OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/nanoporetech/modkit",4 "url": "https://github.com/nanoporetech/modkit",5 "host": "github.com",6 "commit": "5cecc3fb3a9336068d9e3c68d5c08d678153dd2c",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENCE.txt",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENCE.txt",13 "sha256": "39cc712a23eead54302ce722e2d0cb6eb73d94ad42f407e7153829a4d5154884",14 "language": "License",15 "lines": 323,16 "truncated": false,17 "block": 2,18 "row": 115119 },20 {21 "path": "README.md",22 "sha256": "302d923bf856296f82ddeaac95060ddbab8fb384a75d772bc9028cf7604cbaf7",23 "language": "Text",24 "lines": 186,25 "truncated": false,26 "block": 2,27 "row": 265028 },29 {30 "path": "docs/book-a0b12cfe.js",31 "sha256": "a0b12cfedf44851aa23bbfd6c39a0df8f9c34fdb919d6d22913dcd2041d0b2fa",32 "language": "JavaScript",33 "lines": 843,34 "truncated": false,35 "block": 2,36 "row": 91837 },38 {39 "path": "docs/clipboard-1626706a.min.js",40 "sha256": "1626706afc88d95ebe1173b553ec732c6dc82a576989315fdf5e7779af738a44",41 "language": "JavaScript",42 "lines": 7,43 "truncated": false,44 "block": 2,45 "row": 91046 },47 {48 "path": "docs/elasticlunr-ef4e11c1.min.js",49 "sha256": "ef4e11c157b1e2e89782d30bd726f2d5ff7834ea5e26ad02474325f8b1f126c9",50 "language": "JavaScript",51 "lines": 10,52 "truncated": false,53 "block": 2,54 "row": 91455 },56 {57 "path": "docs/highlight-abc7f01d.js",58 "sha256": "abc7f01d0ce8c64e4ba9e131d651e48ae1a567b2a1254fea8aab03502288de58",59 "language": "JavaScript",60 "lines": 54,61 "truncated": false,62 "block": 2,63 "row": 92064 },65 {66 "path": "docs/mark-09e88c2c.min.js",67 "sha256": "09e88c2cfaf23ea8a37b5681433eafea97033af632ecc948c8c1ee9944647743",68 "language": "JavaScript",69 "lines": 7,70 "truncated": false,71 "block": 2,72 "row": 91273 },74 {75 "path": "docs/searcher-c2a407aa.js",76 "sha256": "401dd78f5dc740ba987ae9aaffa86c9f0c5b9889b1fed7adf30d5078665fe2a4",77 "language": "JavaScript",78 "lines": 555,79 "truncated": false,80 "block": 2,81 "row": 91682 },83 {84 "path": "docs/searchindex-b348220b.js",85 "sha256": "bba7c79255c5264c820f6252e8f6f6dcda8174a5ef76144d78f3181dd78c66bf",86 "language": "JavaScript",87 "lines": 1,88 "truncated": true,89 "block": 2,90 "row": 92191 },92 {93 "path": "docs/toc-869b6773.js",94 "sha256": "869b677373e8bc3c392c965baa5ee51b5863d391c3cba6bfc93a284726945deb",95 "language": "JavaScript",96 "lines": 446,97 "truncated": false,98 "block": 2,99 "row": 917100 },101 {102 "path": "generate_advanced_usage.sh",103 "sha256": "074ca9741ad17edd33087db014a33c0b8e9bad7da440fa7cec01f0eb54c056e6",104 "language": "Shell",105 "lines": 92,106 "truncated": false,107 "block": 2,108 "row": 2551109 },110 {111 "path": "mac_compile_modkit.sh",112 "sha256": "c65fdbc16d8488af61cef003da400bf5ad2e0eeb11bcb68fb0ebc806a0fdc2e9",113 "language": "Shell",114 "lines": 1168,115 "truncated": false,116 "block": 2,117 "row": 2579118 },119 {120 "path": "modkit-core/src/adjust.rs",121 "sha256": "a048324c08f9a9ff4cefca527aa41c3fa3f8f65fb988b5193caf2522af512935",122 "language": "Rust",123 "lines": 438,124 "truncated": false,125 "block": 2,126 "row": 2451127 },128 {129 "path": "modkit-core/src/bedmethyl_util/mod.rs",130 "sha256": "efe0fbafbad412b3a73182885f18c9556e545c4222ceec7843d392e9b0735d37",131 "language": "Rust",132 "lines": 221,133 "truncated": false,134 "block": 2,135 "row": 2425136 },137 {138 "path": "modkit-core/src/bedmethyl_util/subcommands.rs",139 "sha256": "b71feaaa537284e6b582b8384f5ecc30c67827f6679b8d2d8d63fbbc4d0aae25",140 "language": "Rust",141 "lines": 794,142 "truncated": false,143 "block": 2,144 "row": 2467145 },146 {147 "path": "modkit-core/src/command_utils.rs",148 "sha256": "bbf7d1576f769040c2cdfc78709f0251600d1afff75649122245d532a451d32d",149 "language": "Rust",150 "lines": 456,151 "truncated": false,152 "block": 2,153 "row": 2454154 },155 {156 "path": "modkit-core/src/dmr/bedmethyl.rs",157 "sha256": "923445b42d518bc7f9529d6ccc2fce25856405f1b859e2713755a67c404a5ec3",158 "language": "Rust",159 "lines": 453,160 "truncated": false,161 "block": 2,162 "row": 2456163 },164 {165 "path": "modkit-core/src/dmr/beta_diff.rs",166 "sha256": "044d3982ef12bc03a3b4e4dca1a71d8d4589085cca774867db0f1494b47a085f",167 "language": "Rust",168 "lines": 332,169 "truncated": false,170 "block": 2,171 "row": 2435172 },173 {174 "path": "modkit-core/src/dmr/isoform/gtf_reader.rs",175 "sha256": "b8923ddfea3db3ed28fc5158405a51a95fd70653798dcd470c3ca178ad3c8bd9",176 "language": "Rust",177 "lines": 93,178 "truncated": false,179 "block": 2,180 "row": 2407181 },182 {183 "path": "modkit-core/src/dmr/isoform/mod.rs",184 "sha256": "8d1d938d22ac862cfbc250d1d9ff4ba30b3d99824e5d5d80d533a215e01d465c",185 "language": "Rust",186 "lines": 2597,187 "truncated": false,188 "block": 2,189 "row": 2483190 },191 {192 "path": "modkit-core/src/dmr/isoform/pair.rs",193 "sha256": "34f10b7c38794721ec5fcb7e4b02ad63d631c58a2d5a15ae7d340c8c42b8d392",194 "language": "Rust",195 "lines": 358,196 "truncated": false,197 "block": 2,198 "row": 2442199 },200 {201 "path": "modkit-core/src/dmr/isoform/scoring.rs",202 "sha256": "a22396ec743b03746eaacab9f1b987ad8159105d71aa57b2c83db9ba1ac1c820",203 "language": "Rust",204 "lines": 181,205 "truncated": false,206 "block": 2,207 "row": 2415208 },209 {210 "path": "modkit-core/src/dmr/isoform/vis.rs",211 "sha256": "62cc7c2129fbcc27b38907291438917a2239c6e8a88cd37ea0d7617ced47b963",212 "language": "Rust",213 "lines": 265,214 "truncated": false,215 "block": 2,216 "row": 2426217 },218 {219 "path": "modkit-core/src/dmr/llr_model.rs",220 "sha256": "842b2967e0c12e46037e8c26b19eec4afcf33784c8b07d25d4fef38b675c481e",221 "language": "Rust",222 "lines": 437,223 "truncated": false,224 "block": 2,225 "row": 2447226 },227 {228 "path": "modkit-core/src/dmr/mod.rs",229 "sha256": "726a14a8914b74de20b0d2262b66a86daab7e2396eeadbec46e0c94939816287",230 "language": "Rust",231 "lines": 9,232 "truncated": false,233 "block": 2,234 "row": 2387235 },236 {237 "path": "modkit-core/src/dmr/pairwise.rs",238 "sha256": "3b899aa0d44febf06c0f58620434b82e17ab8490183cd8fcc46115e7b991816b",239 "language": "Rust",240 "lines": 310,241 "truncated": false,242 "block": 2,243 "row": 2440244 },245 {246 "path": "modkit-core/src/dmr/single_site.rs",247 "sha256": "cd378f152382a18351aab6df344bdf9057fbdf373476226e4b9c6830370d9923",248 "language": "Rust",249 "lines": 1347,250 "truncated": false,251 "block": 2,252 "row": 2476253 },254 {255 "path": "modkit-core/src/dmr/subcommands.rs",256 "sha256": "42c78e5c3cdee5a231660e5ea652e928443c10db7e70819161edd3a829c9af94",257 "language": "Rust",258 "lines": 1940,259 "truncated": false,260 "block": 2,261 "row": 2482262 },263 {264 "path": "modkit-core/src/dmr/tabix.rs",265 "sha256": "70e9cdc042f795dccb42ab4ccdeda610e07d96d522347dfcd5cf04e582073eb5",266 "language": "Rust",267 "lines": 374,268 "truncated": false,269 "block": 2,270 "row": 2448271 },272 {273 "path": "modkit-core/src/dmr/util.rs",274 "sha256": "e76e517a78a42da2ffbb5387cf3518196e1e09711c54a264b257d59f00aee9f8",275 "language": "Rust",276 "lines": 646,277 "truncated": false,278 "block": 2,279 "row": 2461280 },281 {282 "path": "modkit-core/src/entropy/methylation_entropy.rs",283 "sha256": "2a43d6dc4c0305d9be691e440a12b97bb78774ae9e589ef20be3abda7e56d7b6",284 "language": "Rust",285 "lines": 358,286 "truncated": false,287 "block": 2,288 "row": 2439289 },290 {291 "path": "modkit-core/src/entropy/mod.rs",292 "sha256": "4af3f4b65ddba7555e1e4c8f4a65e68753c2e98351908c37ebfb7c502a84a2fd",293 "language": "Rust",294 "lines": 1695,295 "truncated": false,296 "block": 2,297 "row": 2480298 },299 {300 "path": "modkit-core/src/entropy/subcommand.rs",301 "sha256": "a9ff613293034fac34971a9294ad1f0e80ccc95cf7d98f15680d6729c9cd27e4",302 "language": "Rust",303 "lines": 518,304 "truncated": false,305 "block": 2,306 "row": 2463307 },308 {309 "path": "modkit-core/src/entropy/writers.rs",310 "sha256": "102700b5030bd0602a7994eb858ca947b6c5fb48298bd0f2447f397bec1607a5",311 "language": "Rust",312 "lines": 349,313 "truncated": false,314 "block": 2,315 "row": 2441316 },317 {318 "path": "modkit-core/src/errs.rs",319 "sha256": "f5d6526e7e9fc7228b159261fe032dabe4c6e0fc58e24d782ea86d1763132cf9",320 "language": "Rust",321 "lines": 115,322 "truncated": false,323 "block": 2,324 "row": 2410325 },326 {327 "path": "modkit-core/src/extract/args.rs",328 "sha256": "910e25cc2f19c2444a99fe0c55a2520b77976ad94ab9baefe1f3aacc8b68e603",329 "language": "Rust",330 "lines": 181,331 "truncated": false,332 "block": 2,333 "row": 2433334 },335 {336 "path": "modkit-core/src/extract/mod.rs",337 "sha256": "ccc303cfdfa1185394e942ec8fb389359cdcce1df8c56715d20f0b9353e057de",338 "language": "Rust",339 "lines": 4,340 "truncated": false,341 "block": 2,342 "row": 2385343 },344 {345 "path": "modkit-core/src/extract/subcommand.rs",346 "sha256": "8b1e1449d605fa76da6bc40dfaa2b974b9abf7cc9590d35783383cff411daa45",347 "language": "Rust",348 "lines": 1196,349 "truncated": false,350 "block": 2,351 "row": 2475352 },353 {354 "path": "modkit-core/src/extract/util.rs",355 "sha256": "73958a357e204ffaa7245ca3685f20238e6d4f4be5fcbaa30a711e68b7056583",356 "language": "Rust",357 "lines": 868,358 "truncated": false,359 "block": 2,360 "row": 2470361 },362 {363 "path": "modkit-core/src/extract/writer.rs",364 "sha256": "95939f8d2a2dd62a4bcb20afd55914f4d3f8a594ac8aa462da97794505dd115c",365 "language": "Rust",366 "lines": 452,367 "truncated": false,368 "block": 2,369 "row": 2453370 },371 {372 "path": "modkit-core/src/fasta.rs",373 "sha256": "f8b17f9da2ab45dbbc6a3268cd0712afc61747686146c9962a18c0e5e538b12e",374 "language": "Rust",375 "lines": 368,376 "truncated": false,377 "block": 2,378 "row": 2443379 },380 {381 "path": "modkit-core/src/filter_thresholds.rs",382 "sha256": "d2fee81956726150a36b8635efd6c4254773249387fcd7aa5a872a73e86313de",383 "language": "Rust",384 "lines": 23,385 "truncated": false,386 "block": 2,387 "row": 2391388 },389 {390 "path": "modkit-core/src/genome_positions.rs",391 "sha256": "8791c0f0ad1044515b5a746ba6fb5721c8caf12e4d86dc878219b12ac0ee230f",392 "language": "Rust",393 "lines": 132,394 "truncated": false,395 "block": 2,396 "row": 2414397 },398 {399 "path": "modkit-core/src/hmm.rs",400 "sha256": "ec3b9a97eb348603c19290c937db91bae959c56058b5a87810cf54ede0be4081",401 "language": "Rust",402 "lines": 424,403 "truncated": false,404 "block": 2,405 "row": 2444406 },407 {408 "path": "modkit-core/src/interval_chunks.rs",409 "sha256": "836ca61678ee3f3b582251d13477decd5e6c131000a9a8c79f7ecb5fe15f59dc",410 "language": "Rust",411 "lines": 700,412 "truncated": false,413 "block": 2,414 "row": 2465415 },416 {417 "path": "modkit-core/src/lib.rs",418 "sha256": "e3c6481d656fd11c6763a192bdd27e6ce0ab7ba02cac4c9c8a4bdf4e92daf8b0",419 "language": "Rust",420 "lines": 62,421 "truncated": false,422 "block": 2,423 "row": 2398424 },425 {426 "path": "modkit-core/src/localise/mod.rs",427 "sha256": "8708d91d46a87513f6fbed6ca1052ac516747d6fff38dac152836ab591787a0a",428 "language": "Rust",429 "lines": 2,430 "truncated": false,431 "block": 2,432 "row": 2383433 },434 {435 "path": "modkit-core/src/localise/subcommand.rs",436 "sha256": "837e7cd0ae9044b20a4aaf70bd41287dc2a48e70449d20ada1445b15a1428133",437 "language": "Rust",438 "lines": 310,439 "truncated": false,440 "block": 2,441 "row": 2438442 },443 {444 "path": "modkit-core/src/localise/util.rs",445 "sha256": "142a10d7a4d6a947319ae3b90602d950ddb81c28afa4b03b2647bf3a152f78d1",446 "language": "Rust",447 "lines": 235,448 "truncated": false,449 "block": 2,450 "row": 2429451 },452 {453 "path": "modkit-core/src/logging.rs",454 "sha256": "2954eb0094418d1752c61796bce6d360ef11b5bff01ee96e5e39bbdc7ec4c749",455 "language": "Rust",456 "lines": 111,457 "truncated": false,458 "block": 2,459 "row": 2412460 },461 {462 "path": "modkit-core/src/mod_bam.rs",463 "sha256": "6a7a7f91ef9531bb7120b8ecd8adc95189927f3dbae5ccf995772e8fa137de0a",464 "language": "Rust",465 "lines": 2919,466 "truncated": false,467 "block": 2,468 "row": 2487469 },470 {471 "path": "modkit-core/src/mod_base_code.rs",472 "sha256": "38eaccb0dbca1d7587b2a9c654dde8d4ee24a0c952aa67a75f8bdbe7ff1a0eb9",473 "language": "Rust",474 "lines": 459,475 "truncated": false,476 "block": 2,477 "row": 2450478 },479 {480 "path": "modkit-core/src/modbam_util/check_tags.rs",481 "sha256": "6868192348b8417800c9083720d39c1be966747048ec99a585b11359d8ae5628",482 "language": "Rust",483 "lines": 466,484 "truncated": false,485 "block": 2,486 "row": 2455487 },488 {489 "path": "modkit-core/src/modbam_util/mod.rs",490 "sha256": "62496f4d6ec12ad9476159a305df07cadc0c1008298ee60c011cf5109782b22f",491 "language": "Rust",492 "lines": 2,493 "truncated": false,494 "block": 2,495 "row": 2384496 },497 {498 "path": "modkit-core/src/modbam_util/subcommands.rs",499 "sha256": "bb63958f35b468ac36c829c27fbe10cc53d09226095670f174d3370b73affe9f",500 "language": "Rust",501 "lines": 2475,502 "truncated": false,503 "block": 2,504 "row": 2486505 },506 {507 "path": "modkit-core/src/monoid.rs",508 "sha256": "96bacfd26dae5dcae40f0b64ba13769fc0c28275ba379d72b29805cc92d95ba4",509 "language": "Rust",510 "lines": 374,511 "truncated": false,512 "block": 2,513 "row": 2432514 },515 {516 "path": "modkit-core/src/motifs/args.rs",517 "sha256": "146593acc6c5784c93d153f11ec2e9d082e7a42879b8b825b964a6a9d3c3df8f",518 "language": "Rust",519 "lines": 172,520 "truncated": false,521 "block": 2,522 "row": 2427523 },524 {525 "path": "modkit-core/src/motifs/iupac.rs",526 "sha256": "2722985e5f3c78dacba438c2dd883249f46c078c7581d78848f1ce7511c8a726",527 "language": "Rust",528 "lines": 892,529 "truncated": false,530 "block": 2,531 "row": 2468532 },533 {534 "path": "modkit-core/src/motifs/mod.rs",535 "sha256": "985bd0f03a4e88e1f554836fa67828e04137a73fd4279c5d173b96a9dc4b4f65",536 "language": "Rust",537 "lines": 3651,538 "truncated": false,539 "block": 2,540 "row": 2488541 },542 {543 "path": "modkit-core/src/motifs/motif_bed.rs",544 "sha256": "b1d380c4177d2e8e947ff0272af563ef803b050f754ee7db5ff18f9aa8cdf8d1",545 "language": "Rust",546 "lines": 808,547 "truncated": false,548 "block": 2,549 "row": 2466550 },551 {552 "path": "modkit-core/src/motifs/subcommand.rs",553 "sha256": "f4b2c64d4516d44afe932ad306354f88ae22b5cf0ea4d1eb0075d6c3ebd142cb",554 "language": "Rust",555 "lines": 1131,556 "truncated": false,557 "block": 2,558 "row": 2474559 },560 {561 "path": "modkit-core/src/motifs/util.rs",562 "sha256": "5f0aacd7310af25e42a0ea4f2adda831bfc36fb978355b7479a9f141accf7bd2",563 "language": "Rust",564 "lines": 80,565 "truncated": false,566 "block": 2,567 "row": 2403568 },569 {570 "path": "modkit-core/src/parsing_utils.rs",571 "sha256": "de9e1194f07ba5a1294d0186a1774201c675e1ed0a0dbdde37f88615b1511602",572 "language": "Rust",573 "lines": 53,574 "truncated": false,575 "block": 2,576 "row": 2400577 },578 {579 "path": "modkit-core/src/pileup/base_mods_adapter.rs",580 "sha256": "63ced8367b8c7a0ae5dcdc9d4b3db8570715979673034ab4506f04a5ade42d49",581 "language": "Rust",582 "lines": 956,583 "truncated": false,584 "block": 2,585 "row": 2471586 },587 {588 "path": "modkit-core/src/pileup/bedrmod.rs",589 "sha256": "75b6557db990b1ef21a695d1b199da994ea11d39ab5856b279225bf97a050e18",590 "language": "Rust",591 "lines": 240,592 "truncated": false,593 "block": 2,594 "row": 2434595 },596 {597 "path": "modkit-core/src/pileup/duplex.rs",598 "sha256": "77637c05d34662bda2bdfeedf7cb43b9c88f370acf1eff7068d470471ab2903e",599 "language": "Rust",600 "lines": 344,601 "truncated": false,602 "block": 2,603 "row": 2436604 },605 {606 "path": "modkit-core/src/pileup/mod.rs",607 "sha256": "74fcc8fe5ce4a3863b71a26948551af9ea310a9c706f7023adf1cb774c77d9c3",608 "language": "Rust",609 "lines": 204,610 "truncated": false,611 "block": 2,612 "row": 2418613 },614 {615 "path": "modkit-core/src/pileup/pileup_processor.rs",616 "sha256": "2e9fde9991373abe6edbe143f0daae292c5636faa66eddf970792f725fd4b7c3",617 "language": "Rust",618 "lines": 2509,619 "truncated": false,620 "block": 2,621 "row": 2484622 },623 {624 "path": "modkit-core/src/pileup/subcommand.rs",625 "sha256": "ed28075b62c58c1e26be4f1a5dd6e9dfd816d9836e7142e606c8404d324d04ac",626 "language": "Rust",627 "lines": 2377,628 "truncated": false,629 "block": 2,630 "row": 2485631 },632 {633 "path": "modkit-core/src/position_filter.rs",634 "sha256": "e643d1c3e5de138029b50e0228908294fcaacc19b799f3ccda9acf736e93f6c7",635 "language": "Rust",636 "lines": 374,637 "truncated": false,638 "block": 2,639 "row": 2446640 },641 {642 "path": "modkit-core/src/read_cache.rs",643 "sha256": "8bddee4bd2fbaf34060afef43b055281d511c06443ace1016c04605672803a9a",644 "language": "Rust",645 "lines": 539,646 "truncated": false,647 "block": 2,648 "row": 2462649 },650 {651 "path": "modkit-core/src/read_ids_to_base_mod_probs.rs",652 "sha256": "baf4424ddb418b470e2b23a8c635c9fb554762feaa3c98c266dfb085462fa87c",653 "language": "Rust",654 "lines": 1375,655 "truncated": false,656 "block": 2,657 "row": 2478658 },659 {660 "path": "modkit-core/src/reads_sampler/mod.rs",661 "sha256": "4137f15375a1644590fd68c58754414bf2c6d7721c659ca78c0e1a1d8e5cc4f2",662 "language": "Rust",663 "lines": 391,664 "truncated": false,665 "block": 2,666 "row": 2445667 },668 {669 "path": "modkit-core/src/reads_sampler/record_sampler.rs",670 "sha256": "55630ac4e62fd98543f4e885e7ba3353af8b94e5ee49323604bc1f798ffab749",671 "language": "Rust",672 "lines": 107,673 "truncated": false,674 "block": 2,675 "row": 2408676 },677 {678 "path": "modkit-core/src/reads_sampler/sampling_schedule.rs",679 "sha256": "9e43b1bfa8be7d60828700d522d867d5c8cd760d19c46c3b44a690b4630307ab",680 "language": "Rust",681 "lines": 1072,682 "truncated": false,683 "block": 2,684 "row": 2472685 },686 {687 "path": "modkit-core/src/record_processor.rs",688 "sha256": "e067dee80d4808d758c006ab125690f6bb6bb3d3931a911efa75dda78d0570d8",689 "language": "Rust",690 "lines": 34,691 "truncated": false,692 "block": 2,693 "row": 2393694 },695 {696 "path": "modkit-core/src/repair_tags.rs",697 "sha256": "92687825cae109b4ecf63d911133aec237502da24d4c7f0c6d511d5042983f6e",698 "language": "Rust",699 "lines": 394,700 "truncated": false,701 "block": 2,702 "row": 2449703 },704 {705 "path": "modkit-core/src/sample_probs/mod.rs",706 "sha256": "877e157d9f39709eb71f3302a6990ebce951728f4eac40c34ead0e2dc69c7136",707 "language": "Rust",708 "lines": 1761,709 "truncated": false,710 "block": 2,711 "row": 2481712 },713 {714 "path": "modkit-core/src/stats/mod.rs",715 "sha256": "e3092d48db275bf894005e6b7967a00160cb841156e19709ab311dc44ad5c1ec",716 "language": "Rust",717 "lines": 101,718 "truncated": false,719 "block": 2,720 "row": 2409721 },722 {723 "path": "modkit-core/src/stats/subcommand.rs",724 "sha256": "53e61bcb61adf548d3c98365df41d7358698356d3e538a0cd0e66a763d536254",725 "language": "Rust",726 "lines": 218,727 "truncated": false,728 "block": 2,729 "row": 2431730 },731 {732 "path": "modkit-core/src/summarize.rs",733 "sha256": "1365cb7348ded81abc658e11d6270a95eb8f537f7ece1c0f28389765830d4163",734 "language": "Rust",735 "lines": 488,736 "truncated": false,737 "block": 2,738 "row": 2459739 },740 {741 "path": "modkit-core/src/tabix.rs",742 "sha256": "44c64b69d3441628ca858824f5b350b3e4a5cb486103ca6cfa8c10b228fb6988",743 "language": "Rust",744 "lines": 210,745 "truncated": false,746 "block": 2,747 "row": 2420748 },749 {750 "path": "modkit-core/src/threshold_mod_caller.rs",751 "sha256": "9bed36b3a72c42fb519d17521b3833d3da8f66cd5622da67c630e82d1eeb90b7",752 "language": "Rust",753 "lines": 482,754 "truncated": false,755 "block": 2,756 "row": 2460757 },758 {759 "path": "modkit-core/src/thresholds.rs",760 "sha256": "cdc8cf39c6b7192011314f620f1eb646d73785366136089736d2fbd8ab470ba3",761 "language": "Rust",762 "lines": 260,763 "truncated": false,764 "block": 2,765 "row": 2428766 },767 {768 "path": "modkit-core/src/util.rs",769 "sha256": "e047ade7ab773d065bdd744ba5222f66c12c3bf372bdbe513263ca7776644243",770 "language": "Rust",771 "lines": 1518,772 "truncated": false,773 "block": 2,774 "row": 2477775 },776 {777 "path": "modkit-core/src/validate/mod.rs",778 "sha256": "ca22079c214b61084a043fde846b83cd23cb71c6c4f931b8253278a2a2988c63",779 "language": "Rust",780 "lines": 1,781 "truncated": false,782 "block": 2,783 "row": 2382784 },785 {786 "path": "modkit-core/src/validate/subcommand.rs",787 "sha256": "faeca1505239b134ec1422a47f2054b655e0f448cc9d296ce575d8abaef3fa98",788 "language": "Rust",789 "lines": 1134,790 "truncated": false,791 "block": 2,792 "row": 2473793 },794 {795 "path": "modkit-core/src/writers.rs",796 "sha256": "f6d529a063299cffacd290b29a4cab5fdf2785b692cbc1d3be7d8f17da9c6df9",797 "language": "Rust",798 "lines": 1475,799 "truncated": false,800 "block": 2,801 "row": 2479802 },803 {804 "path": "modkit-logging/src/lib.rs",805 "sha256": "2954eb0094418d1752c61796bce6d360ef11b5bff01ee96e5e39bbdc7ec4c749",806 "language": "Rust",807 "lines": 111,808 "truncated": false,809 "block": 2,810 "row": 2412811 },812 {813 "path": "modkit/src/commands.rs",814 "sha256": "9627d40b7daddc42588008d6aa37e2ff9b100fab85e1b8978ecdfecc1315da36",815 "language": "Rust",816 "lines": 148,817 "truncated": false,818 "block": 2,819 "row": 2421820 },821 {822 "path": "modkit/src/main.rs",823 "sha256": "ceff051909a919dc9c7b2a1d5349d392cafd647b66983150565a50adec81bb3f",824 "language": "Rust",825 "lines": 32,826 "truncated": false,827 "block": 2,828 "row": 2392829 },830 {831 "path": "modkit/tests/common/mod.rs",832 "sha256": "a3031da9134a88d448feb88214097ad863196809c96eef29e346582e3f5e5e99",833 "language": "Rust",834 "lines": 246,835 "truncated": false,836 "block": 2,837 "row": 2424838 },839 {840 "path": "modkit/tests/test_adjust_mods.rs",841 "sha256": "3ef38fefb5b364a95f4fcc6b79e43aeb40251ca072d07f95fc05658cbb12ec3b",842 "language": "Rust",843 "lines": 483,844 "truncated": false,845 "block": 2,846 "row": 2452847 },848 {849 "path": "modkit/tests/test_bedmethyl_util.rs",850 "sha256": "8129a91bc4ac7502c62591f25d01a6fec160b14530ef2155484fb624aa9df3f2",851 "language": "Rust",852 "lines": 198,853 "truncated": false,854 "block": 2,855 "row": 2419856 },857 {858 "path": "modkit/tests/test_call_mods.rs",859 "sha256": "5507920006590a352567b064a08726c9b437cc4f3b0bd335214f807027f4b536",860 "language": "Rust",861 "lines": 326,862 "truncated": false,863 "block": 2,864 "row": 2437865 },866 {867 "path": "modkit/tests/test_dmr.rs",868 "sha256": "2284f192dcb2c6ca65fb3e41b3e93a5e2b801e7d792514050e4c42d23abd56fd",869 "language": "Rust",870 "lines": 80,871 "truncated": false,872 "block": 2,873 "row": 2404874 },875 {876 "path": "modkit/tests/test_entropy.rs",877 "sha256": "8150274ba2a704d4998d7d1353ae062af41b371e3b8d7fe353473dce4eeecfe2",878 "language": "Rust",879 "lines": 41,880 "truncated": false,881 "block": 2,882 "row": 2397883 },884 {885 "path": "modkit/tests/test_extract.rs",886 "sha256": "1e25a3660aef58adaa372163117471978ae02253da91b48df136bec9b2ce2a3b",887 "language": "Rust",888 "lines": 614,889 "truncated": false,890 "block": 2,891 "row": 2458892 },893 {894 "path": "modkit/tests/test_find_motifs.rs",895 "sha256": "73c39a6debe3a7b5b6b13c41ea98a78917983a832f7c7f8015ac2e45378ff1b1",896 "language": "Rust",897 "lines": 13,898 "truncated": false,899 "block": 2,900 "row": 2390901 },902 {903 "path": "modkit/tests/test_localize.rs",904 "sha256": "810f1a6b165ef585d2f617b6467e563b05ed8ed12fdba5c35c25ec1f643cf0d1",905 "language": "Rust",906 "lines": 11,907 "truncated": false,908 "block": 2,909 "row": 2388910 },911 {912 "path": "modkit/tests/test_modbam_utils.rs",913 "sha256": "c1a558e98b300e01f74a74171ef11bd07c8f534e31d5cc58c2f2f750cbc2fb07",914 "language": "Rust",915 "lines": 39,916 "truncated": false,917 "block": 2,918 "row": 2396919 },920 {921 "path": "modkit/tests/test_open_chromatin.rs",922 "sha256": "7c967ac2a77b0a5eb18c5d93b7303d4f1938095398edfd362c2820882fb1e792",923 "language": "Rust",924 "lines": 79,925 "truncated": false,926 "block": 2,927 "row": 2405928 },929 {930 "path": "modkit/tests/test_pileup.rs",931 "sha256": "fe3673442ba0d90e6976b360d5df68ef0822800bc80734687f462b089e4531e3",932 "language": "Rust",933 "lines": 1018,934 "truncated": false,935 "block": 2,936 "row": 2469937 },938 {939 "path": "modkit/tests/test_pileup_hemi.rs",940 "sha256": "5eb5f4aa9402ca3187ad48fbafe70a14d3feba70b722813b1551a768fc18e359",941 "language": "Rust",942 "lines": 62,943 "truncated": false,944 "block": 2,945 "row": 2399946 },947 {948 "path": "modkit/tests/test_repair.rs",949 "sha256": "49cc802ac8cd7a26a7345ee1e0e483e0f7a442ab234eb9d93f488107a7f8b2ae",950 "language": "Rust",951 "lines": 89,952 "truncated": false,953 "block": 2,954 "row": 2406955 },956 {957 "path": "modkit/tests/test_shell_completions.rs",958 "sha256": "305d5916b4294438a5dc9f07839b2844110407fe11effbd7af837937585e7674",959 "language": "Rust",960 "lines": 18,961 "truncated": false,962 "block": 2,963 "row": 2389964 },965 {966 "path": "modkit/tests/test_summary.rs",967 "sha256": "df7910af836c4bfe5d30be56207a9832885313f31466a27700f656cf766714a1",968 "language": "Rust",969 "lines": 171,970 "truncated": false,971 "block": 2,972 "row": 2417973 },974 {975 "path": "modkit/tests/test_update_tags.rs",976 "sha256": "6a56098ff0b1753eaf86358d5b364da84810b777a9e3b976b00ed5a77e2518e1",977 "language": "Rust",978 "lines": 36,979 "truncated": false,980 "block": 2,981 "row": 2395982 },983 {984 "path": "modkit/tests/test_validate.rs",985 "sha256": "9617ed0302db891dcfbb81c344bf2d1ae412110d89d5683271eab0069114f6fc",986 "language": "Rust",987 "lines": 54,988 "truncated": false,989 "block": 2,990 "row": 2401991 },992 {993 "path": "ochm/src/batcher.rs",994 "sha256": "6a6c5e185ab0109e7e9d5418422ba51a9924273300d8bfdfca7e36c92e44c442",995 "language": "Rust",996 "lines": 40,997 "truncated": false,998 "block": 2,999 "row": 23941000 },1001 {1002 "path": "ochm/src/feature_loader.rs",1003 "sha256": "aed17fc10a782cdb89701991c1dcd8e330bd265fc2823ffe664b5e26b376b46a",1004 "language": "Rust",1005 "lines": 132,1006 "truncated": false,1007 "block": 2,1008 "row": 24161009 },1010 {1011 "path": "ochm/src/features.rs",1012 "sha256": "48a41ddc8722f807d25391b596a90b0cd4e7f3591b4d177b0dacf9935e8dcf22",1013 "language": "Rust",1014 "lines": 681,1015 "truncated": false,1016 "block": 2,1017 "row": 24641018 },1019 {1020 "path": "ochm/src/lib.rs",1021 "sha256": "2427f80b31eb4271c5fff6721e90db35a1b96c7117210901c2997456bbd0df95",1022 "language": "Rust",1023 "lines": 8,1024 "truncated": false,1025 "block": 