Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__nanoporetech__modkit.json1173 linesDownload Raw Back to f5
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/nanoporetech/modkit",4 "url": "https://github.com/nanoporetech/modkit",5 "host": "github.com",6 "commit": "5cecc3fb3a9336068d9e3c68d5c08d678153dd2c",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENCE.txt",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENCE.txt",13   "sha256": "39cc712a23eead54302ce722e2d0cb6eb73d94ad42f407e7153829a4d5154884",14   "language": "License",15   "lines": 323,16   "truncated": false,17   "block": 2,18   "row": 115119  },20  {21   "path": "README.md",22   "sha256": "302d923bf856296f82ddeaac95060ddbab8fb384a75d772bc9028cf7604cbaf7",23   "language": "Text",24   "lines": 186,25   "truncated": false,26   "block": 2,27   "row": 265028  },29  {30   "path": "docs/book-a0b12cfe.js",31   "sha256": "a0b12cfedf44851aa23bbfd6c39a0df8f9c34fdb919d6d22913dcd2041d0b2fa",32   "language": "JavaScript",33   "lines": 843,34   "truncated": false,35   "block": 2,36   "row": 91837  },38  {39   "path": "docs/clipboard-1626706a.min.js",40   "sha256": "1626706afc88d95ebe1173b553ec732c6dc82a576989315fdf5e7779af738a44",41   "language": "JavaScript",42   "lines": 7,43   "truncated": false,44   "block": 2,45   "row": 91046  },47  {48   "path": "docs/elasticlunr-ef4e11c1.min.js",49   "sha256": "ef4e11c157b1e2e89782d30bd726f2d5ff7834ea5e26ad02474325f8b1f126c9",50   "language": "JavaScript",51   "lines": 10,52   "truncated": false,53   "block": 2,54   "row": 91455  },56  {57   "path": "docs/highlight-abc7f01d.js",58   "sha256": "abc7f01d0ce8c64e4ba9e131d651e48ae1a567b2a1254fea8aab03502288de58",59   "language": "JavaScript",60   "lines": 54,61   "truncated": false,62   "block": 2,63   "row": 92064  },65  {66   "path": "docs/mark-09e88c2c.min.js",67   "sha256": "09e88c2cfaf23ea8a37b5681433eafea97033af632ecc948c8c1ee9944647743",68   "language": "JavaScript",69   "lines": 7,70   "truncated": false,71   "block": 2,72   "row": 91273  },74  {75   "path": "docs/searcher-c2a407aa.js",76   "sha256": "401dd78f5dc740ba987ae9aaffa86c9f0c5b9889b1fed7adf30d5078665fe2a4",77   "language": "JavaScript",78   "lines": 555,79   "truncated": false,80   "block": 2,81   "row": 91682  },83  {84   "path": "docs/searchindex-b348220b.js",85   "sha256": "bba7c79255c5264c820f6252e8f6f6dcda8174a5ef76144d78f3181dd78c66bf",86   "language": "JavaScript",87   "lines": 1,88   "truncated": true,89   "block": 2,90   "row": 92191  },92  {93   "path": "docs/toc-869b6773.js",94   "sha256": "869b677373e8bc3c392c965baa5ee51b5863d391c3cba6bfc93a284726945deb",95   "language": "JavaScript",96   "lines": 446,97   "truncated": false,98   "block": 2,99   "row": 917100  },101  {102   "path": "generate_advanced_usage.sh",103   "sha256": "074ca9741ad17edd33087db014a33c0b8e9bad7da440fa7cec01f0eb54c056e6",104   "language": "Shell",105   "lines": 92,106   "truncated": false,107   "block": 2,108   "row": 2551109  },110  {111   "path": "mac_compile_modkit.sh",112   "sha256": "c65fdbc16d8488af61cef003da400bf5ad2e0eeb11bcb68fb0ebc806a0fdc2e9",113   "language": "Shell",114   "lines": 1168,115   "truncated": false,116   "block": 2,117   "row": 2579118  },119  {120   "path": "modkit-core/src/adjust.rs",121   "sha256": "a048324c08f9a9ff4cefca527aa41c3fa3f8f65fb988b5193caf2522af512935",122   "language": "Rust",123   "lines": 438,124   "truncated": false,125   "block": 2,126   "row": 2451127  },128  {129   "path": "modkit-core/src/bedmethyl_util/mod.rs",130   "sha256": "efe0fbafbad412b3a73182885f18c9556e545c4222ceec7843d392e9b0735d37",131   "language": "Rust",132   "lines": 221,133   "truncated": false,134   "block": 2,135   "row": 2425136  },137  {138   "path": "modkit-core/src/bedmethyl_util/subcommands.rs",139   "sha256": "b71feaaa537284e6b582b8384f5ecc30c67827f6679b8d2d8d63fbbc4d0aae25",140   "language": "Rust",141   "lines": 794,142   "truncated": false,143   "block": 2,144   "row": 2467145  },146  {147   "path": "modkit-core/src/command_utils.rs",148   "sha256": "bbf7d1576f769040c2cdfc78709f0251600d1afff75649122245d532a451d32d",149   "language": "Rust",150   "lines": 456,151   "truncated": false,152   "block": 2,153   "row": 2454154  },155  {156   "path": "modkit-core/src/dmr/bedmethyl.rs",157   "sha256": "923445b42d518bc7f9529d6ccc2fce25856405f1b859e2713755a67c404a5ec3",158   "language": "Rust",159   "lines": 453,160   "truncated": false,161   "block": 2,162   "row": 2456163  },164  {165   "path": "modkit-core/src/dmr/beta_diff.rs",166   "sha256": "044d3982ef12bc03a3b4e4dca1a71d8d4589085cca774867db0f1494b47a085f",167   "language": "Rust",168   "lines": 332,169   "truncated": false,170   "block": 2,171   "row": 2435172  },173  {174   "path": "modkit-core/src/dmr/isoform/gtf_reader.rs",175   "sha256": "b8923ddfea3db3ed28fc5158405a51a95fd70653798dcd470c3ca178ad3c8bd9",176   "language": "Rust",177   "lines": 93,178   "truncated": false,179   "block": 2,180   "row": 2407181  },182  {183   "path": "modkit-core/src/dmr/isoform/mod.rs",184   "sha256": "8d1d938d22ac862cfbc250d1d9ff4ba30b3d99824e5d5d80d533a215e01d465c",185   "language": "Rust",186   "lines": 2597,187   "truncated": false,188   "block": 2,189   "row": 2483190  },191  {192   "path": "modkit-core/src/dmr/isoform/pair.rs",193   "sha256": "34f10b7c38794721ec5fcb7e4b02ad63d631c58a2d5a15ae7d340c8c42b8d392",194   "language": "Rust",195   "lines": 358,196   "truncated": false,197   "block": 2,198   "row": 2442199  },200  {201   "path": "modkit-core/src/dmr/isoform/scoring.rs",202   "sha256": "a22396ec743b03746eaacab9f1b987ad8159105d71aa57b2c83db9ba1ac1c820",203   "language": "Rust",204   "lines": 181,205   "truncated": false,206   "block": 2,207   "row": 2415208  },209  {210   "path": "modkit-core/src/dmr/isoform/vis.rs",211   "sha256": "62cc7c2129fbcc27b38907291438917a2239c6e8a88cd37ea0d7617ced47b963",212   "language": "Rust",213   "lines": 265,214   "truncated": false,215   "block": 2,216   "row": 2426217  },218  {219   "path": "modkit-core/src/dmr/llr_model.rs",220   "sha256": "842b2967e0c12e46037e8c26b19eec4afcf33784c8b07d25d4fef38b675c481e",221   "language": "Rust",222   "lines": 437,223   "truncated": false,224   "block": 2,225   "row": 2447226  },227  {228   "path": "modkit-core/src/dmr/mod.rs",229   "sha256": "726a14a8914b74de20b0d2262b66a86daab7e2396eeadbec46e0c94939816287",230   "language": "Rust",231   "lines": 9,232   "truncated": false,233   "block": 2,234   "row": 2387235  },236  {237   "path": "modkit-core/src/dmr/pairwise.rs",238   "sha256": "3b899aa0d44febf06c0f58620434b82e17ab8490183cd8fcc46115e7b991816b",239   "language": "Rust",240   "lines": 310,241   "truncated": false,242   "block": 2,243   "row": 2440244  },245  {246   "path": "modkit-core/src/dmr/single_site.rs",247   "sha256": "cd378f152382a18351aab6df344bdf9057fbdf373476226e4b9c6830370d9923",248   "language": "Rust",249   "lines": 1347,250   "truncated": false,251   "block": 2,252   "row": 2476253  },254  {255   "path": "modkit-core/src/dmr/subcommands.rs",256   "sha256": "42c78e5c3cdee5a231660e5ea652e928443c10db7e70819161edd3a829c9af94",257   "language": "Rust",258   "lines": 1940,259   "truncated": false,260   "block": 2,261   "row": 2482262  },263  {264   "path": "modkit-core/src/dmr/tabix.rs",265   "sha256": "70e9cdc042f795dccb42ab4ccdeda610e07d96d522347dfcd5cf04e582073eb5",266   "language": "Rust",267   "lines": 374,268   "truncated": false,269   "block": 2,270   "row": 2448271  },272  {273   "path": "modkit-core/src/dmr/util.rs",274   "sha256": "e76e517a78a42da2ffbb5387cf3518196e1e09711c54a264b257d59f00aee9f8",275   "language": "Rust",276   "lines": 646,277   "truncated": false,278   "block": 2,279   "row": 2461280  },281  {282   "path": "modkit-core/src/entropy/methylation_entropy.rs",283   "sha256": "2a43d6dc4c0305d9be691e440a12b97bb78774ae9e589ef20be3abda7e56d7b6",284   "language": "Rust",285   "lines": 358,286   "truncated": false,287   "block": 2,288   "row": 2439289  },290  {291   "path": "modkit-core/src/entropy/mod.rs",292   "sha256": "4af3f4b65ddba7555e1e4c8f4a65e68753c2e98351908c37ebfb7c502a84a2fd",293   "language": "Rust",294   "lines": 1695,295   "truncated": false,296   "block": 2,297   "row": 2480298  },299  {300   "path": "modkit-core/src/entropy/subcommand.rs",301   "sha256": "a9ff613293034fac34971a9294ad1f0e80ccc95cf7d98f15680d6729c9cd27e4",302   "language": "Rust",303   "lines": 518,304   "truncated": false,305   "block": 2,306   "row": 2463307  },308  {309   "path": "modkit-core/src/entropy/writers.rs",310   "sha256": "102700b5030bd0602a7994eb858ca947b6c5fb48298bd0f2447f397bec1607a5",311   "language": "Rust",312   "lines": 349,313   "truncated": false,314   "block": 2,315   "row": 2441316  },317  {318   "path": "modkit-core/src/errs.rs",319   "sha256": "f5d6526e7e9fc7228b159261fe032dabe4c6e0fc58e24d782ea86d1763132cf9",320   "language": "Rust",321   "lines": 115,322   "truncated": false,323   "block": 2,324   "row": 2410325  },326  {327   "path": "modkit-core/src/extract/args.rs",328   "sha256": "910e25cc2f19c2444a99fe0c55a2520b77976ad94ab9baefe1f3aacc8b68e603",329   "language": "Rust",330   "lines": 181,331   "truncated": false,332   "block": 2,333   "row": 2433334  },335  {336   "path": "modkit-core/src/extract/mod.rs",337   "sha256": "ccc303cfdfa1185394e942ec8fb389359cdcce1df8c56715d20f0b9353e057de",338   "language": "Rust",339   "lines": 4,340   "truncated": false,341   "block": 2,342   "row": 2385343  },344  {345   "path": "modkit-core/src/extract/subcommand.rs",346   "sha256": "8b1e1449d605fa76da6bc40dfaa2b974b9abf7cc9590d35783383cff411daa45",347   "language": "Rust",348   "lines": 1196,349   "truncated": false,350   "block": 2,351   "row": 2475352  },353  {354   "path": "modkit-core/src/extract/util.rs",355   "sha256": "73958a357e204ffaa7245ca3685f20238e6d4f4be5fcbaa30a711e68b7056583",356   "language": "Rust",357   "lines": 868,358   "truncated": false,359   "block": 2,360   "row": 2470361  },362  {363   "path": "modkit-core/src/extract/writer.rs",364   "sha256": "95939f8d2a2dd62a4bcb20afd55914f4d3f8a594ac8aa462da97794505dd115c",365   "language": "Rust",366   "lines": 452,367   "truncated": false,368   "block": 2,369   "row": 2453370  },371  {372   "path": "modkit-core/src/fasta.rs",373   "sha256": "f8b17f9da2ab45dbbc6a3268cd0712afc61747686146c9962a18c0e5e538b12e",374   "language": "Rust",375   "lines": 368,376   "truncated": false,377   "block": 2,378   "row": 2443379  },380  {381   "path": "modkit-core/src/filter_thresholds.rs",382   "sha256": "d2fee81956726150a36b8635efd6c4254773249387fcd7aa5a872a73e86313de",383   "language": "Rust",384   "lines": 23,385   "truncated": false,386   "block": 2,387   "row": 2391388  },389  {390   "path": "modkit-core/src/genome_positions.rs",391   "sha256": "8791c0f0ad1044515b5a746ba6fb5721c8caf12e4d86dc878219b12ac0ee230f",392   "language": "Rust",393   "lines": 132,394   "truncated": false,395   "block": 2,396   "row": 2414397  },398  {399   "path": "modkit-core/src/hmm.rs",400   "sha256": "ec3b9a97eb348603c19290c937db91bae959c56058b5a87810cf54ede0be4081",401   "language": "Rust",402   "lines": 424,403   "truncated": false,404   "block": 2,405   "row": 2444406  },407  {408   "path": "modkit-core/src/interval_chunks.rs",409   "sha256": "836ca61678ee3f3b582251d13477decd5e6c131000a9a8c79f7ecb5fe15f59dc",410   "language": "Rust",411   "lines": 700,412   "truncated": false,413   "block": 2,414   "row": 2465415  },416  {417   "path": "modkit-core/src/lib.rs",418   "sha256": "e3c6481d656fd11c6763a192bdd27e6ce0ab7ba02cac4c9c8a4bdf4e92daf8b0",419   "language": "Rust",420   "lines": 62,421   "truncated": false,422   "block": 2,423   "row": 2398424  },425  {426   "path": "modkit-core/src/localise/mod.rs",427   "sha256": "8708d91d46a87513f6fbed6ca1052ac516747d6fff38dac152836ab591787a0a",428   "language": "Rust",429   "lines": 2,430   "truncated": false,431   "block": 2,432   "row": 2383433  },434  {435   "path": "modkit-core/src/localise/subcommand.rs",436   "sha256": "837e7cd0ae9044b20a4aaf70bd41287dc2a48e70449d20ada1445b15a1428133",437   "language": "Rust",438   "lines": 310,439   "truncated": false,440   "block": 2,441   "row": 2438442  },443  {444   "path": "modkit-core/src/localise/util.rs",445   "sha256": "142a10d7a4d6a947319ae3b90602d950ddb81c28afa4b03b2647bf3a152f78d1",446   "language": "Rust",447   "lines": 235,448   "truncated": false,449   "block": 2,450   "row": 2429451  },452  {453   "path": "modkit-core/src/logging.rs",454   "sha256": "2954eb0094418d1752c61796bce6d360ef11b5bff01ee96e5e39bbdc7ec4c749",455   "language": "Rust",456   "lines": 111,457   "truncated": false,458   "block": 2,459   "row": 2412460  },461  {462   "path": "modkit-core/src/mod_bam.rs",463   "sha256": "6a7a7f91ef9531bb7120b8ecd8adc95189927f3dbae5ccf995772e8fa137de0a",464   "language": "Rust",465   "lines": 2919,466   "truncated": false,467   "block": 2,468   "row": 2487469  },470  {471   "path": "modkit-core/src/mod_base_code.rs",472   "sha256": "38eaccb0dbca1d7587b2a9c654dde8d4ee24a0c952aa67a75f8bdbe7ff1a0eb9",473   "language": "Rust",474   "lines": 459,475   "truncated": false,476   "block": 2,477   "row": 2450478  },479  {480   "path": "modkit-core/src/modbam_util/check_tags.rs",481   "sha256": "6868192348b8417800c9083720d39c1be966747048ec99a585b11359d8ae5628",482   "language": "Rust",483   "lines": 466,484   "truncated": false,485   "block": 2,486   "row": 2455487  },488  {489   "path": "modkit-core/src/modbam_util/mod.rs",490   "sha256": "62496f4d6ec12ad9476159a305df07cadc0c1008298ee60c011cf5109782b22f",491   "language": "Rust",492   "lines": 2,493   "truncated": false,494   "block": 2,495   "row": 2384496  },497  {498   "path": "modkit-core/src/modbam_util/subcommands.rs",499   "sha256": "bb63958f35b468ac36c829c27fbe10cc53d09226095670f174d3370b73affe9f",500   "language": "Rust",501   "lines": 2475,502   "truncated": false,503   "block": 2,504   "row": 2486505  },506  {507   "path": "modkit-core/src/monoid.rs",508   "sha256": "96bacfd26dae5dcae40f0b64ba13769fc0c28275ba379d72b29805cc92d95ba4",509   "language": "Rust",510   "lines": 374,511   "truncated": false,512   "block": 2,513   "row": 2432514  },515  {516   "path": "modkit-core/src/motifs/args.rs",517   "sha256": "146593acc6c5784c93d153f11ec2e9d082e7a42879b8b825b964a6a9d3c3df8f",518   "language": "Rust",519   "lines": 172,520   "truncated": false,521   "block": 2,522   "row": 2427523  },524  {525   "path": "modkit-core/src/motifs/iupac.rs",526   "sha256": "2722985e5f3c78dacba438c2dd883249f46c078c7581d78848f1ce7511c8a726",527   "language": "Rust",528   "lines": 892,529   "truncated": false,530   "block": 2,531   "row": 2468532  },533  {534   "path": "modkit-core/src/motifs/mod.rs",535   "sha256": "985bd0f03a4e88e1f554836fa67828e04137a73fd4279c5d173b96a9dc4b4f65",536   "language": "Rust",537   "lines": 3651,538   "truncated": false,539   "block": 2,540   "row": 2488541  },542  {543   "path": "modkit-core/src/motifs/motif_bed.rs",544   "sha256": "b1d380c4177d2e8e947ff0272af563ef803b050f754ee7db5ff18f9aa8cdf8d1",545   "language": "Rust",546   "lines": 808,547   "truncated": false,548   "block": 2,549   "row": 2466550  },551  {552   "path": "modkit-core/src/motifs/subcommand.rs",553   "sha256": "f4b2c64d4516d44afe932ad306354f88ae22b5cf0ea4d1eb0075d6c3ebd142cb",554   "language": "Rust",555   "lines": 1131,556   "truncated": false,557   "block": 2,558   "row": 2474559  },560  {561   "path": "modkit-core/src/motifs/util.rs",562   "sha256": "5f0aacd7310af25e42a0ea4f2adda831bfc36fb978355b7479a9f141accf7bd2",563   "language": "Rust",564   "lines": 80,565   "truncated": false,566   "block": 2,567   "row": 2403568  },569  {570   "path": "modkit-core/src/parsing_utils.rs",571   "sha256": "de9e1194f07ba5a1294d0186a1774201c675e1ed0a0dbdde37f88615b1511602",572   "language": "Rust",573   "lines": 53,574   "truncated": false,575   "block": 2,576   "row": 2400577  },578  {579   "path": "modkit-core/src/pileup/base_mods_adapter.rs",580   "sha256": "63ced8367b8c7a0ae5dcdc9d4b3db8570715979673034ab4506f04a5ade42d49",581   "language": "Rust",582   "lines": 956,583   "truncated": false,584   "block": 