OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/perishky/meffil",4 "url": "https://github.com/perishky/meffil/",5 "host": "github.com",6 "commit": "987394b5a005fa27446820b565bcab01c8c86dde",7 "license": "Artistic-2.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "b48b92dcd182c0808dd414940c83acdf0cca9f4fb644399fbbcc65a299c097a4",14   "language": "License",15   "lines": 202,16   "truncated": false,17   "block": 14,18   "row": 1720619  },20  {21   "path": "R/add-surrogate-variables.r",22   "sha256": "965f4d3ea77a880f01127e3efebcd0ba0f36f26ce0b99e9563cafd3c28f9aec1",23   "language": "R",24   "lines": 76,25   "truncated": false,26   "block": 16,27   "row": 262028  },29  {30   "path": "R/adjust.r",31   "sha256": "b1bc7a82bc074c02b6ad68f99d967767c3de0c531a65ca43f4fc76143684f191",32   "language": "R",33   "lines": 58,34   "truncated": false,35   "block": 16,36   "row": 244137  },38  {39   "path": "R/autosomal-sites.r",40   "sha256": "8422d6fdfd96738b3ca575871aa2a1e69e408b35dcb226b05f8f7ee7f030c28f",41   "language": "R",42   "lines": 11,43   "truncated": false,44   "block": 16,45   "row": 195746  },47  {48   "path": "R/background-correct.r",49   "sha256": "eb962f95ebee6efb5058849b79e7febe1161904b1b7f384c3665e64f6f0c8281",50   "language": "R",51   "lines": 58,52   "truncated": false,53   "block": 16,54   "row": 252255  },56  {57   "path": "R/basenames.r",58   "sha256": "d4a42cbeee151c8e897013a4816dccaa048a802526c64232286471c5c827d94a",59   "language": "R",60   "lines": 22,61   "truncated": false,62   "block": 16,63   "row": 210264  },65  {66   "path": "R/bedgraph.r",67   "sha256": "26250a43e747c52e4a8d1d03071295915a6bd7901172f06a502a9c3695605cb1",68   "language": "R",69   "lines": 46,70   "truncated": false,71   "block": 16,72   "row": 241173  },74  {75   "path": "R/cell-count-qc-plots.r",76   "sha256": "9c4edb4490211261f041e0037ef2372d9e8bca3848d4d2f1de047395a0b5bc50",77   "language": "R",78   "lines": 80,79   "truncated": false,80   "block": 16,81   "row": 285082  },83  {84   "path": "R/cell-counts.r",85   "sha256": "9f7acbb831de92bd581956df43cf6a3ebd24f5081d3eef3737745fd40d50ddca",86   "language": "R",87   "lines": 13,88   "truncated": false,89   "block": 16,90   "row": 197091  },92  {93   "path": "R/cell-type-references.r",94   "sha256": "7ba5d0221d9a0a8915b94a7a9846418fe36a09aef8c967cbb1e7c00f9d4d665b",95   "language": "R",96   "lines": 155,97   "truncated": false,98   "block": 16,99   "row": 3363100  },101  {102   "path": "R/cell-type-specific-methylation.r",103   "sha256": "bd58f1d3f5c014da6141d7abb45ec7cfa4334664efb43c221197c88ba55f589f",104   "language": "R",105   "lines": 58,106   "truncated": false,107   "block": 16,108   "row": 2543109  },110  {111   "path": "R/check-data-frame.r",112   "sha256": "ab7da6b3d3162732d2001029f280ebe36a60d97f95a374e13fe13e4371bdaa9d",113   "language": "R",114   "lines": 23,115   "truncated": false,116   "block": 16,117   "row": 2101118  },119  {120   "path": "R/cnv-matrix.r",121   "sha256": "9c8a55b806de55c52b958bd22e8814ee3658ced821ed152e72be04b1a822eea2",122   "language": "R",123   "lines": 37,124   "truncated": false,125   "block": 16,126   "row": 2261127  },128  {129   "path": "R/cnv-references.r",130   "sha256": "2c8065cd6640ef5d2da9f64f8b9da333682dfa8cf94f0fef1756375255f1c9a2",131   "language": "R",132   "lines": 155,133   "truncated": false,134   "block": 16,135   "row": 3199136  },137  {138   "path": "R/cnv.r",139   "sha256": "2c71446c2340363e1e90eef5be2514eb8d21def059024d76130377eb0e3d1728",140   "language": "R",141   "lines": 186,142   "truncated": false,143   "block": 16,144   "row": 3425145  },146  {147   "path": "R/create-qc-object.r",148   "sha256": "3995eb1df767f44e41000ae6ba4e351c62b640196f810f15d65f97448de9e089",149   "language": "R",150   "lines": 130,151   "truncated": false,152   "block": 16,153   "row": 3092154  },155  {156   "path": "R/create-samplesheet.r",157   "sha256": "07a05acf4c1fb0a9cfb87a6c1577cf7d2be7f517f020547f72aeb748e651be31",158   "language": "R",159   "lines": 58,160   "truncated": false,161   "block": 16,162   "row": 2367163  },164  {165   "path": "R/design-matrix.r",166   "sha256": "ab2796965207074628c0dbba9e30a18541773776d6b56ddd843989b44b59e5a1",167   "language": "R",168   "lines": 162,169   "truncated": false,170   "block": 16,171   "row": 3489172  },173  {174   "path": "R/dups.r",175   "sha256": "90b67b32a2b755f956d4fff4d5c3e4e1a68376adf0ff77376bc063bad0e1f7e5",176   "language": "R",177   "lines": 47,178   "truncated": false,179   "block": 16,180   "row": 2236181  },182  {183   "path": "R/dye-bias-correct.r",184   "sha256": "505f97cb59efcb732c46b05a9fdec14d03f86deaf30ec322959ff48a73ef3cad",185   "language": "R",186   "lines": 41,187   "truncated": false,188   "block": 16,189   "row": 2282190  },191  {192   "path": "R/estimate-cell-counts.r",193   "sha256": "585576ed58abade6dc8da8fb821b8279ac16ad113646abada487f13850289fcc",194   "language": "R",195   "lines": 171,196   "truncated": false,197   "block": 16,198   "row": 3383199  },200  {201   "path": "R/ewas-old.r",202   "sha256": "ef8bdfdc19ecd99e7ff20ae3df96d879b22540b90946f48d9ee23e30abe0e492",203   "language": "R",204   "lines": 365,205   "truncated": false,206   "block": 16,207   "row": 3962208  },209  {210   "path": "R/ewas-report.r",211   "sha256": "f03b576e8dfc84b826cf670ecd78aa51a4137d46ef6d886920fcc2fd950352c5",212   "language": "R",213   "lines": 150,214   "truncated": false,215   "block": 16,216   "row": 3307217  },218  {219   "path": "R/ewas-variable-summaries.r",220   "sha256": "20dc2c6a03cd1dbd2beb6ae40a762958e3ffeb7c3e5c5fbfccbfd577aa1e87dd",221   "language": "R",222   "lines": 268,223   "truncated": false,224   "block": 16,225   "row": 3794226  },227  {228   "path": "R/ewas.r",229   "sha256": "619f091275f1a2a57b5825faaa95dced60d62eaa9791214c64112a07d1da5034",230   "language": "R",231   "lines": 480,232   "truncated": false,233   "block": 16,234   "row": 4095235  },236  {237   "path": "R/extract-beadnum.r",238   "sha256": "fe96742ef27f5be803d86bd7c179428ccdcbe72b939ce53d43799683656dc8d5",239   "language": "R",240   "lines": 29,241   "truncated": false,242   "block": 16,243   "row": 2119244  },245  {246   "path": "R/extract-controls.r",247   "sha256": "da3c43ab183a236724f762003aaac248f375e9f1d9f5056a97972d217a2687bc",248   "language": "R",249   "lines": 144,250   "truncated": false,251   "block": 16,252   "row": 3157253  },254  {255   "path": "R/extract-detection-pvalues.r",256   "sha256": "9a166c7809b02bd5f82b01d7423cb9efcfb251482d74480947a5e14ac3113d17",257   "language": "R",258   "lines": 48,259   "truncated": false,260   "block": 16,261   "row": 2348262  },263  {264   "path": "R/extract-from-samplesheet.r",265   "sha256": "8d2435d5cb3da271369d90460ca89aea9d5a40f6cb738f5e8d567143bfbc2e0b",266   "language": "R",267   "lines": 9,268   "truncated": false,269   "block": 16,270   "row": 1939271  },272  {273   "path": "R/extract-genotypes.r",274   "sha256": "4dcb411ec7faad57373de7e5999a82bbc2ac588afaa0ed47e76556e7bd50e876",275   "language": "R",276   "lines": 36,277   "truncated": false,278   "block": 16,279   "row": 2190280  },281  {282   "path": "R/features.r",283   "sha256": "a6abc89455f3efba94e35fa90f43c9fa954e38f998c9d82b012ffc8cd8ac4896",284   "language": "R",285   "lines": 