e5eb7114c631c8411e6411b92c20c7",446   "language": "Shell",447   "lines": 51,448   "truncated": false,449   "block": 8,450   "row": 8230451  },452  {453   "path": "02_Macaque/He_et_al_Macaque/02_CELLBENDER.sh",454   "sha256": "370453ceb4befdcf09695f93590df9847bf726835aeb7c68bbc949cb988a0a25",455   "language": "Shell",456   "lines": 13,457   "truncated": false,458   "block": 8,459   "row": 6648460  },461  {462   "path": "02_Macaque/He_et_al_Macaque/03_ANNOTATION_CAUDATE.R",463   "sha256": "73942bdc10913022188085fdd743571f17f0f37ff66c4229804e2ab600c15e41",464   "language": "R",465   "lines": 361,466   "truncated": false,467   "block": 8,468   "row": 4321469  },470  {471   "path": "02_Macaque/He_et_al_Macaque/03_ANNOTATION_PUTAMEN.R",472   "sha256": "f799e2bf1df7fec7e7bb0a27b535626f90e5d5b7c494177a72dfa7f722f55b84",473   "language": "R",474   "lines": 445,475   "truncated": false,476   "block": 8,477   "row": 4558478  },479  {480   "path": "02_Marmoset/03_INTEGRATE_ANNOTATE_DATASETS.R",481   "sha256": "9f43130f213701cddd6cda477900e684fce9024992844923f23fceefb52ccf46",482   "language": "R",483   "lines": 538,484   "truncated": false,485   "block": 8,486   "row": 4706487  },488  {489   "path": "02_Marmoset/Krienen_et_al/00_DOWNLOAD_FASTQ_FROM_URL.sh",490   "sha256": "9bc0261431bb9f8e626ffb2039fe6f5372aeb8b5b87b7306c11edfb57b0aa1e5",491   "language": "Shell",492   "lines": 34,493   "truncated": false,494   "block": 8,495   "row": 7516496  },497  {498   "path": "02_Marmoset/Krienen_et_al/01_ARRANGE_FASTQs.sh",499   "sha256": "cdef3d0d3bb4d18de2f87b54e24fb10c954ed268fe93b3ba1cf2dbee75aafbc1",500   "language": "Shell",501   "lines": 81,502   "truncated": false,503   "block": 8,504   "row": 8647505  },506  {507   "path": "02_Marmoset/Krienen_et_al/02_GENERATE_COUNT_MATRICES.sh",508   "sha256": "39d012a06598b0a54eb0adf53988e5e0f24bf727c9f190ee7c95aa7c58b82c5f",509   "language": "Shell",510   "lines": 69,511   "truncated": false,512   "block": 8,513   "row": 8723514  },515  {516   "path": "02_Marmoset/Krienen_et_al/03_CELLBENDER.sh",517   "sha256": "c103d886450d8b2e914e4920b5aa662fad703822b8e1cc95f0f914a968aa3ebf",518   "language": "Shell",519   "lines": 11,520   "truncated": false,521   "block": 8,522   "row": 6630523  },524  {525   "path": "02_Marmoset/Krienen_et_al/04_ANNOTATION.R",526   "sha256": "839fd585a93fdecf7ee0eb72ce9a046360198c02a3e970a92097806e45976e75",527   "language": "R",528   "lines": 793,529   "truncated": false,530   "block": 8,531   "row": 4906532  },533  {534   "path": "02_Marmoset/Lin_et_al/00_DOWNLOAD_FASTQs.sh",535   "sha256": "64c238b25030c422b47e79b65d077b1cf0df0922c28fffd9c12e421477f7e139",536   "language": "Shell",537   "lines": 77,538   "truncated": false,539   "block": 8,540   "row": 8724541  },542  {543   "path": "02_Marmoset/Lin_et_al/01_GENERATE_COUNT_MATRIX.sh",544   "sha256": "763697df55591e57151c4210367fce38128b80fce884dff0313afe7f82805946",545   "language": "Shell",546   "lines": 45,547   "truncated": false,548   "block": 8,549   "row": 8287550  },551  {552   "path": "02_Marmoset/Lin_et_al/02_CELLBENDER.sh",553   "sha256": "c103d886450d8b2e914e4920b5aa662fad703822b8e1cc95f0f914a968aa3ebf",554   "language": "Shell",555   "lines": 11,556   "truncated": false,557   "block": 8,558   "row": 6630559  },560  {561   "path": "02_Marmoset/Lin_et_al/03_ANNOTATE.R",562   "sha256": "dcef493f0f8755908a236eb68ec981e4d89ee5b7d841fe88ed47006555daca47",563   "language": "R",564   "lines": 538,565   "truncated": false,566   "block": 8,567   "row": 4665568  },569  {570   "path": "02_Mouse/01_GENERATE_COUNT_MATRIX_NEXTFLOW.sh",571   "sha256": "5c10fdc158dcb5c139e2281cd461c9031d0464c997981f43d24609f258761cb6",572   "language": "Shell",573   "lines": 51,574   "truncated": false,575   "block": 8,576   "row": 8318577  },578  {579   "path": "02_Mouse/02_PREPARE_FOR_CELLBENDER.R",580   "sha256": "a23e0d289ccee756ac6c5ad0083cdf314e6f9c023e4460bf5a4a42117bbd06e8",581   "language": "R",582   "lines": 49,583   "truncated": false,584   "block": 8,585   "row": 1799586  },587  {588   "path": "02_Mouse/03_CELLBENDER.sh",589   "sha256": "00b9448c9fdcaf42452a79cfdbd85d14626623ae1f6be594e267792cad16c3ea",590   "language": "Shell",591   "lines": 15,592   "truncated": false,593   "block": 8,594   "row": 6772595  },596  {597   "path": "02_Mouse/04_CAUDOPUTAMEN_ANNOTATE.R",598   "sha256": "0af7b232804217904a2cd20276e7c90e01ccf1212f308d964df681037fc4e6af",599   "language": "R",600   "lines": 279,601   "truncated": false,602   "block": 8,603   "row": 3968604  },605  {606   "path": "03_SPNs/00_get_orthologs.sh",607   "sha256": "fa8527f434ddd2c643e5b3491c4728b1a7755a8f151e96cc74ba406308a279d0",608   "language": "Shell",609   "lines": 90,610   "truncated": false,611   "block": 8,612   "row": 8925613  },614  {615   "path": "03_SPNs/01_INTEGRATION_AND_CLUSTERING.R",616   "sha256": "c7a6e6fccc3d2250c6cfda7c5af9343cf25a3d4aa1f71318fde301e17b13aa36",617   "language": "R",618   "lines": 2281,619   "truncated": false,620   "block": 8,621   "row": 5214622  },623  {624   "path": "03_SPNs/02_eSPN_markers.R",625   "sha256": "d8a6cec827aa24b14ef00785a180f900a4adf52d2b0ab1b22d53d5ed35b64ea3",626   "language": "R",627   "lines": 444,628   "truncated": false,629   "block": 8,630   "row": 4716631  },632  {633   "path": "03_SPNs/03_eSPN_D1D2_hybrid_correlation.R",634   "sha256": "d768ac5ff8e090203109cb8503274f5e9a7b03767fe97dc58e7bb0ea026314e5",635   "language": "R",636   "lines": 186,637   "truncated": false,638   "block": 8,639   "row": 3834640  },641  {642   "path": "03_SPNs/04_SPN_seurat_obj_convert_seurat_obj_to_AnnData.R",643   "sha256": "a764bf27381d26af6b1268a9912e65c0ef610beb4e89853710793e7cb7d69ebd",644   "language": "R",645   "lines": 32,646   "truncated": false,647   "block": 8,648   "row": 2004649  },650  {651   "path": "03_SPNs/05_Cell_type_proportion_analysis_scCODA.ipynb",652   "sha256": "a19757fbfb1617391b0792cf59005204f37a4fd69be5a013d3f95f1e8264d0fd",653   "language": "Jupyter",654   "lines": 460,655   "truncated": false,656   "block": 6,657   "row": 618658  },659  {660   "path": "04_Interneurons/01_Integration&Clustering.R",661   "sha256": "8d363a3b0cdb85e4b8d5c76a65ab260e6d7d74824307151cb57142de0fe4f291",662   "language": "R",663   "lines": 3782,664   "truncated": false,665   "block": 8,666   "row": 5232667  },668  {669   "path": "04_Interneurons/02_Interneurons_scCODA.ipynb",670   "sha256": "3a027cbd56b26c4117a81eaa9d9b28ac5ad5ace21f1d71b98e63f7d9723ec7c4",671   "language": "Jupyter",672   "lines": 586,673   "truncated": false,674   "block": 6,675   "row": 836676  },677  {678   "path": "04_Interneurons/03_DEG_Analysis.R",679   "sha256": "753d907f6d1e17c40fc420baa85322e5047fce0db4071dcee05687a8e7991e03",680   "language": "R",681   "lines": 467,682   "truncated": false,683   "block": 8,684   "row": 4745685  },686  {687   "path": "04_Interneurons/04_Correlation_withinBatPutamen.R",688   "sha256": "dcc5cf0748cd9eefe73ae9d17ac12d913dff129bebe25b727ce28d00743bc97d",689   "language": "R",690   "lines": 104,691   "truncated": false,692   "block": 8,693   "row": 2611694  },695  {696   "path": "04_Interneurons/05_Fig5A_scCODA.py",697   "sha256": "64824c2a97c54159581957777f0f3d6c588e35ae0ed94b8ffe4f100120fc42e9",698   "language": "Python",699   "lines": 77,700   "truncated": false,701   "block": 6,702   "row": 33689703  },704  {705   "path": "05_DGE_analysis/00_prep_pseudobulk_counts.R",706   "sha256": "06a0405190a6c6cd86e26c8f394172f5181b652b0f9d0c933eeb552045883354",707   "language": "R",708   "lines": 1667,709   "truncated": false,710   "block": 8,711   "row": 5184712  },713  {714   "path": "05_DGE_analysis/01_primates_pseudobulk_DESeq2.R",715   "sha256": "b51b511736c007b392f9f2e6a9db374eb060585ec0163649af28c1ae51a86e27",716   "language": "R",717   "lines": 353,718   "truncated": false,719   "block": 8,720   "row": 4592721  },722  {723   "path": "05_DGE_analysis/02_DEG_figures.R",724   "sha256": "37c1c00e0b794b024c0a59e1115496c3367565459e4bcf390b2af58b055435a2",725   "language": "R",726   "lines": 827,727   "truncated": false,728   "block": 8,729   "row": 4994730  },731  {732   "path": "GLIA_TO_NEURON.R",733   "sha256": "bef1b3ae823b10db777c409832fe22c9c1fd39d25143781a64ca81c2eb442168",734   "language": "R",735   "lines": 517,736   "truncated": false,737   "block": 8,738   "row": 4776739  },740  {741   "path": "LICENSE",742   "sha256": "7ea56792f124d334498069db4a63ce01c97ec005d65558d727429bed0fc02f6b",743   "language": "License",744   "lines": 21,745   "truncated": false,746   "block": 6,747   "row": 1508748  },749  {750   "path": "QC_plots.R",751   "sha256": "5ad68b4c17d2a13002699d7b59d53532f9f3f1aa1663f04e1f1ae56a7d9d7f4f",752   "language": "R",753   "lines": 1047,754   "truncated": false,755   "block": 8,756   "row": 5112757  },758  {759   "path": "README.md",760   "sha256": "87c1713319813e45ee352cd38b9f324c2e3f7e4488cd304526c4dc21f9b67783",761   "language": "Text",762   "lines": 15,763   "truncated": false,764   "block": 8,765   "row": 9628766  },767  {768   "path": "python_functions.py",769   "sha256": "a38adc76b6bf1e2bbd7fe266dae4a643315253ced51fa3fdf6f7b0e917f2fd60",770   "language": "Python",771   "lines": 394,772   "truncated": false,773   "block": 7,774   "row": 6005775  },776  {777   "path": "scCODA_Glia_to_Neuron.py",778   "sha256": "60a051708c295678bce80401ddd0ceb94892d31b9b25c80d4dcb54dbdb376a05",779   "language": "Python",780   "lines": 86,781   "truncated": false,782   "block": 6,783   "row": 34720784  }785 ]786}