OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/ehsanngh/deepcardiosim",4 "url": "https://github.com/ehsanngh/DeepCardioSim",5 "host": "github.com",6 "commit": "a0b271a9aee84fd7b6299602dd4dbf8a3a01698f",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "5cc17099e4280d644cba15d33a37724275c84946a315426de09f18f524e43c8c",14   "language": "License",15   "lines": 21,16   "truncated": false,17   "block": 11,18   "row": 1408019  },20  {21   "path": "README.rst",22   "sha256": "9314d5954c08acc3207e2a8ca66aff8f6fa690caf14a4f81bcc7c2cb19401220",23   "language": "Text",24   "lines": 46,25   "truncated": false,26   "block": 13,27   "row": 637328  },29  {30   "path": "basic_examples/2D_steady_state/GINO/data_loading.py",31   "sha256": "c8d1538d925b4947ff3887b68e515cc99ce7b7100967acf30878bf2011f86818",32   "language": "Python",33   "lines": 107,34   "truncated": false,35   "block": 12,36   "row": 1111037  },38  {39   "path": "basic_examples/2D_steady_state/GINO/data_processing.py",40   "sha256": "4c122eb6e11c2f0cbdebba8e789b287218795a8ea5e92c6ac036cf334e52d2a5",41   "language": "Python",42   "lines": 85,43   "truncated": false,44   "block": 12,45   "row": 1125246  },47  {48   "path": "basic_examples/2D_steady_state/GINO/gino.py",49   "sha256": "364eb392e69af4bc10ff5e800777fb99685902350700636d65fb362615a20576",50   "language": "Python",51   "lines": 452,52   "truncated": false,53   "block": 12,54   "row": 2076455  },56  {57   "path": "basic_examples/2D_steady_state/GINO/post_training.ipynb",58   "sha256": "8ac2711a2c0331d05b0a7031505d892d3bd8d3d9eb24502c2b11887825fafaed",59   "language": "Jupyter",60   "lines": 97,61   "truncated": false,62   "block": 11,63   "row": 1232664  },65  {66   "path": "basic_examples/2D_steady_state/GINO/training.py",67   "sha256": "3ed7f71dd12b08b4f0f942984e037c6dbb7a8cf6184add39008293b1f1552f3b",68   "language": "Python",69   "lines": 79,70   "truncated": false,71   "block": 12,72   "row": 801273  },74  {75   "path": "basic_examples/2D_steady_state/GNN/data_loading.py",76   "sha256": "de96f820937f9f224a5e0151a0ad0b070635bdc42a7b67f053bfac958d0258ea",77   "language": "Python",78   "lines": 81,79   "truncated": false,80   "block": 12,81   "row": 991382  },83  {84   "path": "basic_examples/2D_steady_state/GNN/data_processing.py",85   "sha256": "003d6b4176b74ccd56d11180c3640cf1f884af35387bb55c7a485b7af19dc6b4",86   "language": "Python",87   "lines": 88,88   "truncated": false,89   "block": 12,90   "row": 1103291  },92  {93   "path": "basic_examples/2D_steady_state/GNN/gnn_model.py",94   "sha256": "7e8f769d6ce514e0e0dc91d8601700ece1579c69e027b21a79787d84fff540c3",95   "language": "Python",96   "lines": 149,97   "truncated": false,98   "block": 12,99   "row": 14057100  },101  {102   "path": "basic_examples/2D_steady_state/GNN/post_training.ipynb",103   "sha256": "20527d4e230be940b5d97744e9a364656cd2e9d50e68df48e13f3527a3d0b914",104   "language": "Jupyter",105   "lines": 79,106   "truncated": false,107   "block": 11,108   "row": 12274109  },110  {111   "path": "basic_examples/2D_steady_state/GNN/training.py",112   "sha256": "2614daf90a7ca6ada096c28b367828b758966a414a3b18db15481d26727b5d7c",113   "language": "Python",114   "lines": 57,115   "truncated": false,116   "block": 12,117   "row": 7236118  },119  {120   "path": "basic_examples/2D_steady_state/generate_dataset.py",121   "sha256": "54c51257e7e54cf29e2a6a0adb328c9a3ab3fb2ecee805920a42b3d69b759e9c",122   "language": "Python",123   "lines": 138,124   "truncated": false,125   "block": 12,126   "row": 13279127  },128  {129   "path": "basic_examples/2D_steady_state/solve_one_case.ipynb",130   "sha256": "39aefce152e0ba6bb207d75d88b2758717eb5b33aaf19f6d89dbfb00899f7d42",131   "language": "Jupyter",132   "lines": 258,133   "truncated": false,134   "block": 11,135   "row": 13048136  },137  {138   "path": "basic_examples/2D_time_dependent/GINO/data_loading.py",139   "sha256": "c9adea0738c7b80f8bffb0efdd5359c2035e882e8fcd0ad77818ee7065018459",140   "language": "Python",141   "lines": 154,142   "truncated": false,143   "block": 12,144   "row": 13276145  },146  {147   "path": "basic_examples/2D_time_dependent/GINO/data_processing.py",148   "sha256": "6eacd0f022d6aae65ebdb05bae719f01f57e9f97ce4dd41ea77b0a2c9f3a47f5",149   "language": "Python",150   "lines": 85,151   "truncated": false,152   "block": 12,153   "row": 11278154  },155  {156   "path": "basic_examples/2D_time_dependent/GINO/gino.py",157   "sha256": "7c403d33b7ae07eebb3c4f6efcf9ec77765f6878a456d1830bd11689f899b877",158   "language": "Python",159   "lines": 445,160   "truncated": false,161   "block": 12,162   "row": 20714163  },164  {165   "path": "basic_examples/2D_time_dependent/GINO/post_training.ipynb",166   "sha256": "fc5692df7f819ea1a023326f4a4d352bfdf5d3ac5d4eefb7252746c98c7eaffd",167   "language": "Jupyter",168   "lines": 115,169   "truncated": false,170   "block": 11,171   "row": 12417172  },173  {174   "path": "basic_examples/2D_time_dependent/GINO/training.py",175   "sha256": "331bf6104c38d0df985a8d36112fbf79a8dc09725650796794a768153d23b76a",176   "language": "Python",177   "lines": 94,178   "truncated": false,179   "block": 12,180   "row": 9237181  },182  {183   "path": "basic_examples/2D_time_dependent/generate_dataset.py",184   "sha256": "6f34c0a0970cc30d9edf7deef24efeca87181d38f8c9c592cca001ac76b607ea",185   "language": "Python",186   "lines": 228,187   "truncated": false,188   "block": 12,189   "row": 16603190  },191  {192   "path": "basic_examples/2D_time_dependent/shell_generate_dataset.sh",193   "sha256": "fd696c436b66909cea0fef8db8a09efdc2c34a7f202deef5a9fa339a9fc055d0",194   "language": "Shell",195   "lines": 7,196   "truncated": false,197   "block": 13,198   "row": 4242199  },200  {201   "path": "basic_examples/2D_time_dependent/solve_one_case.ipynb",202   "sha256": "05403ae222102ef7e2e711c900cdf5fb3a917bcd62f51104abdb21273f751f25",203   "language": "Jupyter",204   "lines": 292,205   "truncated": false,206   "block": 11,207   "row": 13120208  },209  {210   "path": "basic_examples/3D_time_dependent/GINO/data_loading.py",211   "sha256": "417d74da974a97a964bd76d4bd66c5fe2b1c49a8f803e69ade47afe77e38db9d",212   "language": "Python",213   "lines": 172,214   "truncated": false,215   "block": 12,216   "row": 14200217  },218  {219   "path": "basic_examples/3D_time_dependent/GINO/data_processing.py",220   "sha256": "0479aeb89911b219b2e2ee458d6b7ee6be23daf0d3d45c4ab54ca4ddff045856",221   "language": "Python",222   "lines": 85,223   "truncated": false,224   "block": 12,225   "row": 11287226  },227  {228   "path": "basic_examples/3D_time_dependent/GINO/gino.py",229   "sha256": "510926ed10a74b428a764dac449a388f60e2e3f6deb593b5ae18d86a9d1d4485",230   "language": "Python",231   "lines": 445,232   "truncated": false,233   "block": 12,234   "row": 20713235  },236  {237   "path": "basic_examples/3D_time_dependent/GINO/in_nbr.py",238   "sha256": "7649bc5e7540275b115b08817aa84664833209177305291ee11b3f762982e379",239   "language": "Python",240   "lines": 47,241   "truncated": false,242   "block": 12,243   "row": 7394244  },245  {246   "path": "basic_examples/3D_time_dependent/GINO/post_training.ipynb",247   "sha256": "94b5cf7cd5730b93250b3acfd1c37d7e1d622964134463247a68fd18b711e9cd",248   "language": "Jupyter",249   "lines": 129,250   "truncated": false,251   "block": 11,252   "row": 12457253  },254  {255   "path": "basic_examples/3D_time_dependent/GINO/training.py",256   "sha256": "8013c938071d18ea2bbcb84e12cd5070a016dff08612ec55f7a41bda5deb300f",257   "language": "Python",258   "lines": 94,259   "truncated": false,260   "block": 12,261   "row": 9273262  },263  {264   "path": "basic_examples/3D_time_dependent/generate_dataset.py",265   "sha256": "f905ec655f59491397d1fabf98107fe2fb1412c8e20c4604c723aeef28e259c3",266   "language": "Python",267   "lines": 245,268   "truncated": false,269   "block": 12,270   "row": 17189271  },272  {273   "path": "basic_examples/3D_time_dependent/solve_one_case.ipynb",274   "sha256": "77d306b50faa9e258e55f2dd8e6e119d76f5a2fd64bf591ae9777f14960e8b8e",275   "language": "Jupyter",276   "lines": 255,277   "truncated": false,278   "block": 11,279   "row": 13072280  },281  {282   "path": "cardiac_models/electrophysio/GINO/gino.py",283   "sha256": "e5562e421e21c2750b4a17fc5ebbd5d2664dcc79def5c7862f7eebd8795f0ceb",284   "language": "Python",285   "lines": 480,286   "truncated": false,287   "block": 12,288   "row": 20850289  },290  {291   "path": "cardiac_models/electrophysio/GINO/model.py",292   "sha256": "16bdbe7bac61e1de3f1e58971ddaee601394e91074efce75fc730d64e3bea233",293   "language": "Python",294   "lines": 23,295   "truncated": false,296   "block": 12,297   "row": 5340298  },299  {300   "path": "cardiac_models/electrophysio/GNN/gnn.py",301   "sha256": "b7d7b812036e280879b024a4bfd39609eb90522c92cb22fa8e7b5cd5ea19d6f6",302   "language": "Python",303   "lines": 420,304   "truncated": false,305   "block": 12,306   "row": 19451307  },308  {309   "path": "cardiac_models/electrophysio/GNN/model.py",310   "sha256": "54e2399f5f695a9b741bb9d35570c5515a0982d710bd339dcc071822fc67af14",311   "language": "Python",312   "lines": 13,313   "truncated": false,314   "block": 12,315   "row": 4088316  },317  {318   "path": "cardiac_models/electrophysio/data_loading.py",319   "sha256": "0ffa9e182e19c1c6d47934751cfd85c5ced2f3cf398a5f67ba6050d3c03e56bd",320   "language": "Python",321   "lines": 80,322   "truncated": false,323   "block": 12,324   "row": 10176325  },326  {327   "path": "cardiac_models/electrophysio/data_processing.py",328   "sha256": "dce9b838bf1bac9d0069356a469fd78ce3715d7d944a934a7c26b5b1f98af38e",329   "language": "Python",330   "lines": 202,331   "truncated": false,332   "block": 12,333   "row": 16012334  },335  {336   "path": "cardiac_models/electrophysio/generate_interpolated_cases.py",337   "sha256": "622245a80a87cbc7b4a33e6381ef6c4e83a97c8ed5cb974dc528b2be66665a6a",338   "language": "Python",339   "lines": 141,340   "truncated": false,341   "block": 12,342   "row": 14458343  },344  {345   "path": "cardiac_models/electrophysio/handle_npy_files.py",346   "sha256": "c3db1460335f9c8cea3e0668cdaa101b2c70f57dd03ac49c32239ff3a76d14cf",347   "language": "Python",348   "lines": 48,349   "truncated": false,350   "block": 12,351   "row": 7208352  },353  {354   "path": "cardiac_models/electrophysio/post_training.ipynb",355   "sha256": "ec92d226b94ac27cef761e03875797412419e7cc66a04b5c32e668133a56adaa",356   "language": "Jupyter",357   "lines": 389,358   "truncated": false,359   "block": 11,360   "row": 13284361  },362  {363   "path": "cardiac_models/electrophysio/predict.py",364   "sha256": "ce4077a634d5dfbaea7715bece4c8a2156f09966ad73ae7da875b35d26831c2b",365   "language": "Python",366   "lines": 233,367   "truncated": false,368   "block": 12,369   "row": 17439370  },371  {372   "path": "cardiac_models/electrophysio/raw_data_handling.py",373   "sha256": "178b66535e82625f4eee11f766ef8be4baabd7cdda4b05188dac149e027ea632",374   "language": "Python",375   "lines": 112,376   "truncated": false,377   "block": 12,378   "row": 11813379  },380  {381   "path": "cardiac_models/electrophysio/training.py",382   "sha256": "d3a2a5fb9aa5da178186d78100efdb1151c56d0479f78b65f5cbc63cdeaea58e",383   "language": "Python",384   "lines": 112,385   "truncated": false,386   "block": 12,387   "row": 10987388  },389  {390   "path": "deepcardio/__init__.py",391   "sha256": "affbd83452eb04d12be8f1d75f12668e3dfcf8f563b2ee67221b4cb766c2257e",392   "language": "Python",393   "lines": 3,394   "truncated": false,395   "block": 12,396   "row": 3136397  },398  {399   "path": "deepcardio/electrophysio/__init__.py",400   "sha256": "f796f17c97f2abfbf7dbccfe4a5f312ce1881ab4fd1067e241b90bdac4b8be44",401   "language": "Python",402   "lines": 6,403   "truncated": false,404   "block": 12,405   "row": 4291406  },407  {408   "path": "deepcardio/losses/__init__.py",409   "sha256": "702ac1a937b7e0859750bc59cc68353f27ca3cb8c787cb5eda384bf8e12f2eeb",410   "language": "Python",411   "lines": 1,412   "truncated": false,413   "block": 12,414   "row": 3071415  },416  {417   "path": "deepcardio/losses/data_losses.py",418   "sha256": "8f8c6075204e00bc0597c73586b270e6e9b36c694863377b187e628225a9ace2",419   "language": "Python",420   "lines": 407,421   "truncated": false,422   "block": 12,423   "row": 18875424  },425  {426   "path": "deepcardio/losses/finite_diff.py",427   "sha256": "c3d6e4d23bf6b7bd15df5aea2235bb5cb6249f24824491cabb2ec44700f6a689",428   "language": "Python",429   "lines": 126,430   "truncated": false,431   "block": 12,432   "row": 12158433  },434  {435   "path": "deepcardio/meshdata/__init__.py",436   "sha256": "35b132f38f116bde961fb5aedc2768d0caaaf9d61d697ddc5c57ca5b629a6667",437   "language": "Python",438   "lines": 1,439   "truncated": false,440   "block": 12,441   "row": 3111442  },443  {444   "path": "deepcardio/meshdata/dataset.py",445   "sha256": "82f767e59993f196e51f44440f28fb141687fbe65d858bdd5fee2b1a4cbed580",446   "language": "Python",447   "lines": 22,448   "truncated": false,449   "block": 12,450   "row": 5174451  },452  {453   "path": "deepcardio/neuralop_core/layers/base_spectral_conv.py",454   "sha256": "9f24e2282a1aa8598b86bba8486e8120e21da66c3413fd00f17bb56ef5fa77cf",455   "language": "Python",456   "lines": 27,457   "truncated": false,458   "block": 12,459   "row": 5942460  },461  {462   "path": "deepcardio/neuralop_core/layers/einsum_utils.py",463   "sha256": "8b7bdaeb1c40891b0869c302bd4279b833d9987426160bd4d322f8d570f441bd",464   "language": "Python",465   "lines": 79,466   "truncated": false,467   "block": 12,468   "row": 10626469  },470  {471   "path": "deepcardio/neuralop_core/layers/embeddings.py",472   "sha256": "3b803f8c294422fbeef19e0165e02a9a0050c9e32c0fc539759f683ef952ab55",473   "language": "Python",474   "lines": 34,475   "truncated": false,476   "block": 12,477   "row": 6533478  },479  {480   "path": "deepcardio/neuralop_core/layers/fno_block.py",481   "sha256": "a70f71850e6e2f44ffd0dbd448d8a79f9b697dac78083061337107fe34667370",482   "language": "Python",483   "lines": 373,484   "truncated": false,485   "block": 12,486   "row": 19217487  },488  {489   "path": "deepcardio/neuralop_core/layers/integral_transform.py",490   "sha256": "0b77dc1e6a632cda9c9b899dc665615cd561fd1ff253c33ecc9e30334dd5c026",491   "language": "Python",492   "lines": 191,493   "truncated": false,494   "block": 12,495   "row": 15754496  },497  {498   "path": "deepcardio/neuralop_core/layers/mlp.py",499   "sha256": "3487797655de10131cff4970189c37ace3dc2b125d07ace3634656e7541afed1",500   "language": "Python",501   "lines": 115,502   "truncated": false,503   "block": 12,504   "row": 11726505  },506  {507   "path": "deepcardio/neuralop_core/layers/normalization_layers.py",508   "sha256": "9272f9c741d3437d052543aaba68fa49e32a75bc480d0c363369408a2abbeb5e",509   "language": "Python",510   "lines": 49,511   "truncated": false,512   "block": 12,513   "row": 7234514  },515  {516   "path": "deepcardio/neuralop_core/layers/padding.py",517   "sha256": "1e8aed8315e359e290fb0d2a5d52d48db55eb80f57f195d913b3fdf625ce9c75",518   "language": "Python",519   "lines": 153,520   "truncated": false,521   "block": 12,522   "row": 14246523  },524  {525   "path": "deepcardio/neuralop_core/layers/resample.py",526   "sha256": "e8f6074c890772a26fde85dc66b961aeb8cd3ec52378cd9eebfb37f9de7b0663",527   "language": "Python",528   "lines": 91,529   "truncated": false,530   "block": 12,531   "row": 11048532  },533  {534   "path": "deepcardio/neuralop_core/layers/segment_csr.py",535   "sha256": "9f936268211c98dae1b2dc506a202644cd4c2377888d1c1869d15df4abda3b1d",536   "language": "Python",537   "lines": 93,538   "truncated": false,539   "block": 12,540   "row": 10785541  },542  {543   "path": "deepcardio/neuralop_core/layers/skip_connections.py",544   "sha256": "6cb526fef10361ca0be5e195f92f94d84424b2a99015d25f85bd3592a9aa16f6",545   "language": "Python",546   "lines": 125,547   "truncated": false,548   "block": 12,549   "row": 12745550  },551  {552   "path": "deepcardio/neuralop_core/layers/spectral_convolution.py",553   "sha256": "a40dcbb5172df5dbb4f879ad4fafb7af8a366cf155971fb2582c2b9f2bb4e88b",554   "language": "Python",555   "lines": 697,556   "truncated": false,557   "block": 12,558   "row": 21626559  },560  {561   "path": "deepcardio/neuralop_core/layers/spherical_convolution.py",562   "sha256": "6bcced1b27f13d496db2b679980a4d8bab0c189c3ec26b62970d9e69056a328f",563   "language": "Python",564   "lines": 513,565   "truncated": false,566   "block": 12,567   "row": 20253568  },569  {570   "path": "deepcardio/neuralop_core/models/__init__.py",571   "sha256": "37f629a945e7e715f82e9bbc129a724060b2377bf9bf52f007cdb5aaae36a1bd",572   "language": "Python",573   "lines": 5,574   "truncated": false,575   "block": 12,576   "row": 3419577  },578  {579   "path": "deepcardio/neuralop_core/models/base_model.py",580   "sha256": "6503e554d9487bfec805bc762d76ea31b84002003c36ca35fd60b1fe78a85843",581   "language": "Python",582   "lines": 168,583   "truncated": false,584   "block": 12,585   "row": 15219586  },587  {588   "path": "deepcardio/neuralop_core/models/fno.py",589   "sha256": "3eb0a129d8ecdeec4603820e3bc2e90baa908d4636b58cb2c10c3ab79f7482f0",590   "language": "Python",591   "lines": 552,592   "truncated": false,593   "block": 12,594   "row": 20697595  },596  {597   "path": "deepcardio/neuralop_core/mpu/comm.py",598   "sha256": "9dfbeb148182879707e4d50b4a08ab42809c87179044093fcaae237a2dfc2538",599   "language": "Python",600   "lines": 232,601   "truncated": false,602   "block": 12,603   "row": 16082604  },605  {606   "path": "deepcardio/neuralop_core/training/__init__.py",607   "sha256": "e6c67c2443e155c7a02888e2ad071e4f7f7a8e43e16f980e37a49c7dbc3b2398",608   "language": "Python",609   "lines": 1,610   "truncated": false,611   "block": 12,612   "row": 3030613  },614  {615   "path": "deepcardio/neuralop_core/training/adamw.py",616   "sha256": "59f0b0213f6d7e0bf10fc1c0cf2a159ded47401c267ff767f5e32aabdccd3486",617   "language": "Python",618   "lines": 124,619   "truncated": false,620   "block": 12,621   "row": 13805622  },623  {624   "path": "deepcardio/neuralop_core/transforms/__init__.py",625   "sha256": "b032a245c12f96ed7be7e1544d9a09ef89814529f3e60c3dc50771f073adf16d",626   "language": "Python",627   "lines": 2,628   "truncated": false,629   "block": 12,630   "row": 3320631  },632  {633   "path": "deepcardio/neuralop_core/transforms/base_dataprocessor.py",634   "sha256": "a55049ddc089b5bec2f92270d5ec2084c0d9dcae3ab424c75b484a3175f96a9c",635   "language": "Python",636   "lines": 58,637   "truncated": false,638   "block": 12,639   "row": 7738640  },641  {642   "path": "deepcardio/neuralop_core/transforms/base_transforms.py",643   "sha256": "8517023812f934c9e5deb799db77316cd95488d559b68b6ddd35782b6dc6cee4",644   "language": "Python",645   "lines": 33,646   "truncated": false,647   "block": 12,648   "row": 5085649  },650  {651   "path": "deepcardio/neuralop_core/transforms/normalizers.py",652   "sha256": "8f5f84bc7d14cec4796773ec2b53cddbc178de1777b6503ea8264a384cd3ae24",653   "language": "Python",654   "lines": 157,655   "truncated": false,656   "block": 12,657   "row": 13876658  },659  {660   "path": "deepcardio/neuralop_core/utils.py",661   "sha256": "24174d6337184c380c38940f7bbe445049ef17637034509a824381cf354e73f2",662   "language": "Python",663   "lines": 88,664   "truncated": false,665   "block": 12,666   "row": 10164667  },668  {669   "path": "deepcardio/plots/__init__.py",670   "sha256": "162afe16631f1ec54245563a179466b594a15bb858fe75e1ccdef7f94fc7d957",671   "language": "Python",672   "lines": 1,673   "truncated": false,674   "block": 12,675   "row": 3050676  },677  {678   "path": "deepcardio/plots/plots.py",679   "sha256": "031218174d78b27f83b1b54c4885bac55d254226837fe31ea53a550b66f8c163",680   "language": "Python",681   "lines": 10,682   "truncated": false,683   "block": 12,684   "row": 4050685  },686  {687   "path": "deepcardio/train_state.py",688   "sha256": "6bc5a777dc08e37e42de08ef793e49afe9fd5b27b94f617f69e6d7a66a1f1649",689   "language": "Python",690   "lines": 152,691   "truncated": false,692   "block": 12,693   "row": 14030694  },695  {696   "path": "deepcardio/trainer.py",697   "sha256": "83bec99efc042c396896d898991411d547f5f565ee30ebc9d7c386208f8253a5",698   "language": "Python",699   "lines": 594,700   "truncated": false,701   "block": 12,702   "row": 20873703  },704  {705   "path": "deepcardio/utils.py",706   "sha256": "1e1e84ae4f938229873f67614f5c4f78d7163e8bb80ac432f4da46437ca9507e",707   "language": "Python",708   "lines": 102,709   "truncated": false,710   "block": 12,711   "row": 9967712  }713 ]714}