OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/sanderslab/magellanmapper",4 "url": "https://github.com/sanderslab/magellanmapper",5 "host": "github.com",6 "commit": "fa83b78900570cb74f61975814ea17573efafada",7 "license": "BSD-3-Clause",8 "license_confirmed_by": "license file LICENSE.txt",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE.txt",13 "sha256": "7c67aa84a7b243abf7f415c27702fcbbff4ea54360153656f92393197291cb78",14 "language": "License",15 "lines": 12,16 "truncated": false,17 "block": 20,18 "row": 880919 },20 {21 "path": "README.md",22 "sha256": "c6c609fd5a9e83b78dbd95fea7bc58037835921807944bf46763b6c7561eaa21",23 "language": "Text",24 "lines": 110,25 "truncated": false,26 "block": 21,27 "row": 314228 },29 {30 "path": "bin/build_bf.sh",31 "sha256": "ad322b53c5fab7b168b944ade5150d328696ff06b2eb562db6e6e0431bc7b0a0",32 "language": "Shell",33 "lines": 95,34 "truncated": false,35 "block": 21,36 "row": 253137 },38 {39 "path": "bin/build_deps.sh",40 "sha256": "e1458de1b49ed8a3da8d43ac51f2f33bdbd7c7cc2bce8a08c88a75e621d2ebc7",41 "language": "Shell",42 "lines": 147,43 "truncated": false,44 "block": 21,45 "row": 267846 },47 {48 "path": "bin/build_docs.sh",49 "sha256": "d195be8288a515f2fa37335f9e688ecbb6616ee6df0b7ec7457e8e7200bc85e5",50 "language": "Shell",51 "lines": 75,52 "truncated": false,53 "block": 21,54 "row": 233355 },56 {57 "path": "bin/build_jb.sh",58 "sha256": "22b892c275428dd170293e3878ab6e35baf46de9bbae20e66c5b0580b9c56328",59 "language": "Shell",60 "lines": 107,61 "truncated": false,62 "block": 21,63 "row": 254264 },65 {66 "path": "bin/build_jre.sh",67 "sha256": "ce2f516b0d09830222c2cf386f71ec59df156a0ddf4196be9b9c36d7a30753ef",68 "language": "Shell",69 "lines": 55,70 "truncated": false,71 "block": 21,72 "row": 221673 },74 {75 "path": "bin/build_se.sh",76 "sha256": "b1e031c2af3ee8cd4977bf55806b5ff3eafe918000b617971f00e5ac1fda92fa",77 "language": "Shell",78 "lines": 159,79 "truncated": false,80 "block": 21,81 "row": 270582 },83 {84 "path": "bin/deploy.sh",85 "sha256": "6a54d941d9671f493ca5bf9cc6eca5e566b2334065cecb622a9ca91a6f597b81",86 "language": "Shell",87 "lines": 132,88 "truncated": false,89 "block": 21,90 "row": 265191 },92 {93 "path": "bin/libmag.sh",94 "sha256": "f520d40adeeb457a92a8130fdc6d7a4c4800492ca91af1855316bbf2c85fadb2",95 "language": "Shell",96 "lines": 425,97 "truncated": false,98 "block": 21,99 "row": 2770100 },101 {102 "path": "bin/pipelines.sh",103 "sha256": "40e4f6f04dbca2b58b07336a4ebd30c52daf229860f01cc32dab3b6433f534dd",104 "language": "Shell",105 "lines": 751,106 "truncated": false,107 "block": 21,108 "row": 2787109 },110 {111 "path": "bin/process_nohup.sh",112 "sha256": "437c23cf8805ed5a904ec9cd57ee9a769105cefd695034ef24c78efa5c98f302",113 "language": "Shell",114 "lines": 105,115 "truncated": false,116 "block": 21,117 "row": 2546118 },119 {120 "path": "bin/runaltpy.sh",121 "sha256": "235327c4692082631adf07481f3fcad60c9210b58e535da8cbcf3996f165a3cd",122 "language": "Shell",123 "lines": 17,124 "truncated": false,125 "block": 21,126 "row": 2046127 },128 {129 "path": "bin/sample_cmds.sh",130 "sha256": "577ef4efa6fab1b865d06688e8b392b5f1c70a342a0815a3c695566271da6b14",131 "language": "Shell",132 "lines": 254,133 "truncated": false,134 "block": 21,135 "row": 2763136 },137 {138 "path": "bin/sample_cmds_bash.ipynb",139 "sha256": "2e6082564f2f4afa44ddaa73787ce6e3688f40dd769ec3f9e151359edbd6e08b",140 "language": "Jupyter",141 "lines": 591,142 "truncated": false,143 "block": 20,144 "row": 8520145 },146 {147 "path": "bin/sample_settings.sh",148 "sha256": "1101f5a65fee8adb8c6e3c41ec3a9438ebb78166c21c1e1beffec72e1142b0c3",149 "language": "Shell",150 "lines": 48,151 "truncated": false,152 "block": 21,153 "row": 2383154 },155 {156 "path": "bin/setup_cxfreeze.py",157 "sha256": "2cfece851002f781d3e383a9062c35a66b7af67a891cb287137139ea24d44e95",158 "language": "Python",159 "lines": 31,160 "truncated": false,161 "block": 20,162 "row": 13768163 },164 {165 "path": "bin/setup_multi_venvs.sh",166 "sha256": "1a4b4f04562bd57e2e36930fca7bd8d4064fe2d72b67c85a63730ad12d64d275",167 "language": "Shell",168 "lines": 92,169 "truncated": false,170 "block": 21,171 "row": 2492172 },173 {174 "path": "bin/setup_server.sh",175 "sha256": "9f1dde840115c7b5b4b658181ea753a228a580db8ad6ec75f9b61945a7539ba5",176 "language": "Shell",177 "lines": 246,178 "truncated": false,179 "block": 21,180 "row": 2726181 },182 {183 "path": "bin/setup_venv.sh",184 "sha256": "6d2781746cbf5aaf4904a58b8611d4e1982d4fa3c700d2cc046067e7e46e530b",185 "language": "Shell",186 "lines": 192,187 "truncated": false,188 "block": 21,189 "row": 2712190 },191 {192 "path": "bin/stitch.sh",193 "sha256": "bd781112c9a875f21f9418471f40fae0ee9fa311d24f87e660a9630cbe63c1e8",194 "language": "Shell",195 "lines": 185,196 "truncated": false,197 "block": 21,198 "row": 2719199 },200 {201 "path": "bin/surf_clean.sh",202 "sha256": "e4c0826dbb49de15d5eecd7368c674fa77ffc8c1a3a806031ebe757c6ca3460e",203 "language": "Shell",204 "lines": 100,205 "truncated": false,206 "block": 21,207 "row": 2506208 },209 {210 "path": "clrstats/R/clrstats.R",211 "sha256": "5255ad3230e5012535f4d34a48ad1335b39f382498653f9d2e52b1a0b9cf439f",212 "language": "R",213 "lines": 1303,214 "truncated": false,215 "block": 21,216 "row": 1570217 },218 {219 "path": "clrstats/R/jitter_plot.R",220 "sha256": "eabf5fda1d010451a96fb667aec2211cec6f400e65ef2d74850220768b0f58c7",221 "language": "R",222 "lines": 585,223 "truncated": false,224 "block": 21,225 "row": 1444226 },227 {228 "path": "clrstats/R/volcano_plot.R",229 "sha256": "7312b4bc55b9c401d40ac9e509c6bdf1f8abcd77baf80399377740b7be7b654b",230 "language": "R",231 "lines": 143,232 "truncated": false,233 "block": 21,234 "row": 1077235 },236 {237 "path": "clrstats/run.R",238 "sha256": "6186641405b3e342857dbe063de0f587f4da6f3a5565124518b05948e5bbbd18",239 "language": "R",240 "lines": 65,241 "truncated": false,242 "block": 21,243 "row": 854244 },245 {246 "path": "docs/conf.py",247 "sha256": "3b624e471b833d75d11ea57948f9f8a7f8cc21d49edb5881f17b01d6aef83d05",248 "language": "Python",249 "lines": 253,250 "truncated": false,251 "block": 20,252 "row": 19397253 },254 {255 "path": "magmap/atlas/atlas_refiner.py",256 "sha256": "d9a2c1d25f94691a967731e6319ab86b1d40c01908b2523de4cab8885768486e",257 "language": "Python",258 "lines": 1829,259 "truncated": false,260 "block": 21,261 "row": 476262 },263 {264 "path": "magmap/atlas/edge_seg.py",265 "sha256": "c78c05aebd681e2edfbee0f3eadc38e0177533b20469c640f36c88b56687c1e8",266 "language": "Python",267 "lines": 582,268 "truncated": false,269 "block": 20,270 "row": 21957271 },272 {273 "path": "magmap/atlas/labels_meta.py",274 "sha256": "bdf4c7d36227b40e0c752830c1783fcc277bddc021ddea27af8aaaf19ef9f1d6",275 "language": "Python",276 "lines": 113,277 "truncated": false,278 "block": 20,279 "row": 17519280 },281 {282 "path": "magmap/atlas/ontology.py",283 "sha256": "3d5f1e697e9a29c08bd5fe9c9b4a615a9ee36966dfaa9e78231dc9e819ad68cf",284 "language": "Python",285 "lines": 1020,286 "truncated": false,287 "block": 21,288 "row": 234289 },290 {291 "path": "magmap/atlas/reg_tasks.py",292 "sha256": "78d00bcd95c8d1b3012eac7714833c38d79ce23843f33997c3541205e934600c",293 "language": "Python",294 "lines": 71,295 "truncated": false,296 "block": 20,297 "row": 16404298 },299 {300 "path": "magmap/atlas/register.py",301 "sha256": "acc754e3d3732eb2be0ca8f5e5eee81c006252e3e1ef4e792736ca89e89c7183",302 "language": "Python",303 "lines": 2636,304 "truncated": false,305 "block": 21,306 "row": 520307 },308 {309 "path": "magmap/atlas/transformer.py",310 "sha256": "23c02b0824ac6d0f3f67ee8b73fbbd91e955030ef40e5fe5f41a15d5c624230d",311 "language": "Python",312 "lines": 393,313 "truncated": false,314 "block": 20,315 "row": 21167316 },317 {318 "path": "magmap/brain_globe/bg_controller.py",319 "sha256": "e980b52ef82023c19235d74156636166aef2e6306098e81f8c8838b9b1890c67",320 "language": "Python",321 "lines": 204,322 "truncated": false,323 "block": 20,324 "row": 19114325 },326 {327 "path": "magmap/brain_globe/bg_model.py",328 "sha256": "e3e100e6dfc163a26590a7ac605d9fa27704dfd3b9b94b5d4102eed34d065be2",329 "language": "Python",330 "lines": 115,331 "truncated": false,332 "block": 20,333 "row": 17539334 },335 {336 "path": "magmap/cloud/aws.py",337 "sha256": "df5ed5731b7c2c146a074b52afac4e625c49fed7ac7d34737d302a1947c21b92",338 "language": "Python",339 "lines": 503,340 "truncated": false,341 "block": 20,342 "row": 21358343 },344 {345 "path": "magmap/cloud/notify.py",346 "sha256": "117fa2ac61ff312d71fbc4588f4c6753c09bd13b009406c3a25b3e24a90c3d64",347 "language": "Python",348 "lines": 39,349 "truncated": false,350 "block": 20,351 "row": 14209352 },353 {354 "path": "magmap/cv/chunking.py",355 "sha256": "28c3b62ace3253249ff0a9ffb8c7f779a33cb00cbba2d81d721e908dd84b7359",356 "language": "Python",357 "lines": 445,358 "truncated": false,359 "block": 20,360 "row": 21244361 },362 {363 "path": "magmap/cv/classifier.py",364 "sha256": "3c19504d22a16b35df53159014bf55a75aaa00f43c927a6b6eade61880f9c612",365 "language": "Python",366 "lines": 353,367 "truncated": false,368 "block": 20,369 "row": 20854370 },371 {372 "path": "magmap/cv/colocalizer.py",373 "sha256": "b10c41f9a2e2c41879dfe7a3b6c6048f8bff589da30a0ba5988e6543d7407bc4",374 "language": "Python",375 "lines": 599,376 "truncated": false,377 "block": 20,378 "row": 21910379 },380 {381 "path": "magmap/cv/cv_nd.py",382 "sha256": "16273a220d4ddcd45165e4bea20d87dffb6617d8d9bc3444859bbaba620bcdae",383 "language": "Python",384 "lines": 1239,385 "truncated": false,386 "block": 21,387 "row": 335388 },389 {390 "path": "magmap/cv/detector.py",391 "sha256": "05426c3824b4bc2eea4730c16907ea03c658e889c1448a5c7199b5b7b2df2de6",392 "language": "Python",393 "lines": 1293,394 "truncated": false,395 "block": 21,396 "row": 310397 },398 {399 "path": "magmap/cv/segmenter.py",400 "sha256": "9e58d6773a7677fc925ba3a513acfaa534fc3c04c9a7cd2c06d5fe946b3d6a98",401 "language": "Python",402 "lines": 800,403 "truncated": false,404 "block": 21,405 "row": 137406 },407 {408 "path": "magmap/cv/stack_detect.py",409 "sha256": "a65725ed29c792ec0ce0fa463ad78a2c95c4030dbf570cb18842e7bec4c57e42",410 "language": "Python",411 "lines": 861,412 "truncated": false,413 "block": 21,414 "row": 216415 },416 {417 "path": "magmap/cv/verifier.py",418 "sha256": "62c1fa4f9493d9178838131e427969f285826fa5506429cc11990e30edbe167c",419 "language": "Python",420 "lines": 711,421 "truncated": false,422 "block": 21,423 "row": 42424 },425 {426 "path": "magmap/gui/atlas_editor.py",427 "sha256": "f170f5d0d77ea6671a444225efabaf41e85a3c3ce9860ffc5661ce2e8f505027",428 "language": "Python",429 "lines": 570,430 "truncated": false,431 "block": 20,432 "row": 21829433 },434 {435 "path": "magmap/gui/atlas_threads.py",436 "sha256": "e09081fc552544f4dadcc9f61979486d4bf19e6b66c50add0bf0b49a8357a6e3",437 "language": "Python",438 "lines": 89,439 "truncated": false,440 "block": 20,441 "row": 16825442 },443 {444 "path": "magmap/gui/event_handlers.py",445 "sha256": "7662c71b22c87151a8ebd19593e4824ec091417ff615be6742bcd642e5a2d374",446 "language": "Python",447 "lines": 57,448 "truncated": false,449 "block": 20,450 "row": 15356451 },452 {453 "path": "magmap/gui/image_viewer.py",454 "sha256": "1e633ed01edae9aa1d206be2554471f3c742810d257aae080ead818f32a336df",455 "language": "Python",456 "lines": 113,457 "truncated": false,458 "block": 20,459 "row": 17273460 },461 {462 "path": "magmap/gui/import_threads.py",463 "sha256": "0fb4fca5fea6891095ddeb8d3a01e92748b0f7148af32b44df0f2d2db497885a",464 "language": "Python",465 "lines": 108,466 "truncated": false,467 "block": 20,468 "row": 17562469 },470 {471 "path": "magmap/gui/pixel_display.py",472 "sha256": "52d8062048a3aba65cac30ee9a0cbee9b8a7f9689af2187b2882d0d51dc2ea34",473 "language": "Python",474 "lines": 127,475 "truncated": false,476 "block": 20,477 "row": 18404478 },479 {480 "path": "magmap/gui/plot_editor.py",481 "sha256": "7c47a224fb40fde4b7cfcb7c58b4e0b879f76806a8ef8b7c48e2fc1149c5feaa",482 "language": "Python",483 "lines": 1425,484 "truncated": false,485 "block": 21,486 "row": 416487 },488 {489 "path": "magmap/gui/roi_editor.py",490 "sha256": "1858e659b6caa7e451661336d2e7940a665094233df3d865c2104f70ac41ea9e",491 "language": "Python",492 "lines": 1534,493 "truncated": false,494 "block": 21,495 "row": 438496 },497 {498 "path": "magmap/gui/verifier_editor.py",499 "sha256": "7ac5f1c2f9377dc0015fba377750bb4747103c3ab19c5dfc8ebe0f9b92959117",500 "language": "Python",501 "lines": 264,502 "truncated": false,503 "block": 20,504 "row": 20173505 },506 {507 "path": "magmap/gui/vis_3d.py",508 "sha256": "31365b03dee32ab331975bee3fd54287c66829a53cb1d6bccb91efeb2cb75694",509 "language": "Python",510 "lines": 639,511 "truncated": false,512 "block": 20,513 "row": 22017514 },515 {516 "path": "magmap/gui/vis_handler.py",517 "sha256": "3d5dab02aaef91d520e542ac509451fd4488315725e0c2d866a4d998b59c988d",518 "language": "Python",519 "lines": 207,520 "truncated": false,521 "block": 20,522 "row": 19515523 },524 {525 "path": "magmap/gui/visualizer.py",526 "sha256": "63c0094ca3eb5eb7092d673486d98dbf27cded0713fdd5ae3015fd4413085d38",527 "language": "Python",528 "lines": 4342,529 "truncated": false,530 "block": 21,531 "row": 537532 },533 {534 "path": "magmap/io/cli.py",535 "sha256": "a223522e454daec082be064a5c2d785805f9d6796651e4645001aee0b3d9aa01",536 "language": "Python",537 "lines": 1356,538 "truncated": false,539 "block": 21,540 "row": 372541 },542 {543 "path": "magmap/io/df_io.py",544 "sha256": "f9ceeecd7e1916bd6fb2077343edddcbfca61eea4bf9ae4958841c3e090b8b95",545 "language": "Python",546 "lines": 921,547 "truncated": false,548 "block": 21,549 "row": 141550 },551 {552 "path": "magmap/io/export_regions.py",553 "sha256": "d25f6d695245e6f50741b1938679265244ad4bddee9ea983064a8feef6afee6c",554 "language": "Python",555 "lines": 591,556 "truncated": false,557 "block": 20,558 "row": 21917559 },560 {561 "path": "magmap/io/export_rois.py",562 "sha256": "744dabe7f29df09add96ff261c0f442812d979d1ac8ef76b9f3bf57153b8d362",563 "language": "Python",564 "lines": 293,565 "truncated": false,566 "block": 20,567 "row": 20788568 },569 {570 "path": "magmap/io/export_stack.py",571 "sha256": "6854821402c59468de5e3c1e036403a97050db7ff3ec4e654c03b64e938a4208",572 "language": "Python",573 "lines": 737,574 "truncated": false,575 "block": 21,576 "row": 37577 },578 {579 "path": "magmap/io/importer.py",580 "sha256": "5f93cea1af54de92f4749167144608919f4e61ec57e1fd1ae17d01a8fb068fb1",581 "language": "Python",582 "lines": 1554,583 "truncated": false,584 "block": 21,585 "row": 415586 },587 {588 "path": "magmap/io/libmag.py",589 "sha256": "92fcf4b0cb4e036400e2b27d7a353cbce4e8501e8a3768a670227fcbd8a0eb7d",590 "language": "Python",591 "lines": 1420,592 "truncated": false,593 "block": 21,594 "row": 297595 },596 {597 "path": "magmap/io/load_env.py",598 "sha256": "79cc47f2092e32b1e1d232d33931a52954b359650377063f49917e60b4f9f501",599 "language": "Python",600 "lines": 249,601 "truncated": false,602 "block": 20,603 "row": 19884604 },605 {606 "path": "magmap/io/naming.py",607 "sha256": "85528a717feb22b03de7ce0c7a21f6fc04f659733ac8537ca6863ad98632c9ca",608 "language": "Python",609 "lines": 56,610 "truncated": false,611 "block": 20,612 "row": 15613613 },614 {615 "path": "magmap/io/np_io.py",616 "sha256": "f58bfc3622a74823d4d0e2e96e0e1ed3a66db36c38d2ff3d95606b89eaeaba13",617 "language": "Python",618 "lines": 942,619 "truncated": false,620 "block": 21,621 "row": 211622 },623 {624 "path": "magmap/io/packaging.py",625 "sha256": "76f57db9c1460b25ebbb03ae4ba744f7dedb61c74fd8d19b22295e4e6af54010",626 "language": "Python",627 "lines": 49,628 "truncated": false,629 "block": 20,630 "row": 14639631 },632 {633 "path": "magmap/io/sitk_io.py",634 "sha256": "0d910a72b9f74f50602b1a68a020992a761e730d86df3a9722d598d0886f6b0d",635 "language": "Python",636 "lines": 845,637 "truncated": false,638 "block": 21,639 "row": 62640 },641 {642 "path": "magmap/io/sqlite.py",643 "sha256": "a14b774ad17e11e378f0f91c938da845a7d188db6d5d26950ea7d394ef009bd5",644 "language": "Python",645 "lines": 1108,646 "truncated": false,647 "block": 21,648 "row": 218649 },650 {651 "path": "magmap/io/subproc_io.py",652 "sha256": "8f80c645968a91bc23e122ec7f2957cff4738d98f3fa92e19960caedb3a42434",653 "language": "Python",654 "lines": 106,655 "truncated": false,656 "block": 20,657 "row": 17179658 },659 {660 "path": "magmap/io/yaml_io.py",661 "sha256": "2dfd27da70bddc86e2f738fecd484022e7a2aeae69f14d9c5eea90041bb1b32b",662 "language": "Python",663 "lines": 143,664 "truncated": false,665 "block": 20,666 "row": 17899667 },668 {669 "path": "magmap/plot/colormaps.py",670 "sha256": "d38eeecd223647a8d07a42eddc074cf3d53dfea20f7ed91bd84075d4d5c418f5",671 "language": "Python",672 "lines": 575,673 "truncated": false,674 "block": 20,675 "row": 21911676 },677 {678 "path": "magmap/plot/plot_2d.py",679 "sha256": "41e53ca4bdcedefff7feac7cead89aaa7b63a051fe95f6066742d9a66bb46cd6",680 "language": "Python",681 "lines": 1651,682 "truncated": false,683 "block": 21,684 "row": 436685 },686 {687 "path": "magmap/plot/plot_3d.py",688 "sha256": "7ba7f323b1c3c43da68efd4ad31563762f5d55cb00da890b0bbcaf9358350bb0",689 "language": "Python",690 "lines": 575,691 "truncated": false,692 "block": 20,693 "row": 21706694 },695 {696 "path": "magmap/plot/plot_support.py",697 "sha256": "236f19114a96de8259e0e61b9c879c49653b21d737300715c36220f25cbb7561",698 "language": "Python",699 "lines": 1612,700 "truncated": false,701 "block": 21,702 "row": 426703 },704 {705 "path": "magmap/settings/atlas_prof.py",706 "sha256": "d64b5a231cbedea72b16b9844c341490ab729dd3afe24c5ea614cd28ba84344a",707 "language": "Python",708 "lines": 792,709 "truncated": false,710 "block": 21,711 "row": 77712 },713 {714 "path": "magmap/settings/config.py",715 "sha256": "b2a526b9f98a051b6bbc84dd1a40510c187c7dd28243492a8ba7ab6c601eb6db",716 "language": "Python",717 "lines": 943,718 "truncated": false,719 "block": 20,720 "row": 22039721 },722 {723 "path": "magmap/settings/grid_search_prof.py",724 "sha256": "540a5665eaa17123c33350a8b626ccea42561a91725f23d5dc5a9f6044e8b6d6",725 "language": "Python",726 "lines": 153,727 "truncated": false,728 "block": 20,729 "row": 18764730 },731 {732 "path": "magmap/settings/logs.py",733 "sha256": "703a399a7b693403858fc481ef6669dd501b29c6a58832e9b9252bdc8a5806bb",734 "language": "Python",735 "lines": 155,736 "truncated": false,737 "block": 20,738 "row": 18292739 },740 {741 "path": "magmap/settings/prefs_prof.py",742 "sha256": "06189fe67b63808773fdb04489a543903ce29d24801ccce01b7c07bf537388b5",743 "language": "Python",744 "lines": 37,745 "truncated": false,746 "block": 20,747 "row": 13881748 },749 {750 "path": "magmap/settings/profiles.py",751 "sha256": "d78601084f8c7dc16ce773b494c7069a7c8b03419a3e63302db89d5b7ebc9851",752 "language": "Python",753 "lines": 313,754 "truncated": false,755 "block": 20,756 "row": 20548757 },758 {759 "path": "magmap/settings/roi_prof.py",760 "sha256": "f4431cfddf741ec6cc13a04d9eb007ff2d1d7c25f489e751fc3e5f035dc102b6",761 "language": "Python",762 "lines": 354,763 "truncated": false,764 "block": 20,765 "row": 20815766 },767 {768 "path": "magmap/stats/atlas_stats.py",769 "sha256": "2725a3d2962e8222f7a4b9850b7dccc8a8de5e5ae6c4ec489948c68b7369c57d",770 "language": "Python",771 "lines": 626,772 "truncated": false,773 "block": 20,774 "row": 21936775 },776 {777 "path": "magmap/stats/clustering.py",778 "sha256": "d4f05c2aaa06d71d8f183163ae28068aebbcbadfe3445827ae4a366b21c9e57e",779 "language": "Python",780 "lines": 289,781 "truncated": false,782 "block": 20,783 "row": 20472784 },785 {786 "path": "magmap/stats/mlearn.py",787 "sha256": "dd36ac9821f1d88f65d5fd4fb60ada7c92706bba403e0893424173a4b1bf5fc1",788 "language": "Python",789 "lines": 186,790 "truncated": false,791 "block": 20,792 "row": 19234793 },794 {795 "path": "magmap/stats/vols.py",796 "sha256": "8e04507c5e910dcf326b72b44dc246198126015124b10797b08a08a5832b83ba",797 "language": "Python",798 "lines": 1373,799 "truncated": false,800 "block": 21,801 "row": 399802 },803 {804 "path": "magmap/tests/test_chunking.py",805 "sha256": "824706009b2f87607d9d684fd730fd87fd66ee8341e075ee01a072f2be05c8ea",806 "language": "Python",807 "lines": 70,808 "truncated": false,809 "block": 20,810 "row": 16263811 },812 {813 "path": "magmap/tests/test_classifier.py",814 "sha256": "8d5fa23df171595ae12962e82c724a61797df5d38ce3886cd0c9b2569950fd40",815 "language": "Python",816 "lines": 48,817 "truncated": false,818 "block": 20,819 "row": 15358820 },821 {822 "path": "magmap/tests/test_cv_nd.py",823 "sha256": "19861eb6a4ebfdbf65ba2aea20a3a94e6c5e48ab30ca9dfafeb3841171938b75",824 "language": "Python",825 "lines": 59,826 "truncated": false,827 "block": 20,828 "row": 15368829 },830 {831 "path": "magmap/tests/test_detector.py",832 "sha256": "d89ffce1dbdd9ba06e7b4554bd2053becc91932f47b63754d653856cced9ae79",833 "language": "Python",834 "lines": 75,835 "truncated": false,836 "block": 20,837 "row": 16261838 },839 {840 "path": "magmap/tests/test_image_stack_integration.py",841 "sha256": "51d3819cfc5f9376a48940307094fb3025a89cd7dfe4de9e5a87bfb7899cebad",842 "language": "Python",843 "lines": 76,844 "truncated": false,845 "block": 20,846 "row": 16324847 },848 {849 "path": "magmap/tests/test_img_equality.py",850 "sha256": "825640ea828fef81b8fe72012b434b3fe2efab99ffc55e2dbb7b5842dddd91c3",851 "language": "Python",852 "lines": 33,853 "truncated": false,854 "block": 20,855 "row": 14386856 },857 {858 "path": "magmap/tests/test_libmag.py",859 "sha256": "2dca368dd3b53fa4efd39ff0d668e40213fc04682802240b3e3b454c2809d0e1",860 "language": "Python",861 "lines": 177,862 "truncated": false,863 "block": 20,864 "row": 19588865 },866 {867 "path": "magmap/tests/test_np_io.py",868 "sha256": "644488b4558cc126f6a9dbd78ba90daee246de62a57f6d6d3481eb58824a5a30",869 "language": "Python",870 "lines": 33,871 "truncated": false,872 "block": 20,873 "row": 13931874 },875 {876 "path": "magmap/tests/test_visualizer.py",877 "sha256": "808cc705a4b3e544ec79a201add896574418f6076ffd4b495c72994846f99b26",878 "language": "Python",879 "lines": 57,880 "truncated": false,881 "block": 20,882 "row": 16167883 },884 {885 "path": "run.py",886 "sha256": "b01d559171525f5babdfc956a7c830525c1685dd2a5033575669408241619841",887 "language": "Python",888 "lines": 23,889 "truncated": false,890 "block": 20,891 "row": 13769892 },893 {894 "path": "stitch/ij_bigstitch.py",895 "sha256": "147eeb80e60114fedd218b6bf2a83ba7be568dddff6da71b16501a6d8cb9ff19",896 "language": "Python",897 "lines": 161,898 "truncated": false,899 "block": 20,900 "row": 18306901 },902 {903 "path": "stitch/ij_stitch.py",904 "sha256": "3c9d5a9c10d9924ba898f18680631ee1b0b448f919d11224ef079d568439d170",905 "language": "Python",906 "lines": 47,907 "truncated": false,908 "block": 20,909 "row": 15038910 },911 {912 "path": "stitch/mesospim_to_tif.py",913 "sha256": "b1af7a04f75585a3b5976b631053c1d4eba58c621fe40b920617f4840b7bfa4a",914 "language": "Python",915 "lines": 83,916 "truncated": false,917 "block": 20,918 "row": 16655919 },920 {921 "path": "stitch/tile_config.py",922 "sha256": "b9a431e19080dee6808f4c280d81f71d093fbf3c5a096034e495e0401fadbd45",923 "language": "Python",924 "lines": 70,925 "truncated": false,926 "block": 20,927 "row": 16190928 }929 ]930}