2,585   "row": 2471586  },587  {588   "path": "modkit-core/src/pileup/bedrmod.rs",589   "sha256": "75b6557db990b1ef21a695d1b199da994ea11d39ab5856b279225bf97a050e18",590   "language": "Rust",591   "lines": 240,592   "truncated": false,593   "block": 2,594   "row": 2434595  },596  {597   "path": "modkit-core/src/pileup/duplex.rs",598   "sha256": "77637c05d34662bda2bdfeedf7cb43b9c88f370acf1eff7068d470471ab2903e",599   "language": "Rust",600   "lines": 344,601   "truncated": false,602   "block": 2,603   "row": 2436604  },605  {606   "path": "modkit-core/src/pileup/mod.rs",607   "sha256": "74fcc8fe5ce4a3863b71a26948551af9ea310a9c706f7023adf1cb774c77d9c3",608   "language": "Rust",609   "lines": 204,610   "truncated": false,611   "block": 2,612   "row": 2418613  },614  {615   "path": "modkit-core/src/pileup/pileup_processor.rs",616   "sha256": "2e9fde9991373abe6edbe143f0daae292c5636faa66eddf970792f725fd4b7c3",617   "language": "Rust",618   "lines": 2509,619   "truncated": false,620   "block": 2,621   "row": 2484622  },623  {624   "path": "modkit-core/src/pileup/subcommand.rs",625   "sha256": "ed28075b62c58c1e26be4f1a5dd6e9dfd816d9836e7142e606c8404d324d04ac",626   "language": "Rust",627   "lines": 2377,628   "truncated": false,629   "block": 2,630   "row": 2485631  },632  {633   "path": "modkit-core/src/position_filter.rs",634   "sha256": "e643d1c3e5de138029b50e0228908294fcaacc19b799f3ccda9acf736e93f6c7",635   "language": "Rust",636   "lines": 374,637   "truncated": false,638   "block": 2,639   "row": 2446640  },641  {642   "path": "modkit-core/src/read_cache.rs",643   "sha256": "8bddee4bd2fbaf34060afef43b055281d511c06443ace1016c04605672803a9a",644   "language": "Rust",645   "lines": 539,646   "truncated": false,647   "block": 2,648   "row": 2462649  },650  {651   "path": "modkit-core/src/read_ids_to_base_mod_probs.rs",652   "sha256": "baf4424ddb418b470e2b23a8c635c9fb554762feaa3c98c266dfb085462fa87c",653   "language": "Rust",654   "lines": 1375,655   "truncated": false,656   "block": 2,657   "row": 2478658  },659  {660   "path": "modkit-core/src/reads_sampler/mod.rs",661   "sha256": "4137f15375a1644590fd68c58754414bf2c6d7721c659ca78c0e1a1d8e5cc4f2",662   "language": "Rust",663   "lines": 391,664   "truncated": false,665   "block": 2,666   "row": 2445667  },668  {669   "path": "modkit-core/src/reads_sampler/record_sampler.rs",670   "sha256": "55630ac4e62fd98543f4e885e7ba3353af8b94e5ee49323604bc1f798ffab749",671   "language": "Rust",672   "lines": 107,673   "truncated": false,674   "block": 2,675   "row": 2408676  },677  {678   "path": "modkit-core/src/reads_sampler/sampling_schedule.rs",679   "sha256": "9e43b1bfa8be7d60828700d522d867d5c8cd760d19c46c3b44a690b4630307ab",680   "language": "Rust",681   "lines": 1072,682   "truncated": false,683   "block": 2,684   "row": 2472685  },686  {687   "path": "modkit-core/src/record_processor.rs",688   "sha256": "e067dee80d4808d758c006ab125690f6bb6bb3d3931a911efa75dda78d0570d8",689   "language": "Rust",690   "lines": 34,691   "truncated": false,692   "block": 2,693   "row": 2393694  },695  {696   "path": "modkit-core/src/repair_tags.rs",697   "sha256": "92687825cae109b4ecf63d911133aec237502da24d4c7f0c6d511d5042983f6e",698   "language": "Rust",699   "lines": 394,700   "truncated": false,701   "block": 2,702   "row": 2449703  },704  {705   "path": "modkit-core/src/sample_probs/mod.rs",706   "sha256": "877e157d9f39709eb71f3302a6990ebce951728f4eac40c34ead0e2dc69c7136",707   "language": "Rust",708   "lines": 1761,709   "truncated": false,710   "block": 2,711   "row": 2481712  },713  {714   "path": "modkit-core/src/stats/mod.rs",715   "sha256": "e3092d48db275bf894005e6b7967a00160cb841156e19709ab311dc44ad5c1ec",716   "language": "Rust",717   "lines": 101,718   "truncated": false,719   "block": 2,720   "row": 2409721  },722  {723   "path": "modkit-core/src/stats/subcommand.rs",724   "sha256": "53e61bcb61adf548d3c98365df41d7358698356d3e538a0cd0e66a763d536254",725   "language": "Rust",726   "lines": 218,727   "truncated": false,728   "block": 2,729   "row": 2431730  },731  {732   "path": "modkit-core/src/summarize.rs",733   "sha256": "1365cb7348ded81abc658e11d6270a95eb8f537f7ece1c0f28389765830d4163",734   "language": "Rust",735   "lines": 488,736   "truncated": false,737   "block": 2,738   "row": 2459739  },740  {741   "path": "modkit-core/src/tabix.rs",742   "sha256": "44c64b69d3441628ca858824f5b350b3e4a5cb486103ca6cfa8c10b228fb6988",743   "language": "Rust",744   "lines": 210,745   "truncated": false,746   "block": 2,747   "row": 2420748  },749  {750   "path": "modkit-core/src/threshold_mod_caller.rs",751   "sha256": "9bed36b3a72c42fb519d17521b3833d3da8f66cd5622da67c630e82d1eeb90b7",752   "language": "Rust",753   "lines": 482,754   "truncated": false,755   "block": 2,756   "row": 2460757  },758  {759   "path": "modkit-core/src/thresholds.rs",760   "sha256": "cdc8cf39c6b7192011314f620f1eb646d73785366136089736d2fbd8ab470ba3",761   "language": "Rust",762   "lines": 260,763   "truncated": false,764   "block": 2,765   "row": 2428766  },767  {768   "path": "modkit-core/src/util.rs",769   "sha256": "e047ade7ab773d065bdd744ba5222f66c12c3bf372bdbe513263ca7776644243",770   "language": "Rust",771   "lines": 1518,772   "truncated": false,773   "block": 2,774   "row": 2477775  },776  {777   "path": "modkit-core/src/validate/mod.rs",778   "sha256": "ca22079c214b61084a043fde846b83cd23cb71c6c4f931b8253278a2a2988c63",779   "language": "Rust",780   "lines": 1,781   "truncated": false,782   "block": 2,783   "row": 2382784  },785  {786   "path": "modkit-core/src/validate/subcommand.rs",787   "sha256": "faeca1505239b134ec1422a47f2054b655e0f448cc9d296ce575d8abaef3fa98",788   "language": "Rust",789   "lines": 1134,790   "truncated": false,791   "block": 2,792   "row": 2473793  },794  {795   "path": "modkit-core/src/writers.rs",796   "sha256": "f6d529a063299cffacd290b29a4cab5fdf2785b692cbc1d3be7d8f17da9c6df9",797   "language": "Rust",798   "lines": 1475,799   "truncated": false,800   "block": 2,801   "row": 2479802  },803  {804   "path": "modkit-logging/src/lib.rs",805   "sha256": "2954eb0094418d1752c61796bce6d360ef11b5bff01ee96e5e39bbdc7ec4c749",806   "language": "Rust",807   "lines": 111,808   "truncated": false,809   "block": 2,810   "row": 2412811  },812  {813   "path": "modkit/src/commands.rs",814   "sha256": "9627d40b7daddc42588008d6aa37e2ff9b100fab85e1b8978ecdfecc1315da36",815   "language": "Rust",816   "lines": 148,817   "truncated": false,818   "block": 2,819   "row": 2421820  },821  {822   "path": "modkit/src/main.rs",823   "sha256": "ceff051909a919dc9c7b2a1d5349d392cafd647b66983150565a50adec81bb3f",824   "language": "Rust",825   "lines": 32,826   "truncated": false,827   "block": 2,828   "row": 2392829  },830  {831   "path": "modkit/tests/common/mod.rs",832   "sha256": "a3031da9134a88d448feb88214097ad863196809c96eef29e346582e3f5e5e99",833   "language": "Rust",834   "lines": 246,835   "truncated": false,836   "block": 2,837   "row": 2424838  },839  {840   "path": "modkit/tests/test_adjust_mods.rs",841   "sha256": "3ef38fefb5b364a95f4fcc6b79e43aeb40251ca072d07f95fc05658cbb12ec3b",842   "language": "Rust",843   "lines": 483,844   "truncated": false,845   "block": 2,846   "row": 2452847  },848  {849   "path": "modkit/tests/test_bedmethyl_util.rs",850   "sha256": "8129a91bc4ac7502c62591f25d01a6fec160b14530ef2155484fb624aa9df3f2",851   "language": "Rust",852   "lines": 198,853   "truncated": false,854   "block": 2,855   "row": 2419856  },857  {858   "path": "modkit/tests/test_call_mods.rs",859   "sha256": "5507920006590a352567b064a08726c9b437cc4f3b0bd335214f807027f4b536",860   "language": "Rust",861   "lines": 326,862   "truncated": false,863   "block": 2,864   "row": 2437865  },866  {867   "path": "modkit/tests/test_dmr.rs",868   "sha256": "2284f192dcb2c6ca65fb3e41b3e93a5e2b801e7d792514050e4c42d23abd56fd",869   "language": "Rust",870   "lines": 80,871   "truncated": false,872   "block": 2,873   "row": 2404874  },875  {876   "path": "modkit/tests/test_entropy.rs",877   "sha256": "8150274ba2a704d4998d7d1353ae062af41b371e3b8d7fe353473dce4eeecfe2",878   "language": "Rust",879   "lines": 41,880   "truncated": false,881   "block": 2,882   "row": 2397883  },884  {885   "path": "modkit/tests/test_extract.rs",886   "sha256": "1e25a3660aef58adaa372163117471978ae02253da91b48df136bec9b2ce2a3b",887   "language": "Rust",888   "lines": 614,889   "truncated": false,890   "block": 2,891   "row": 2458892  },893  {894   "path": "modkit/tests/test_find_motifs.rs",895   "sha256": "73c39a6debe3a7b5b6b13c41ea98a78917983a832f7c7f8015ac2e45378ff1b1",896   "language": "Rust",897   "lines": 13,898   "truncated": false,899   "block": 2,900   "row": 2390901  },902  {903   "path": "modkit/tests/test_localize.rs",904   "sha256": "810f1a6b165ef585d2f617b6467e563b05ed8ed12fdba5c35c25ec1f643cf0d1",905   "language": "Rust",906   "lines": 11,907   "truncated": false,908   "block": 2,909   "row": 2388910  },911  {912   "path": "modkit/tests/test_modbam_utils.rs",913   "sha256": "c1a558e98b300e01f74a74171ef11bd07c8f534e31d5cc58c2f2f750cbc2fb07",914   "language": "Rust",915   "lines": 39,916   "truncated": false,917   "block": 2,918   "row": 2396919  },920  {921   "path": "modkit/tests/test_open_chromatin.rs",922   "sha256": "7c967ac2a77b0a5eb18c5d93b7303d4f1938095398edfd362c2820882fb1e792",923   "language": "Rust",924   "lines": 79,925   "truncated": false,926   "block": 2,927   "row": 2405928  },929  {930   "path": "modkit/tests/test_pileup.rs",931   "sha256": "fe3673442ba0d90e6976b360d5df68ef0822800bc80734687f462b089e4531e3",932   "language": "Rust",933   "lines": 1018,934   "truncated": false,935   "block": 2,936   "row": 2469937  },938  {939   "path": "modkit/tests/test_pileup_hemi.rs",940   "sha256": "5eb5f4aa9402ca3187ad48fbafe70a14d3feba70b722813b1551a768fc18e359",941   "language": "Rust",942   "lines": 62,943   "truncated": false,944   "block": 2,945   "row": 2399946  },947  {948   "path": "modkit/tests/test_repair.rs",949   "sha256": "49cc802ac8cd7a26a7345ee1e0e483e0f7a442ab234eb9d93f488107a7f8b2ae",950   "language": "Rust",951   "lines": 89,952   "truncated": false,953   "block": 2,954   "row": 2406955  },956  {957   "path": "modkit/tests/test_shell_completions.rs",958   "sha256": "305d5916b4294438a5dc9f07839b2844110407fe11effbd7af837937585e7674",959   "language": "Rust",960   "lines": 18,961   "truncated": false,962   "block": 2,963   "row": 2389964  },965  {966   "path": "modkit/tests/test_summary.rs",967   "sha256": "df7910af836c4bfe5d30be56207a9832885313f31466a27700f656cf766714a1",968   "language": "Rust",969   "lines": 171,970   "truncated": false,971   "block": 2,972   "row": 2417973  },974  {975   "path": "modkit/tests/test_update_tags.rs",976   "sha256": "6a56098ff0b1753eaf86358d5b364da84810b777a9e3b976b00ed5a77e2518e1",977   "language": "Rust",978   "lines": 36,979   "truncated": false,980   "block": 2,981   "row": 2395982  },983  {984   "path": "modkit/tests/test_validate.rs",985   "sha256": "9617ed0302db891dcfbb81c344bf2d1ae412110d89d5683271eab0069114f6fc",986   "language": "Rust",987   "lines": 54,988   "truncated": false,989   "block": 2,990   "row": 2401991  },992  {993   "path": "ochm/src/batcher.rs",994   "sha256": "6a6c5e185ab0109e7e9d5418422ba51a9924273300d8bfdfca7e36c92e44c442",995   "language": "Rust",996   "lines": 40,997   "truncated": false,998   "block": 2,999   "row": 23941000  },1001  {1002   "path": "ochm/src/feature_loader.rs",1003   "sha256": "aed17fc10a782cdb89701991c1dcd8e330bd265fc2823ffe664b5e26b376b46a",1004   "language": "Rust",1005   "lines": 132,1006   "truncated": false,1007   "block": 2,1008   "row": 24161009  },1010  {1011   "path": "ochm/src/features.rs",1012   "sha256": "48a41ddc8722f807d25391b596a90b0cd4e7f3591b4d177b0dacf9935e8dcf22",1013   "language": "Rust",1014   "lines": 681,1015   "truncated": false,1016   "block": 2,1017   "row": 24641018  },1019  {1020   "path": "ochm/src/lib.rs",1021   "sha256": "2427f80b31eb4271c5fff6721e90db35a1b96c7117210901c2997456bbd0df95",1022   "language": "Rust",1023   "lines": 8,1024   "truncated": false,1025   "block": 2,1026   "row": 23861027  },1028  {1029   "path": "ochm/src/models.rs",1030   "sha256": "874016e3b96ed5199e7f2eb95006c11c103acbfddb3d77d65ff265233d450782",1031   "language": "Rust",1032   "lines": 132,1033   "truncated": false,1034   "block": 2,1035   "row": 24131036  },1037  {1038   "path": "ochm/src/prob_merger.rs",1039   "sha256": "c3870f35ccb9272f17fbe67dd4c84cb351c88e1fde6445e07b89a1af58b3db4e",1040   "language": "Rust",1041   "lines": 192,1042   "truncated": false,1043   "block": 2,1044   "row": 24221045  },1046  {1047   "path": "ochm/src/range_feeder.rs",1048   "sha256": "c9282e37285522b273b566c2cc2e008422c60061eacffa04a09be8ab31ac14dc",1049   "language": "Rust",1050   "lines": 243,1051   "truncated": false,1052   "block": 2,1053   "row": 24301054  },1055  {1056   "path": "ochm/src/subcommand.rs",1057   "sha256": "1ec81c1712381683388ed9fe04ad4ef7973ecf2a4d112f17b6c4b1c3e6840d6e",1058   "language": "Rust",1059   "lines": 429,1060   "truncated": false,1061   "block": 2,1062   "row": 24571063  },1064  {1065   "path": "ochm/src/util.rs",1066   "sha256": "494333f82076af740a410b529f0d18ef91d23732f34db5c10b68a90fa404cc31",1067   "language": "Rust",1068   "lines": 60,1069   "truncated": false,1070   "block": 2,1071   "row": 24021072  },1073  {1074   "path": "safe-record/src/lib.rs",1075   "sha256": "a8fc40f7eda5e772336a0d740262348e30fca4c1f6988592945f7b80bfb0be58",1076   "language": "Rust",1077   "lines": 122,1078   "truncated": false,1079   "block": 2,1080   "row": 24111081  },1082  {1083   "path": "tests/add_implicit_col.py",1084   "sha256": "b4ab527b200ae85b2a0903c7f588b2406c02d5690b6d503c1b6fdfdf5fb4f202",1085   "language": "Python",1086   "lines": 28,1087   "truncated": false,1088   "block": 2,1089   "row": 16871090  },1091  {1092   "path": "tests/add_mn_tags_to_repair_records.py",1093   "sha256": "3722419242ce2402803da9169ce9c4254e577318c99fc149baf8eb6680c249aa",1094   "language": "Python",1095   "lines": 33,1096   "truncated": false,1097   "block": 2,1098   "row": 17151099  },1100  {1101   "path": "tests/check_extracts.sh",1102   "sha256": "50c60f0b0e827f611e4780adfe3a803a942f59cca4e710dbe7e333ca348455ec",1103   "language": "Shell",1104   "lines": 39,1105   "truncated": false,1106   "block": 2,1107   "row": 25101108  },1109  {1110   "path": "tests/check_extracts_flag.sh",1111   "sha256": "603b1edc5f96bd3318996ba037fc209f9c8087ac0234c7b650d6043d55546f99",1112   "language": "Shell",1113   "lines": 84,1114   "truncated": false,1115   "block": 2,1116   "row": 25621117  },1118  {1119   "path": "tests/common/mod.rs",1120   "sha256": "ed58961d7434be2e18624e7f40196e946a01b2e1c962381b7ea3c94f95e42eee",1121   "language": "Rust",1122   "lines": 245,1123   "truncated": false,1124   "block": 2,1125   "row": 24231126  },1127  {1128   "path": "tests/make_crams.sh",1129   "sha256": "a07fecd22305cee04b11d4a533b0aa327c3f9cfa892338fbd184f3b5e2c23292",1130   "language": "Shell",1131   "lines": 10,1132   "truncated": false,1133   "block": 2,1134   "row": 25001135  },1136  {1137   "path": "tests/make_trimmed_reads.sh",1138   "sha256": "017e4372366d12323ba5a770144e4fd9534eb5c978066128d3250b4dd3c35dd1",1139   "language": "Shell",1140   "lines": 21,1141   "truncated": false,1142   "block": 2,1143   "row": 25031144  },1145  {1146   "path": "tests/regress_tags.sh",1147   "sha256": "fd5d9141b50eb68d30b5c34727a145ff0ef6c143557cabf18f56fcd16d6d6c6e",1148   "language": "Shell",1149   "lines": 9,1150   "truncated": false,1151   "block": 2,1152   "row": 24971153  },1154  {1155   "path": "tests/trim_reads.py",1156   "sha256": "8146e60d1e8e291174e2183cc84c786145ccc78033ac7941a825138fa9d0b499",1157   "language": "Python",1158   "lines": 28,1159   "truncated": false,1160   "block": 2,1161   "row": 16991162  },1163  {1164   "path": "tests/update_extract_test_data.sh",1165   "sha256": "908bde08bb19ce3993261c2dbdb60adcc941ad9bcd8558f53136e2ce595b84c3",1166   "language": "Shell",1167   "lines": 69,1168   "truncated": false,1169   "block": 2,1170   "row": 25421171  }1172 ]1173}