38,286   "truncated": false,287   "block": 16,288   "row": 2225289  },290  {291   "path": "R/gds.r",292   "sha256": "8e30742befd7bbc5375ef3f91ad170c6a0efcdebef0bc98eee080e47cc0db49d",293   "language": "R",294   "lines": 255,295   "truncated": false,296   "block": 16,297   "row": 3571298  },299  {300   "path": "R/get-beta.r",301   "sha256": "f707755898c20cd01f026156aa5fce1f6adb08cbf43ab3e443a17b00a6040ef6",302   "language": "R",303   "lines": 22,304   "truncated": false,305   "block": 16,306   "row": 2045307  },308  {309   "path": "R/globals.r",310   "sha256": "fde55111d6fd631adb9909d5ed666ca5ac8cbef8c7ccd7d1df035ca96e580dfc",311   "language": "R",312   "lines": 39,313   "truncated": false,314   "block": 16,315   "row": 2260316  },317  {318   "path": "R/handle-outliers.r",319   "sha256": "45a18525709d12bc03f44c728b8d15e9a836def4752505a765e7c0c39ab8c657",320   "language": "R",321   "lines": 39,322   "truncated": false,323   "block": 16,324   "row": 2320325  },326  {327   "path": "R/impute-matrix.r",328   "sha256": "6348dacbfcc0d3e7e225e42ac3d99fdacb01f76a31d51f0701fc2a1eab1555a1",329   "language": "R",330   "lines": 19,331   "truncated": false,332   "block": 16,333   "row": 2022334  },335  {336   "path": "R/isva.r",337   "sha256": "9cc1a9fbbb40dff13057d19dda25fc205b20aee6e2c0257747a835f9dcbd94e0",338   "language": "R",339   "lines": 105,340   "truncated": false,341   "block": 16,342   "row": 2721343  },344  {345   "path": "R/knit-report.r",346   "sha256": "ba08ffccdd7bf57fbd4fd69c244ffeb5b033111edec3c529a41a3df532926bcf",347   "language": "R",348   "lines": 57,349   "truncated": false,350   "block": 16,351   "row": 2343352  },353  {354   "path": "R/load-controls.r",355   "sha256": "d9840120650fc52723d40f9daaf2c1d8555d3547b481bc3b07e39778208854e3",356   "language": "R",357   "lines": 51,358   "truncated": false,359   "block": 16,360   "row": 2498361  },362  {363   "path": "R/load-detection-pvalues.r",364   "sha256": "14aa3e9a36526ed32634965c8c342fda1e79967e365bf2fa41de84f44a8df6cc",365   "language": "R",366   "lines": 42,367   "truncated": false,368   "block": 16,369   "row": 2321370  },371  {372   "path": "R/load-raw-betas.r",373   "sha256": "06cd98fdff060969023891b4d66665903bd2713b260da63f6c83bcad7bea6b22",374   "language": "R",375   "lines": 75,376   "truncated": false,377   "block": 16,378   "row": 2679379  },380  {381   "path": "R/manifest.r",382   "sha256": "36a649f015d6f6d8f6186ccf8abc82a2e8142b5886a4dc34548916a1afdbe009",383   "language": "R",384   "lines": 352,385   "truncated": false,386   "block": 16,387   "row": 3924388  },389  {390   "path": "R/mclapply.r",391   "sha256": "6358905ec5dd376f7631a848d1abaf7097b7da18767bde1c95d47bef16707150",392   "language": "R",393   "lines": 117,394   "truncated": false,395   "block": 16,396   "row": 2934397  },398  {399   "path": "R/methylation-pcs.r",400   "sha256": "572cf785fe9968f43c0d84f0cc606a3940ec4ffc1f1cac21fa01e4eed2c6d0a9",401   "language": "R",402   "lines": 43,403   "truncated": false,404   "block": 16,405   "row": 2391406  },407  {408   "path": "R/most-variable.r",409   "sha256": "4e03e9dabe7de8e6dff0c477ce1c50159f20b4a3b65c1cfebc7474e46ae6270b",410   "language": "R",411   "lines": 72,412   "truncated": false,413   "block": 16,414   "row": 2598415  },416  {417   "path": "R/msg.r",418   "sha256": "3bec60e37c0e8f16149a1a0d299268787b9c8a315d5bc1fead2a4d05ce852877",419   "language": "R",420   "lines": 14,421   "truncated": false,422   "block": 16,423   "row": 1917424  },425  {426   "path": "R/normalization-report.from.betas.r",427   "sha256": "fffe5955a2413f328696f365701fb4a0393b2a8f66504dc026b2710f5d53b28a",428   "language": "R",429   "lines": 180,430   "truncated": false,431   "block": 16,432   "row": 3412433  },434  {435   "path": "R/normalization-report.r",436   "sha256": "af09cda26ec1849882f14a0cfa9a674fb59effd05f3a092185745ef160e74878",437   "language": "R",438   "lines": 441,439   "truncated": false,440   "block": 16,441   "row": 4015442  },443  {444   "path": "R/normalize-dataset.r",445   "sha256": "785da2e485be61fead35efc93786085497be87a43f6fd973724d082b322b81cd",446   "language": "R",447   "lines": 172,448   "truncated": false,449   "block": 16,450   "row": 3395451  },452  {453   "path": "R/normalize-quantiles.r",454   "sha256": "c40e1031b7a91bc14bd8b2cfff0c5870dbb77f938561a884ad33ef094110de03",455   "language": "R",456   "lines": 140,457   "truncated": false,458   "block": 16,459   "row": 3285460  },461  {462   "path": "R/normalize-sample.r",463   "sha256": "30c257b13436df13335ced20d7b281d7ff1e943ffe3930f5fd813a78d5bbd586",464   "language": "R",465   "lines": 75,466   "truncated": false,467   "block": 16,468   "row": 2646469  },470  {471   "path": "R/normalize-samples.r",472   "sha256": "7bbb4a742505db9d494a9ce27498effe6514ff78de1151c0fdecc861488040d3",473   "language": "R",474   "lines": 146,475   "truncated": false,476   "block": 16,477   "row": 3376478  },479  {480   "path": "R/plot-ewas.r",481   "sha256": "0592a6467e9069cf94e0eb1b5e8779d1655227cb172a3ada37f89092ef765611",482   "language": "R",483   "lines": 259,484   "truncated": false,485   "block": 16,486   "row": 3758487  },488  {489   "path": "R/plot-pc-fit.r",490   "sha256": "d599e530057baf98856b73c447771b7c188900da8cd687d8fd9cb679af065eb8",491   "language": "R",492   "lines": 71,493   "truncated": false,494   "block": 16,495   "row": 2777496  },497  {498   "path": "R/qc-report.r",499   "sha256": "bfbf37ff009f9ef24c230c52c668d73e61f91a081b946b338832eb480995a2dc",500   "language": "R",501   "lines": 782,502   "truncated": false,503   "block": 16,504   "row": 4256505  },506  {507   "path": "R/qc.r",508   "sha256": "edd2d13a1581ea6a11689ef6b69dccf77463bb4abf395e3fbc486fc87fd53b3b",509   "language": "R",510   "lines": 74,511   "truncated": false,512   "block": 16,513   "row": 2736514  },515  {516   "path": "R/read-samplesheet.r",517   "sha256": "513b71b20445a28a683b966b1d451cb9a757bbf07024ce4827b4aab24aebeae2",518   "language": "R",519   "lines": 182,520   "truncated": false,521   "block": 16,522   "row": 3355523  },524  {525   "path": "R/rg-to-mu.r",526   "sha256": "d7eac859399d4dd2939681cfb729e4b159f1137da008b75ffe278338de4650ae",527   "language": "R",528   "lines": 35,529   "truncated": false,530   "block": 16,531   "row": 2189532  },533  {534   "path": "R/rg.r",535   "sha256": "34b6757ed196d20824697210fd0dbccde19ed6fe0dc0c8fd0835f339e9bad4b7",536   "language": "R",537   "lines": 37,538   "truncated": false,539   "block": 16,540   "row": 2205541  },542  {543   "path": "R/save-detection-pvalues.r",544   "sha256": "469f1822c32a8748b924b1f67ca9d66fd2484a18c7f1f9419dd948a810e0f4a6",545   "language": "R",546   "lines": 69,547   "truncated": false,548   "block": 16,549   "row": 2622550  },551  {552   "path": "R/shrink.r",553   "sha256": "c3633492442933caa212462e8577f080cf9c44784b64be69170203d03d0e22d0",554   "language": "R",555   "lines": 97,556   "truncated": false,557   "block": 16,558   "row": 2762559  },560  {561   "path": "R/simplify-variable.r",562   "sha256": "3e5981a0b59809704f70fd24ea251cf303f8b412d74dac51d893107fd4d2c061",563   "language": "R",564   "lines": 16,565   "truncated": false,566   "block": 16,567   "row": 2012568  },569  {570   "path": "R/site-subsets.r",571   "sha256": "d27905734ddbccefed102f5fb9ba90f47d289614d55880eafc36e586f4fa67fb",572   "language": "R",573   "lines": 96,574   "truncated": false,575   "block": 16,576   "row": 2776577  },578  {579   "path": "R/snp-betas.r",580   "sha256": "e65134eb9acc688fb75641006cf0011e641f70e41f794e5797eca3f8157ebc39",581   "language": "R",582   "lines": 43,583   "truncated": false,584   "block": 16,585   "row": 2249586  },587  {588   "path": "R/snp-concordance.r",589   "sha256": "a39a84fdcce219d2c01f2f70e203e48e29a9919e332dcc2c0feaaddc24883c9c",590   "language": "R",591   "lines": 105,592   "truncated": false,593   "block": 16,594   "row": 2995595  },596  {597   "path": "R/winsorize.r",598   "sha256": "6e6e3c758719d16894d74c15fbc55615d0a5b336ecf2ef63bd35dceac7e854fe",599   "language": "R",600   "lines": 21,601   "truncated": false,602   "block": 16,603   "row": 2001604  },605  {606   "path": "data-raw/andrews-bakulski-reference.r",607   "sha256": "d09734a265dc55ab79e98a6921842d3af7f57dadd9e13e880740212c975cd08f",608   "language": "R",609   "lines": 35,610   "truncated": false,611   "block": 16,612   "row": 2264613  },614  {615   "path": "data-raw/combined-cord-reference.r",616   "sha256": "b2dbd763140fe8cdb79a1b0ae83ba1d71a545204098c967481575135652f67e9",617   "language": "R",618   "lines": 50,619   "truncated": false,620   "block": 16,621   "row": 2460622  },623  {624   "path": "data-raw/dlpfc-reference.r",625   "sha256": "58f48f7cbf9690a005373416980150d199e04af179d81e2e73f81aef3eb263c4",626   "language": "R",627   "lines": 37,628   "truncated": false,629   "block": 16,630   "row": 2306631  },632  {633   "path": "data-raw/geo.r",634   "sha256": "cc26bda31e178aa8ddffe94827c168e9643f78dfafcc610e0226aee5644286a9",635   "language": "R",636   "lines": 72,637   "truncated": false,638   "block": 16,639   "row": 2366640  },641  {642   "path": "data-raw/gervin-lyle-reference.r",643   "sha256": "b76411444d9fcb5b4340eec470994d2a8eb4e4fc0dc9353250dde465a0786b10",644   "language": "R",645   "lines": 44,646   "truncated": false,647   "block": 16,648   "row": 2312649  },650  {651   "path": "data-raw/globals.r",652   "sha256": "0cc81a0dab88b39b5bfae6a420b10ba8a77571243792dc40d9e3ec08b7ad318f",653   "language": "R",654   "lines": 110,655   "truncated": false,656   "block": 16,657   "row": 2674658  },659  {660   "path": "data-raw/gse167998-reference.r",661   "sha256": "e939530648f638df891f664ae60f943a540a3bad6a9d82c407c7733ad74e13bd",662   "language": "R",663   "lines": 78,664   "truncated": false,665   "block": 16,666   "row": 2650667  },668  {669   "path": "data-raw/gse35069-references.r",670   "sha256": "e3e35b6cdd3db242ef2f3fd4786361ad8f48b64c87d9d4ca1c4e4775f3d558fc",671   "language": "R",672   "lines": 125,673   "truncated": false,674   "block": 16,675   "row": 3158676  },677  {678   "path": "data-raw/gse68456-reference.r",679   "sha256": "1f235a18d875155acef0e4528a38d1c81c1694b198447efa300afd6bc79b0132",680   "language": "R",681   "lines": 63,682   "truncated": false,683   "block": 16,684   "row": 2438685  },686  {687   "path": "data-raw/idoloptimized-references.r",688   "sha256": "162dafdd43e53752471a23a1f26899da73a9787916789af4817cbf6628dcc058",689   "language": "R",690   "lines": 67,691   "truncated": false,692   "block": 16,693   "row": 2506694  },695  {696   "path": "data-raw/load-450k-manifest.r",697   "sha256": "fc23a3a2ce52d52249c2c1eb3841966c710f1479c98982fa09c9475a16ef4720",698   "language": "R",699   "lines": 38,700   "truncated": false,701   "block": 16,702   "row": 2237703  },704  {705   "path": "data-raw/load-epic-manifest.r",706   "sha256": "cd19f7a7c9545dd57e020bab519ee9a0bd89bec466ef44222208a7e7c3b77d0c",707   "language": "R",708   "lines": 40,709   "truncated": false,710   "block": 16,711   "row": 2427712  },713  {714   "path": "data-raw/load-epic2-manifest.r",715   "sha256": "05fc87e1e2e49aed7954611a013139d92fdc7dce511d4a206d5c3737aa38a42f",716   "language": "R",717   "lines": 78,718   "truncated": false,719   "block": 16,720   "row": 2732721  },722  {723   "path": "data-raw/load-mouse-manifest.r",724   "sha256": "305d3e471957d5d29687ad4881b4836a7f6a5b485eeecd750e66a36f51b7bb8b",725   "language": "R",726   "lines": 49,727   "truncated": false,728   "block": 16,729   "row": 2496730  },731  {732   "path": "data-raw/load-msa-manifest.r",733   "sha256": "45492ad2da43af63fd2160fcd021f5e4f1abc14af8997ecd11c4697b4539cb37",734   "language": "R",735   "lines": 54,736   "truncated": false,737   "block": 16,738   "row": 2423739  },740  {741   "path": "data-raw/minfiEPIC.r",742   "sha256": "61182da6f250e0625a18bc6c7636405a7d8c5226bf73ba75bb84ee2281b7e861",743   "language": "R",744   "lines": 254,745   "truncated": false,746   "block": 16,747   "row": 3789748  },749  {750   "path": "data-raw/saliva-gse147318-reference.r",751   "sha256": "5e5d9a8f5f47791ceeaea950234a2d399b732599394305a73222d38a2b6ebf5b",752   "language": "R",753   "lines": 107,754   "truncated": false,755   "block": 16,756   "row": 2846757  },758  {759   "path": "data-raw/saliva-reference.r",760   "sha256": "01b63e445dd6f2d630f3806f7541c9ee5befcaaa8ce379c774b4cf66e7258a55",761   "language": "R",762   "lines": 75,763   "truncated": false,764   "block": 16,765   "row": 2599766  },767  {768   "path": "inst/reports/blank.rmd",769   "sha256": "e16f1596201850fd4a63680b27f603cb64e67176159be3d8ed78a4403fdb1700",770   "language": "R",771   "lines": 1,772   "truncated": false,773   "block": 6,774   "row": 20097775  },776  {777   "path": "inst/reports/cell-counts.rmd",778   "sha256": "fc5ec5fc97373d3ee294d1736d5df1e7333d58422fe8f2cc9f98355e0ff10acb",779   "language": "R",780   "lines": 21,781   "truncated": false,782   "block": 16,783   "row": 2031784  },785  {786   "path": "inst/reports/cpg-plot.rmd",787   "sha256": "df03a01e197518aeac5d6c8fa946757f30cf6267d68e820a4c74d2060df07bef",788   "language": "R",789   "lines": 18,790   "truncated": false,791   "block": 16,792   "row": 1977793  },794  {795   "path": "inst/reports/ewas-covariate.rmd",796   "sha256": "b628ba00460afed7efaef97b5aeffbff878eaa91af946aae5d3e0bb1ebec888e",797   "language": "R",798   "lines": 17,799   "truncated": false,800   "block": 16,801   "row": 1947802  },803  {804   "path": "inst/reports/ewas-report.rmd",805   "sha256": "53fea7cdcd02d9ca96728f215057a3aba08a5a4da70c8360cc98d8ae2acabefc",806   "language": "R",807   "lines": 137,808   "truncated": false,809   "block": 16,810   "row": 2703811  },812  {813   "path": "inst/reports/genotype-concordance.rmd",814   "sha256": "2ec7fb849ea28f759eea254b98fc259fa2e0618b69ba4960780fdd28ac03ef36",815   "language": "R",816   "lines": 42,817   "truncated": false,818   "block": 16,819   "row": 2134820  },821  {822   "path": "inst/reports/manhattan-plot.rmd",823   "sha256": "5a9f718bc37eb942be26aa3dbb1defb5708faba4dc397982d05cd11c950bb5f2",824   "language": "R",825   "lines": 8,826   "truncated": false,827   "block": 16,828   "row": 1906829  },830  {831   "path": "inst/reports/missing.rmd",832   "sha256": "8ce43c29a64f4e36a69e7dc2232f5f808ccde922937fcab8b8cf8f05aba6de3a",833   "language": "R",834   "lines": 1,835   "truncated": false,836   "block": 16,837   "row": 1857838  },839  {840   "path": "inst/reports/normalization-report.from.betas.rmd",841   "sha256": "965e62421ef6f7a8d528bbd1b186cc4e7ee1aab62a366834678e4fccce92bf03",842   "language": "R",843   "lines": 87,844   "truncated": false,845   "block": 16,846   "row": 2531847  },848  {849   "path": "inst/reports/normalization-report.rmd",850   "sha256": "6df544d5d459056532534a43c8475cf573c6feb67b537d3aa95c6d520cd2b39a",851   "language": "R",852   "lines": 164,853   "truncated": false,854   "block": 16,855   "row": 2940856  },857  {858   "path": "inst/reports/plot.rmd",859   "sha256": "3ec061d1eec39e4d208073011e0032787a43d83511009de1f65786b7912225a6",860   "language": "R",861   "lines": 3,862   "truncated": false,863   "block": 16,864   "row": 1859865  },866  {867   "path": "inst/reports/qc-report.rmd",868   "sha256": "6dfcc0f279a540424b87d21b24126e589c400660f8935bb648e20fb87c0f3967",869   "language": "R",870   "lines": 201,871   "truncated": false,872   "block": 16,873   "row": 3312874  },875  {876   "path": "inst/reports/qq-plot.rmd",877   "sha256": "1ac8e3f1a83809d09e8d816bfa3b879419aad3f4e25f69ad91f5f29e0a818d5b",878   "language": "R",879   "lines": 7,880   "truncated": false,881   "block": 16,882   "row": 1887883  },884  {885   "path": "inst/reports/wide-plot.rmd",886   "sha256": "7d15d4a178f7189636b7d94bd84f84fb8cb5e0c8e59d4f6a0c447f12648791c6",887   "language": "R",888   "lines": 7,889   "truncated": false,890   "block": 16,891   "row": 1886892  },893  {894   "path": "install-automatic.r",895   "sha256": "9fb446244d1b289a2a15ad076384f29fe3b330e06c9dbba764c713fb0a67f825",896   "language": "R",897   "lines": 6,898   "truncated": false,899   "block": 16,900   "row": 1912901  },902  {903   "path": "install-manual.r",904   "sha256": "256b111226f6ad720cfb5f4bb0d302d6a8c380409cd67b00a943b69b4ff786f9",905   "language": "R",906   "lines": 28,907   "truncated": false,908   "block": 16,909   "row": 2047910  },911  {912   "path": "readme.md",913   "sha256": "209d27bdacf11df59bc50550b44c56bf6341c7a6f47fdbce7b9a5d9841a41e9c",914   "language": "Text",915   "lines": 226,916   "truncated": false,917   "block": 16,918   "row": 7599919  },920  {921   "path": "regenerate.r",922   "sha256": "c4824ab7203035406efb36d5d61c5ae3b3f0f6acfccc22d4b13966abea75600b",923   "language": "R",924   "lines": 21,925   "truncated": false,926   "block": 16,927   "row": 1973928  },929  {930   "path": "tests/450k-and-epic.rmd",931   "sha256": "7e60c56877c717429817b79c91f9ff5ec45fcf235657de2fff82f8e1fd71e18a",932   "language": "R",933   "lines": 96,934   "truncated": false,935   "block": 16,936   "row": 2561937  },938  {939   "path": "tests/450k-demo.rmd",940   "sha256": "29d938bbc2adf0ff18c34a356650706fe3757d84462457706971a8ef334562d2",941   "language": "R",942   "lines": 116,943   "truncated": false,944   "block": 16,945   "row": 2699946  },947  {948   "path": "tests/GSE86831.rmd",949   "sha256": "736637de206b1debdf311b9313c4cc0a4a6edf408728419b84987382c192649c",950   "language": "R",951   "lines": 104,952   "truncated": false,953   "block": 16,954   "row": 2651955  },956  {957   "path": "tests/cnv.rmd",958   "sha256": "e1031a4da1604e84149b02b9b2bc1b9709b403150f1a217eef41d881a4de0112",959   "language": "R",960   "lines": 128,961   "truncated": false,962   "block": 16,963   "row": 2865964  },965  {966   "path": "tests/complex-demo.rmd",967   "sha256": "a5c8eeb549ee55fa111c68577bdebfc681d35f7c7e2f4c1ec8e0f72e88c4d7e0",968   "language": "R",969   "lines": 122,970   "truncated": false,971   "block": 16,972   "row": 2672973  },974  {975   "path": "tests/cord.rmd",976   "sha256": "80dc1bcf41727dc28181320eef62bf6694a160d964c90cb08b8af923de5b72bd",977   "language": "R",978   "lines": 274,979   "truncated": false,980   "block": 16,981   "row": 3736982  },983  {984   "path": "tests/dataset-450k-demo.r",985   "sha256": "80be7d4af2c337ca479b9b49a697d6acb4da998c59d752daeda2c80cc26d3b62",986   "language": "R",987   "lines": 29,988   "truncated": false,989   "block": 16,990   "row": 2105991  },992  {993   "path": "tests/dataset-450k-demo.rmd",994   "sha256": "7042251bd88ad753bf516cae2ff279ec1e0398054acbdd9639c6b2b38c08b898",995   "language": "R",996   "lines": 14,997   "truncated": false,998   "block": 16,999   "row": 19561000  },1001  {1002   "path": "tests/dataset-450k-lead.r",1003   "sha256": "4af2c75b1f31d7b2b0d392961b66e96f4ce3bb90ea2f68b553b6ee09afa61cd2",1004   "language": "R",1005   "lines": 33,1006   "truncated": false,1007   "block": 16,1008   "row": 22171009  },1010  {1011   "path": "tests/dataset-450k-lead.rmd",1012   "sha256": "29005d7f119e7891fd3500a22d07ed370317856e6d4075fa6db260de8b2531fe",1013   "language": "R",1014   "lines": 15,1015   "truncated": false,1016   "block": 16,1017   "row": 19741018  },1019  {1020   "path": "tests/dataset-epic-demo.r",1021   "sha256": "b32ebb6f61433f76c769f424d9085519b0a3f61743ddb834c24eb199584b0e00",1022   "language": "R",1023   "lines": 21,1024   "truncated": false,1025   "block": 16,1026   "row": 20381027  },1028  {1029   "path": "tests/dataset-epic-demo.rmd",1030   "sha256": "55d934f2cae0c038763e53a5a2d6ca65d0b5bb7ae9e0ae265b04c802c72764a0",1031   "language": "R",1032   "lines": 13,1033   "truncated": false,1034   "block": 16,1035   "row": 19311036  },1037  {1038   "path": "tests/dataset-epic2-demo.r",1039   "sha256": "bf86ebd6ea8440811bf3eddf512612a0f27733534df3cd71b088bdfbb3e9dd9a",1040   "language": "R",1041   "lines": 20,1042   "truncated": false,1043   "block": 16,1044   "row": 20291045  },1046  {1047   "path": "tests/dataset-epic2-demo.rmd",1048   "sha256": "4624811beda3f69e2e058f5c2ddfe380e88448bc7bb6d545d9d05a3d56ce6ad8",1049   "language": "R",1050   "lines": 12,1051   "truncated": false,1052   "block": 16,1053   "row": 19291054  },1055  {1056   "path": "tests/epic-demo.rmd",1057   "sha256": "d059369f6ac32f3e702276d1a4d19f39b28bad1029cffab041ee90d00f78562c",1058   "language": "R",1059   "lines": 115,1060   "truncated": false,1061   "block": 16,1062   "row": 26861063  },1064  {1065   "path": "tests/epic2-demo.rmd",1066   "sha256": "581addd8724e45538267f786907a9c2d7abaa2707771be10d6e28d60571ef548",1067   "language": "R",1068   "lines": 183,1069   "truncated": false,1070   "block": 16,1071   "row": 29981072  },1073  {1074   "path": "tests/ewas.rmd",1075   "sha256": "265c0cc131adee11ee1c2c9303582db13bc6180391543b86e4a8a166c6327c38",1076   "language": "R",1077   "lines": 264,1078   "truncated": false,1079   "block": 16,1080   "row": 35111081  },1082  {1083   "path": "tests/gds.rmd",1084   "sha256": "7c89b6c6d0a649878597c4eac83c5db41c62cc2e6759e5c52a3729532f2f4866",1085   "language": "R",1086   "lines": 407,1087   "truncated": false,1088   "block": 16,1089   "row": 37601090  },1091  {1092   "path": "tests/knit.r",1093   "sha256": "43b362cc4ad6fedb64ce055f2818ea53b131b9e18eb74f079d8ccec1bb33e5e0",1094   "language": "R",1095   "lines": 15,1096   "truncated": false,1097   "block": 16,1098   "row": 19401099  },1100  {1101   "path": "tests/minfi.rmd",1102   "sha256": "dad41b1a1c29be510d747fbf5ec536f853f115b7105baabe36f0fac1ab63140f",1103   "language": "R",1104   "lines": 340,1105   "truncated": false,1106   "block": 16,1107   "row": 36911108  },1109  {1110   "path": "tests/random.rmd",1111   "sha256": "02ecd94bc83dfc34516c9037b81f083a79353b825aacd7c27dd43be8a1f06f43",1112   "language": "R",1113   "lines": 130,1114   "truncated": false,1115   "block": 16,1116   "row": 28881117  }1118 ]1119}