2,1026 "row": 23861027 },1028 {1029 "path": "ochm/src/models.rs",1030 "sha256": "874016e3b96ed5199e7f2eb95006c11c103acbfddb3d77d65ff265233d450782",1031 "language": "Rust",1032 "lines": 132,1033 "truncated": false,1034 "block": 2,1035 "row": 24131036 },1037 {1038 "path": "ochm/src/prob_merger.rs",1039 "sha256": "c3870f35ccb9272f17fbe67dd4c84cb351c88e1fde6445e07b89a1af58b3db4e",1040 "language": "Rust",1041 "lines": 192,1042 "truncated": false,1043 "block": 2,1044 "row": 24221045 },1046 {1047 "path": "ochm/src/range_feeder.rs",1048 "sha256": "c9282e37285522b273b566c2cc2e008422c60061eacffa04a09be8ab31ac14dc",1049 "language": "Rust",1050 "lines": 243,1051 "truncated": false,1052 "block": 2,1053 "row": 24301054 },1055 {1056 "path": "ochm/src/subcommand.rs",1057 "sha256": "1ec81c1712381683388ed9fe04ad4ef7973ecf2a4d112f17b6c4b1c3e6840d6e",1058 "language": "Rust",1059 "lines": 429,1060 "truncated": false,1061 "block": 2,1062 "row": 24571063 },1064 {1065 "path": "ochm/src/util.rs",1066 "sha256": "494333f82076af740a410b529f0d18ef91d23732f34db5c10b68a90fa404cc31",1067 "language": "Rust",1068 "lines": 60,1069 "truncated": false,1070 "block": 2,1071 "row": 24021072 },1073 {1074 "path": "safe-record/src/lib.rs",1075 "sha256": "a8fc40f7eda5e772336a0d740262348e30fca4c1f6988592945f7b80bfb0be58",1076 "language": "Rust",1077 "lines": 122,1078 "truncated": false,1079 "block": 2,1080 "row": 24111081 },1082 {1083 "path": "tests/add_implicit_col.py",1084 "sha256": "b4ab527b200ae85b2a0903c7f588b2406c02d5690b6d503c1b6fdfdf5fb4f202",1085 "language": "Python",1086 "lines": 28,1087 "truncated": false,1088 "block": 2,1089 "row": 16871090 },1091 {1092 "path": "tests/add_mn_tags_to_repair_records.py",1093 "sha256": "3722419242ce2402803da9169ce9c4254e577318c99fc149baf8eb6680c249aa",1094 "language": "Python",1095 "lines": 33,1096 "truncated": false,1097 "block": 2,1098 "row": 17151099 },1100 {1101 "path": "tests/check_extracts.sh",1102 "sha256": "50c60f0b0e827f611e4780adfe3a803a942f59cca4e710dbe7e333ca348455ec",1103 "language": "Shell",1104 "lines": 39,1105 "truncated": false,1106 "block": 2,1107 "row": 25101108 },1109 {1110 "path": "tests/check_extracts_flag.sh",1111 "sha256": "603b1edc5f96bd3318996ba037fc209f9c8087ac0234c7b650d6043d55546f99",1112 "language": "Shell",1113 "lines": 84,1114 "truncated": false,1115 "block": 2,1116 "row": 25621117 },1118 {1119 "path": "tests/common/mod.rs",1120 "sha256": "ed58961d7434be2e18624e7f40196e946a01b2e1c962381b7ea3c94f95e42eee",1121 "language": "Rust",1122 "lines": 245,1123 "truncated": false,1124 "block": 2,1125 "row": 24231126 },1127 {1128 "path": "tests/make_crams.sh",1129 "sha256": "a07fecd22305cee04b11d4a533b0aa327c3f9cfa892338fbd184f3b5e2c23292",1130 "language": "Shell",1131 "lines": 10,1132 "truncated": false,1133 "block": 2,1134 "row": 25001135 },1136 {1137 "path": "tests/make_trimmed_reads.sh",1138 "sha256": "017e4372366d12323ba5a770144e4fd9534eb5c978066128d3250b4dd3c35dd1",1139 "language": "Shell",1140 "lines": 21,1141 "truncated": false,1142 "block": 2,1143 "row": 25031144 },1145 {1146 "path": "tests/regress_tags.sh",1147 "sha256": "fd5d9141b50eb68d30b5c34727a145ff0ef6c143557cabf18f56fcd16d6d6c6e",1148 "language": "Shell",1149 "lines": 9,1150 "truncated": false,1151 "block": 2,1152 "row": 24971153 },1154 {1155 "path": "tests/trim_reads.py",1156 "sha256": "8146e60d1e8e291174e2183cc84c786145ccc78033ac7941a825138fa9d0b499",1157 "language": "Python",1158 "lines": 28,1159 "truncated": false,1160 "block": 2,1161 "row": 16991162 },1163 {1164 "path": "tests/update_extract_test_data.sh",1165 "sha256": "908bde08bb19ce3993261c2dbdb60adcc941ad9bcd8558f53136e2ce595b84c3",1166 "language": "Shell",1167 "lines": 69,1168 "truncated": false,1169 "block": 2,1170 "row": 25421171 }1172 ]1173}